Works by Eliceiri, Kevin W

Results: 121

The ImageJ Ecosystem: An Open and Extensible Platform for Biomedical Image Analysis.

Published in:

Microscopy & Microanalysis, 2017, v. 23, p. 226, doi. 10.1017/S1431927617001817

By:

Rueden, Curtis T.;
Eliceiri, Kevin W.

Publication type:

Article

Quantification of Collagen Organization and Extracellular Matrix Factors within the Healing Ligament.

Published in:

Microscopy & Microanalysis, 2011, v. 17, n. 5, p. 779, doi. 10.1017/S1431927611011925

By:

Chamberlain, Connie S.;
Crowley, Erin M.;
Kobayashi, Hirohito;
Eliceiri, Kevin W.;
Vanderby, Ray

Publication type:

Article

Multiphoton Flow Cytometry to Assess Intrinsic and Extrinsic Fluorescence in Cellular Aggregates: Applications to Stem Cells.

Published in:

Microscopy & Microanalysis, 2011, v. 17, n. 4, p. 540, doi. 10.1017/S1431927610000280

By:

Buschke, David G.;
Squirrell, Jayne M.;
Ansari, Hidayath;
Smith, Michael A.;
Rueden, Curtis T.;
Williams, Justin C.;
Lyons, Gary E.;
Kamp, Timothy J.;
Eliceiri, Kevin W.;
Ogle, Brenda M.

Publication type:

Article

Visualization of Morphological and Molecular Features Associated with Chronic Ischemia in Bioengineered Human Skin.

Published in:

Microscopy & Microanalysis, 2010, v. 16, n. 2, p. 117, doi. 10.1017/S1431927610000103

By:

Gill, Erin M.;
Straseski, Joely A.;
Rasmussen, Cathy A.;
Liliensiek, Sara J.;
Eliceiri, Kevin W.;
Ramanujam, Nirmala;
White, John G.;
Allen-Hoffmann, B. Lynn

Publication type:

Article

Wavelet Compression of Three-Dimensional Time-Lapse Biological Image Data.

Published in:

Microscopy & Microanalysis, 2005, v. 11, n. 1, p. 9, doi. 10.1017/s1431927605050014

By:

H. Narfi Stefansson;
Kevin W. Eliceiri;
Charles F. Thomas;
Amos Ron;
Ron DeVore;
Robert Sharpley;
John G. White

Publication type:

Article

2020 BioImage Analysis Survey: Community experiences and needs for the future.

Published in:

Biological Imaging, 2021, v. 1, p. e-1, doi. 10.1017/S2633903X21000039

By:

Jamali, Nasim;
Dobson, Ellen T. A.;
Eliceiri, Kevin W.;
Carpenter, Anne E.;
Cimini, Beth A.

Publication type:

Article

Applying Multiphoton Imaging to the Study of Membrane Dynamics in Living Cells.

Published in:

Traffic, 2001, v. 2, n. 11, p. 775, doi. 10.1034/j.1600-0854.2001.21105.x

By:

White, John G.;
Squirrell, Jayne M.;
Eliceiri, Kevin W.

Publication type:

Article

Using fluorescence lifetime microscopy to study the subcellular localization of anthocyanins.

Published in:

Plant Journal, 2016, v. 88, n. 5, p. 895, doi. 10.1111/tpj.13297

By:

Chanoca, Alexandra;
Burkel, Brian;
Kovinich, Nik;
Grotewold, Erich;
Eliceiri, Kevin W.;
Otegui, Marisa S.

Publication type:

Article

HIV RGB: Automated Single-Cell Analysis of HIV-1 Rev-Dependent RNA Nuclear Export and Translation Using Image Processing in KNIME.

Published in:

Viruses (1999-4915), 2022, v. 14, n. 5, p. 903, doi. 10.3390/v14050903

By:

Evans III, Edward L.;
Pocock, Ginger M.;
Einsdorf, Gabriel;
Behrens, Ryan T.;
Dobson, Ellen T. A.;
Wiedenmann, Marcel;
Birkhold, Christian;
Ahlquist, Paul;
Eliceiri, Kevin W.;
Sherer, Nathan M.

