Works matching AU Eliceiri, Kevin W

Results: 121

Human pancreatic stellate cells modulate 3D collagen alignment to promote the migration of pancreatic ductal adenocarcinoma cells.

Published in:

Biomedical Microdevices, 2016, v. 18, n. 6, p. 1, doi. 10.1007/s10544-016-0128-1

By:

Drifka, Cole R.;
Loeffler, Agnes G.;
Esquibel, Corinne R.;
Weber, Sharon M.;
Eliceiri, Kevin W.;
Kao, W. John

Publication type:

Article

Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2424, doi. 10.1093/bioinformatics/btx180

By:

Arganda-Carreras, Ignacio;
Kaynig, Verena;
Rueden, Curtis;
Eliceiri, Kevin W.;
Schindelin, Johannes;
Cardona, Albert;
Seung, H. Sebastian

Publication type:

Article

ImageJ-MATLAB: a bidirectional framework for scientific image analysis interoperability.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 629, doi. 10.1093/bioinformatics/btw681

By:

Hiner, Mark C.;
Rueden, Curtis T.;
Eliceiri, Kevin W.

Publication type:

Article

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1179, doi. 10.1093/bioinformatics/btr095

By:

Kamentsky, Lee;
Jones, Thouis R.;
Fraser, Adam;
Bray, Mark-Anthony;
Logan, David J.;
Madden, Katherine L.;
Ljosa, Vebjorn;
Rueden, Curtis;
Eliceiri, Kevin W.;
Carpenter, Anne E.

Publication type:

Article

New Extensibility and Scripting Tools in the ImageJ Ecosystem.

Published in:

Current Protocols, 2021, v. 1, n. 8, p. 1, doi. 10.1002/cpz1.204

By:

Gahm, Niklas A.;
Rueden, Curtis T.;
Evans III, Edward L.;
Selzer, Gabriel;
Hiner, Mark C.;
Chacko, Jenu V.;
Dasong Gao;
Sherer, Nathan M.;
Eliceiri, Kevin W.

Publication type:

Article

Navigating the Collagen Jungle: The Biomedical Potential of Fiber Organization in Cancer.

Published in:

Bioengineering (Basel), 2021, v. 8, n. 2, p. 1, doi. 10.3390/bioengineering8020017

By:

Ouellette, Jonathan N.;
Drifka, Cole R.;
Pointer, Kelli B.;
Yuming Liu;
Lieberthal, Tyler J.;
Kao, W. John;
Kuo, John S.;
Loeffler, Agnes G.;
Eliceiri, Kevin W.

Publication type:

Article

Anthocyanin Vacuolar Inclusions Form by a Microautophagy Mechanism.

Published in:

Plant Cell, 2015, v. 27, n. 9, p. 2545, doi. 10.1105/tpc.15.00589

By:

Chanoca, Alexandra;
Kovinich, Nik;
Burkel, Brian;
Stecha, Samantha;
Bohorquez-Restrepo, Andres;
Ueda, Takashi;
Eliceiri, Kevin W.;
Grotewold, Erich;
Otegui, Marisa S.

Publication type:

Article

Targeted matrisome analysis identifies thrombospondin-2 and tenascin-C in aligned collagen stroma from invasive breast carcinoma.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-31126-w

By:

Tomko, Lucas A.;
Hill, Ryan C.;
Barrett, Alexander;
Szulczewski, Joseph M.;
Conklin, Matthew W.;
Eliceiri, Kevin W.;
Keely, Patricia J.;
Hansen, Kirk C.;
Ponik, Suzanne M.

Publication type:

Article

Multi-Modal Investigation of Metabolism in Murine Breast Cancer Cell Lines Using Fluorescence Lifetime Microscopy and Hyperpolarized 13C-Pyruvate Magnetic Resonance Spectroscopy.

Published in:

Metabolites (2218-1989), 2024, v. 14, n. 10, p. 550, doi. 10.3390/metabo14100550

By:

Erickson-Bhatt, Sarah;
Cox, Benjamin L.;
Macdonald, Erin;
Chacko, Jenu V.;
Begovatz, Paul;
Keely, Patricia J.;
Ponik, Suzanne M.;
Eliceiri, Kevin W.;
Fain, Sean B.