Publication type:

Article

Machine Learning Methods for Fluorescence Lifetime Imaging (FLIM) Based Label-Free Detection of Microglia.

Published in:

Frontiers in Neuroscience, 2020, v. 14, p. N.PAG, doi. 10.3389/fnins.2020.00931

By:

Sagar, Md Abdul Kader;
Cheng, Kevin P.;
Ouellette, Jonathan N.;
Williams, Justin C.;
Watters, Jyoti J.;
Eliceiri, Kevin W.

Publication type:

Article

Stromal alterations in ovarian cancers via wavelength dependent Second Harmonic Generation microscopy and optical scattering.

Published in:

2017

By:

Tilbury, Karissa B.;
Campbell, Kirby R.;
Eliceiri, Kevin W.;
Salih, Sana M.;
Patankar, Manish;
Campagnola, Paul J.

Publication type:

journal article

Human pancreatic stellate cells modulate 3D collagen alignment to promote the migration of pancreatic ductal adenocarcinoma cells.

Published in:

Biomedical Microdevices, 2016, v. 18, n. 6, p. 1, doi. 10.1007/s10544-016-0128-1

By:

Drifka, Cole R.;
Loeffler, Agnes G.;
Esquibel, Corinne R.;
Weber, Sharon M.;
Eliceiri, Kevin W.;
Kao, W. John

Publication type:

Article

Non-disruptive collagen characterization in clinical histopathology using cross-modality image synthesis.

Published in:

Communications Biology, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42003-020-01151-5

By:

Keikhosravi, Adib;
Li, Bin;
Liu, Yuming;
Conklin, Matthew W.;
Loeffler, Agnes G.;
Eliceiri, Kevin W.

Publication type:

Article

A semi-automated machine-learning based workflow for ellipsoid zone analysis in eyes with macular edema: SCORE2 pilot study.

Published in:

PLoS ONE, 2020, v. 15, n. 4, p. 1, doi. 10.1371/journal.pone.0232494

By:

Etheridge, Tyler;
Dobson, Ellen T. A.;
Wiedenmann, Marcel;
Papudesu, Chandana;
Scott, Ingrid U.;
Ip, Michael S.;
Eliceiri, Kevin W.;
Blodi, Barbara A.;
Domalpally, Amitha

Publication type:

Article

Patterned optogenetic modulation of neurovascular and metabolic signals.

Published in:

Journal of Cerebral Blood Flow & Metabolism, 2015, v. 35, n. 1, p. 140, doi. 10.1038/jcbfm.2014.189

By:

Richner, Thomas J;
Baumgartner, Ryan;
Brodnick, Sarah K;
Azimipour, Mehdi;
Krugner-Higby, Lisa A;
Eliceiri, Kevin W;
Williams, Justin C;
Pashaie, Ramin

Publication type:

Article

Expression of the Drosophila Homeobox Gene, Distal-less, Supports an Ancestral Role in Neural Development.

Published in:

Developmental Dynamics, 2016, v. 245, n. 1, p. 87, doi. 10.1002/DVDY.24359

By:

Plavicki, Jessica S.;
Squirrell, Jayne M.;
Eliceiri, Kevin W.;
Boekhoff‐Falk, Grace

Publication type:

Article

Navigating the Collagen Jungle: The Biomedical Potential of Fiber Organization in Cancer.

Published in:

Bioengineering (Basel), 2021, v. 8, n. 2, p. 1, doi. 10.3390/bioengineering8020017

By:

Ouellette, Jonathan N.;
Drifka, Cole R.;
Pointer, Kelli B.;
Yuming Liu;
Lieberthal, Tyler J.;
Kao, W. John;
Kuo, John S.;
Loeffler, Agnes G.;
Eliceiri, Kevin W.

Publication type:

Article

Hyperpolarized 13 C Magnetic Resonance Spectroscopic Imaging of Pyruvate Metabolism in Murine Breast Cancer Models of Different Metastatic Potential.

Published in:

Metabolites (2218-1989), 2021, v. 11, n. 5, p. 274, doi. 10.3390/metabo11050274

By:

Macdonald, Erin B.;
Begovatz, Paul;
Barton, Gregory P.;
Erickson-Bhatt, Sarah;
Inman, David R.;
Cox, Benjamin L.;
Eliceiri, Kevin W.;
Strigel, Roberta M.;
Ponik, Suzanne M.;
Fain, Sean B.;
Martins, Andre F.;
Chaumeil, Myriam M.

Publication type:

Article

Advanced Intestinal Cancers often Maintain a Multi-Ancestral Architecture.

Published in:

PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0150170

By:

Zahm, Christopher D.;
Szulczewski, Joseph M.;
Leystra, Alyssa A.;
Paul Olson, Terrah J.;
Clipson, Linda;
Albrecht, Dawn M.;
Middlebrooks, Malisa;
Thliveris, Andrew T.;
Matkowskyj, Kristina A.;
Washington, Mary Kay;
Newton, Michael A.;
Eliceiri, Kevin W.;
Halberg, Richard B.

Publication type:

Article

A device for the controlled cooling and freezing of excised plant specimens during magnetic resonance imaging.

Published in:

Plant Methods, 2021, v. 17, n. 1, p. 1, doi. 10.1186/s13007-021-00743-4

By:

Villouta, Camilo;
Cox, Benjamin L.;
Rauch, Beth;
Workmaster, Beth Ann A.;
Eliceiri, Kevin W.;
Atucha, Amaya

Publication type:

Article

Implementation of FRET Spectrometry Using Temporally Resolved Fluorescence: A Feasibility Study.

Published in:

International Journal of Molecular Sciences, 2024, v. 25, n. 9, p. 4706, doi. 10.3390/ijms25094706

By:

Trujillo, Justin;
Khan, Aliyah S.;
Adhikari, Dhruba P.;
Stoneman, Michael R.;
Chacko, Jenu V.;
Eliceiri, Kevin W.;
Raicu, Valerica

Publication type:

Article

Scientific Community Image Forum: A discussion forum for scientific image software.

Published in:

PLoS Biology, 2019, v. 17, n. 6, p. 1, doi. 10.1371/journal.pbio.3000340

By:

Rueden, Curtis T.;
Ackerman, Jeanelle;
Arena, Ellen T.;
Eglinger, Jan;
Cimini, Beth A.;
Goodman, Allen;
Carpenter, Anne E.;
Eliceiri, Kevin W.

Publication type:

Article

Neuroendocrine Tumor-Targeted Upconversion Nanoparticle-Based Micelles for Simultaneous NIR-Controlled Combination Chemotherapy and Photodynamic Therapy, and Fluorescence Imaging.

Published in:

Advanced Functional Materials, 2017, v. 27, n. 8, p. n/a, doi. 10.1002/adfm.201604671

By:

Chen, Guojun;
Jaskula‐Sztul, Renata;
Esquibel, Corinne R.;
Lou, Irene;
Zheng, Qifeng;
Dammalapati, Ajitha;
Harrison, April;
Eliceiri, Kevin W.;
Tang, Weiping;
Chen, Herbert;
Gong, Shaoqin

Publication type:

Article

SciJava Ops: an improved algorithms framework for Fiji and beyond.

Published in:

Frontiers in Bioinformatics, 2024, p. 1, doi. 10.3389/fbinf.2024.1435733

By:

Selzer, Gabriel J.;
Rueden, Curtis T.;
Hiner, Mark C.;
Evans, Edward L.;
Kolb, David;
Wiedenmann, Marcel;
Birkhold, Christian;
Buchholz, Tim-Oliver;
Helfrich, Stefan;
Northan, Brian;
Walter, Alison;
Schindelin, Johannes;
Pietzsch, Tobias;
Saalfeld, Stephan;
Berthold, Michael R.;
Eliceiri, Kevin W.