Publication type:

Article

Hyperpolarized 13 C Magnetic Resonance Spectroscopic Imaging of Pyruvate Metabolism in Murine Breast Cancer Models of Different Metastatic Potential.

Published in:

Metabolites (2218-1989), 2021, v. 11, n. 5, p. 274, doi. 10.3390/metabo11050274

By:

Macdonald, Erin B.;
Begovatz, Paul;
Barton, Gregory P.;
Erickson-Bhatt, Sarah;
Inman, David R.;
Cox, Benjamin L.;
Eliceiri, Kevin W.;
Strigel, Roberta M.;
Ponik, Suzanne M.;
Fain, Sean B.;
Martins, Andre F.;
Chaumeil, Myriam M.

Publication type:

Article

STRUCTURED CORRELATION DETECTION WITH APPLICATION TO COLOCALIZATION ANALYSIS IN DUAL-CHANNEL FLUORESCENCE MICROSCOPIC IMAGING.

Published in:

Statistica Sinica, 2021, v. 31, n. 1, p. 333, doi. 10.5705/ss.202018.0230

By:

Shulei Wang;
Jianqing Fan;
Pocock, Ginger;
Arena, Ellen T.;
Eliceiri, Kevin W.;
Ming Yuan

Publication type:

Article

A microfluidic coculture and multiphoton FAD analysis assay provides insight into the influence of the bone microenvironment on prostate cancer cells.

Published in:

Integrative Biology, 2014, v. 6, n. 6, p. 627, doi. 10.1039/c3ib40240a

By:

Bischel, Lauren L.;
Casavant, Benjamin P.;
Young, Pamela A.;
Eliceiri, Kevin W.;
Basu, Hirak S.;
Beebe, David J.

Publication type:

Article

Postpartum mammary gland involution drives progression of ductal carcinoma in situ through collagen and COX-2.

Published in:

Nature Medicine, 2011, v. 17, n. 9, p. 1109, doi. 10.1038/nm.2416

By:

Lyons, Traci R;
O'Brien, Jenean;
Borges, Virginia F;
Conklin, Matthew W;
Keely, Patricia J;
Eliceiri, Kevin W;
Marusyk, Andriy;
Tan, Aik-Choon;
Schedin, Pepper

Publication type:

Article

Association of collagen architecture with glioblastoma patient survival.

Published in:

Journal of Neurosurgery, 2017, v. 126, n. 6, p. 1812, doi. 10.3171/2016.6.JNS152797

By:

Pointer, Kelli B.;
Clark, Paul A.;
Schroeder, Alexandra B.;
Salamat, M. Shahriar;
Eliceiri, Kevin W.;
Kuo, John S.

Publication type:

Article

Evaluating the effectiveness of a lower extremity venous phantom on developing ultrasound examination skills and confidence.

Published in:

Ultrasound, 2021, v. 29, n. 1, p. 18, doi. 10.1177/1742271X20950777

By:

Mitchell, Carol;
Xiong, Pazee L;
Cox, Benjamin L;
Adoe, Maame A;
Cordio, Michelle M;
Quade, Tonya R;
Petry, George;
Eliceiri, Kevin W

Publication type:

Article

Association of cellular and molecular responses in the rat mammary gland to 17β-estradiol with susceptibility to mammary cancer.

Published in:

2013

By:

Ding, Lina;
Yang Zhao;
Warren, Christopher L.;
Sullivan, Ruth;
Eliceiri, Kevin W.;
Shull, James D.;
Zhao, Yang

Publication type:

journal article

Scientific Community Image Forum: A discussion forum for scientific image software.

Published in:

PLoS Biology, 2019, v. 17, n. 6, p. 1, doi. 10.1371/journal.pbio.3000340

By:

Rueden, Curtis T.;
Ackerman, Jeanelle;
Arena, Ellen T.;
Eglinger, Jan;
Cimini, Beth A.;
Goodman, Allen;
Carpenter, Anne E.;
Eliceiri, Kevin W.