Publication type:

Article

Real-time open-source FLIM analysis.

Published in:

Frontiers in Bioinformatics, 2023, p. 01, doi. 10.3389/fbinf.2023.1286983

By:

Tan, Kevin K. D.;
Tsuchida, Mark A.;
Chacko, Jenu V.;
Gahm, Niklas A.;
Eliceiri, Kevin W.

Publication type:

Article

Metadata matters: access to image data in the real world.

Published in:

Journal of Cell Biology, 2010, v. 189, n. 5, p. 777, doi. 10.1083/jcb.201004104

By:

Linkert, Melissa;
Rueden, Curtis T.;
Allan, Chris;
Burel, Jean-Marie;
Moore, Will;
Patterson, Andrew;
Loranger, Brian;
Moore, Josh;
Neves, Carlos;
MacDonald, Donald;
Tarkowska, Aleksandra;
Sticco, Caitlin;
Hill, Emma;
Rossner, Mike;
Eliceiri, Kevin W.;
Swedlow, Jason R.

Publication type:

Article

Anthocyanin Vacuolar Inclusions Form by a Microautophagy Mechanism.

Published in:

Plant Cell, 2015, v. 27, n. 9, p. 2545, doi. 10.1105/tpc.15.00589

By:

Chanoca, Alexandra;
Kovinich, Nik;
Burkel, Brian;
Stecha, Samantha;
Bohorquez-Restrepo, Andres;
Ueda, Takashi;
Eliceiri, Kevin W.;
Grotewold, Erich;
Otegui, Marisa S.

Publication type:

Article

Toolbox VisBio: A Computational Tool for Visualization of Multidimensional Biological Image Data.

Published in:

2004

By:

Rueden, Curtis;
Eliceiri, Kevin W.;
White, John G.

Publication type:

Other

CASPI: collaborative photon processing for active single-photon imaging.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38893-9

By:

Lee, Jongho;
Ingle, Atul;
Chacko, Jenu V.;
Eliceiri, Kevin W.;
Gupta, Mohit

Publication type:

Article

Development of a Low-Cost Gastroscope Prototype (GP) for Potential Cost-Effective Gastric Cancer Screening in Prevalent Regions.

Published in:

Journal of Digestive Endoscopy, 2023, v. 14, n. 1, p. 22, doi. 10.1055/s-0043-1762574

By:

Xu, James;
Benson, Mark E.;
Granlund, Liam M.;
Gehrke, Seth;
Stanfield, Dylan;
Weiss, Jennifer;
Pfau, Patrick;
Soni, Anurag;
Cox, Ben L.;
Petry, George;
Swader, Robert A.;
Reichelderfer, Mark;
Li, Zhanhai;
Atrukstang, Tenzin;
Banik, Nyah;
Eliceiri, Kevin W.;
Gopal, Deepak V.

Publication type:

Article

Autofluorescence lifetime imaging of cellular metabolism: Sensitivity toward cell density, pH, intracellular, and intercellular heterogeneity.

Published in:

Cytometry. Part A, 2019, v. 95, n. 1, p. 56, doi. 10.1002/cyto.a.23603

By:

Chacko, Jenu V.;
Eliceiri, Kevin W.

Publication type:

Article

Cell death, non-invasively assessed by intrinsic fluorescence intensity of NADH, is a predictive indicator of functional differentiation of embryonic stem cells.

Published in:

Biology of the Cell (Wiley-Blackwell), 2012, v. 104, n. 6, p. 352, doi. 10.1111/boc.201100091

By:

Buschke, David G.;
Squirrell, Jayne M.;
Fong, Jimmy J.;
Eliceiri, Kevin W.;
Ogle, Brenda M.

Publication type:

Article

Bimolecular fluorescence complementation analysis of eukaryotic fusion products.

Published in:

Biology of the Cell (Wiley-Blackwell), 2010, v. 102, n. 9, p. 525, doi. 10.1042/BC20100033

By:

Ho‑Pi Lin;
Claudius Vincenz;
Kevin W. Eliceiri;
Tom K. Kerppola

Publication type:

Article

BioClips of symmetric and asymmetric cell division.

Published in:

Biology of the Cell (Wiley-Blackwell), 2007, v. 099, n. 5, p. 289

By:

Fong-Mei Lu;
Kevin W. Eliceiri;
John G. White

Publication type:

Article

The ImageJ ecosystem: Open‐source software for image visualization, processing, and analysis.

Published in:

Protein Science: A Publication of the Protein Society, 2021, v. 30, n. 1, p. 234, doi. 10.1002/pro.3993

By:

Schroeder, Alexandra B.;
Dobson, Ellen T. A.;
Rueden, Curtis T.;
Tomancak, Pavel;
Jug, Florian;
Eliceiri, Kevin W.

Publication type:

Article

Calsyntenin-1 Regulates Axon Branching and Endosomal Trafficking during Sensory Neuron Development In Vivo.

Published in:

Journal of Neuroscience, 2014, v. 34, n. 28, p. 9235, doi. 10.1523/JNEUROSCI.0561-14.2014

By:

Ponomareva, Olga Y.;
Holmen, Ian C.;
Sperry, Aiden J.;
Eliceiri, Kevin W.;
Halloran, Mary C.

Publication type:

Article

SHARPIN regulates collagen architecture and ductal outgrowth in the developing mouse mammary gland.

Published in:

EMBO Journal, 2017, v. 36, n. 2, p. 165, doi. 10.15252/embj.201694387

By:

Peuhu, Emilia;
Kaukonen, Riina;
Lerche, Martina;
Saari, Markku;
Guzmán, Camilo;
Rantakari, Pia;
De Franceschi, Nicola;
Wärri, Anni;
Georgiadou, Maria;
Jacquemet, Guillaume;
Mattila, Elina;
Virtakoivu, Reetta;
Liu, Yuming;
Attieh, Youmna;
Silva, Kathleen A;
Betz, Timo;
Sundberg, John P;
Salmi, Marko;
Deugnier, Marie‐Ange;
Eliceiri, Kevin W

Publication type:

Article

ImageJ2: ImageJ for the next generation of scientific image data.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1934-z

By:

Rueden, Curtis T.;
Schindelin, Johannes;
Hiner, Mark C.;
De Zonia, Barry E.;
Walter, Alison E.;
Arena, Ellen T.;
Eliceiri, Kevin W.

Publication type:

Article

FunImageJ: a Lisp framework for scientific image processing.

Published in:

Bioinformatics, 2018, v. 34, n. 5, p. 899, doi. 10.1093/bioinformatics/btx710

By:

Harrington, Kyle I S;
Rueden, Curtis T;
Eliceiri, Kevin W

Publication type:

Article

Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2424, doi. 10.1093/bioinformatics/btx180

By:

Arganda-Carreras, Ignacio;
Kaynig, Verena;
Rueden, Curtis;
Eliceiri, Kevin W.;
Schindelin, Johannes;
Cardona, Albert;
Seung, H. Sebastian

Publication type:

Article

ImageJ-MATLAB: a bidirectional framework for scientific image analysis interoperability.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 629, doi. 10.1093/bioinformatics/btw681

By:

Hiner, Mark C.;
Rueden, Curtis T.;
Eliceiri, Kevin W.

Publication type:

Article

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1179, doi. 10.1093/bioinformatics/btr095

By:

Kamentsky, Lee;
Jones, Thouis R.;
Fraser, Adam;
Bray, Mark-Anthony;
Logan, David J.;
Madden, Katherine L.;
Ljosa, Vebjorn;
Rueden, Curtis;
Eliceiri, Kevin W.;
Carpenter, Anne E.

Publication type:

Article

Quantitative Histopathology of Stained Tissues using Color Spatial Light Interference Microscopy (cSLIM).

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-50143-x

By:

Majeed, Hassaan;
Keikhosravi, Adib;
Kandel, Mikhail E.;
Nguyen, Tan H.;
Liu, Yuming;
Kajdacsy-Balla, Andre;
Tangella, Krishnarao;
Eliceiri, Kevin W.;
Popescu, Gabriel

Publication type:

Article

STRUCTURED CORRELATION DETECTION WITH APPLICATION TO COLOCALIZATION ANALYSIS IN DUAL-CHANNEL FLUORESCENCE MICROSCOPIC IMAGING.

Published in:

Statistica Sinica, 2021, v. 31, n. 1, p. 333, doi. 10.5705/ss.202018.0230

By:

Shulei Wang;
Jianqing Fan;
Pocock, Ginger;
Arena, Ellen T.;
Eliceiri, Kevin W.;
Ming Yuan

Publication type:

Article

Lactation opposes pappalysin-1-driven pregnancy-associated breast cancer.

Published in:

EMBO Molecular Medicine, 2016, v. 8, n. 4, p. 388, doi. 10.15252/emmm.201606273

By:

Takabatake, Yukie;
Oxvig, Claus;
Nagi, Chandandeep;
Adelson, Kerin;
Jaffer, Shabnam;
Schmidt, Hank;
Keely, Patricia J;
Eliceiri, Kevin W;
Mandeli, John;
Germain, Doris

Publication type:

Article

Collagen organization of renal cell carcinoma differs between low and high grade tumors.

Published in:

2019

By:

Best, Sara L.;
Liu, Yuming;
Keikhosravi, Adib;
Drifka, Cole R.;
Woo, Kaitlin M.;
Mehta, Guneet S.;
Altwegg, Marie;
Thimm, Terra N.;
Houlihan, Matthew;
Bredfeldt, Jeremy S.;
Abel, E. Jason;
Huang, Wei;
Eliceiri, Kevin W.

Publication type:

journal article

SCIFIO: an extensible framework to support scientific image formats.

Published in:

2016

By:

Hiner, Mark C.;
Rueden, Curtis T.;
Eliceiri, Kevin W.

Publication type:

Product Review

Rhesus monkeys as a translational model for late‐onset Alzheimer's disease.

Published in:

Aging Cell, 2021, v. 20, n. 6, p. 1, doi. 10.1111/acel.13374

By:

Souder, Dylan C.;
Dreischmeier, Isabelle A.;
Smith, Alex B.;
Wright, Samantha;
Martin, Stephen A.;
Sagar, Md Abdul Kader;
Eliceiri, Kevin W.;
Salamat, Shahriar M.;
Bendlin, Barbara B.;
Colman, Ricki J.;
Beasley, T. Mark;
Anderson, Rozalyn M.

Publication type:

Article

PGC‐1a integrates a metabolism and growth network linked to caloric restriction.

Published in:

Aging Cell, 2019, v. 18, n. 5, p. N.PAG, doi. 10.1111/acel.12999

By:

Miller, Karl N.;
Clark, Josef P.;
Martin, Stephen A.;
Howell, Porsha R.;
Burhans, Maggie S.;
Haws, Spencer A.;
Johnson, Nathan B.;
Rhoads, Timothy W;
Pavelec, Derek M.;
Eliceiri, Kevin W.;
Roopra, Avtar S.;
Ntambi, James M.;
Denu, John M.;
Parks, Brian W.;
Anderson, Rozalyn M.

Publication type:

Article

Aging and caloric restriction impact adipose tissue, adiponectin, and circulating lipids.

Published in:

Aging Cell, 2017, v. 16, n. 3, p. 497, doi. 10.1111/acel.12575

By:

Miller, Karl N.;
Burhans, Maggie S.;
Clark, Josef P.;
Howell, Porsha R.;
Polewski, Michael A.;
DeMuth, Tyler M.;
Eliceiri, Kevin W.;
Lindstrom, Mary J.;
Ntambi, James M.;
Anderson, Rozalyn M.

Publication type:

Article