Publication type:

Article

The ImageJ ecosystem: An open platform for biomedical image analysis.

Published in:

Molecular Reproduction & Development, 2015, v. 82, n. 7/8, p. 518, doi. 10.1002/mrd.22489

By:

Schindelin, Johannes;
Rueden, Curtis T.;
Hiner, Mark C.;
Eliceiri, Kevin W.

Publication type:

Article

2020 BioImage Analysis Survey: Community experiences and needs for the future.

Published in:

Biological Imaging, 2021, v. 1, p. e-1, doi. 10.1017/S2633903X21000039

By:

Jamali, Nasim;
Dobson, Ellen T. A.;
Eliceiri, Kevin W.;
Carpenter, Anne E.;
Cimini, Beth A.

Publication type:

Article

Metadata matters: access to image data in the real world.

Published in:

Journal of Cell Biology, 2010, v. 189, n. 5, p. 777, doi. 10.1083/jcb.201004104

By:

Linkert, Melissa;
Rueden, Curtis T.;
Allan, Chris;
Burel, Jean-Marie;
Moore, Will;
Patterson, Andrew;
Loranger, Brian;
Moore, Josh;
Neves, Carlos;
MacDonald, Donald;
Tarkowska, Aleksandra;
Sticco, Caitlin;
Hill, Emma;
Rossner, Mike;
Eliceiri, Kevin W.;
Swedlow, Jason R.

Publication type:

Article

Real-time polarization microscopy of fibrillar collagen in histopathology.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-98600-w

By:

Keikhosravi, Adib;
Shribak, Michael;
Conklin, Matthew W.;
Liu, Yuming;
Li, Bin;
Loeffler, Agnes;
Levenson, Richard M.;
Eliceiri, Kevin W.

Publication type:

Article

Dense Collagen-I Matrices Enhance Pro-Tumorigenic Estrogen-Prolactin Crosstalk in MCF-7 and T47D Breast Cancer Cells.

Published in:

PLoS ONE, 2015, v. 10, n. 1, p. 1, doi. 10.1371/journal.pone.0116891

By:

Barcus, Craig E.;
Holt, Elizabeth C.;
Keely, Patricia J.;
Eliceiri, Kevin W.;
Schuler, Linda A.

Publication type:

Article

A Three-Dimensional Computational Model of Collagen Network Mechanics.

Published in:

PLoS ONE, 2014, v. 9, n. 11, p. 1, doi. 10.1371/journal.pone.0111896

By:

Lee, Byoungkoo;
Zhou, Xin;
Riching, Kristin;
Eliceiri, Kevin W.;
Keely, Patricia J.;
Guelcher, Scott A.;
Weaver, Alissa M.;
Jiang, Yi

Publication type:

Article

Characterization of Fibrillar Collagens and Extracellular Matrix of Glandular Benign Prostatic Hyperplasia Nodules.

Published in:

PLoS ONE, 2014, v. 9, n. 10, p. 1, doi. 10.1371/journal.pone.0109102

By:

Bauman, Tyler M.;
Nicholson, Tristan M.;
Abler, Lisa L.;
Eliceiri, Kevin W.;
Huang, Wei;
Vezina, Chad M.;
Ricke, William A.

Publication type:

Article

Endogenous Fluorescence Signatures in Living Pluripotent Stem Cells Change with Loss of Potency.

Published in:

PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0043708

By:

Squirrell, Jayne M.;
Fong, Jimmy J.;
Ariza, Carlos A.;
Mael, Amber;
Meyer, Kassondra;
Shevde, Nirupama K.;
Roopra, Avtar;
Lyons, Gary E.;
Kamp, Timothy J.;
Eliceiri, Kevin W.;
Ogle, Brenda M.;
Qiang Wu

Publication type:

Article

CASPI: collaborative photon processing for active single-photon imaging.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38893-9

By:

Lee, Jongho;
Ingle, Atul;
Chacko, Jenu V.;
Eliceiri, Kevin W.;
Gupta, Mohit

Publication type:

Article

Quantitating the cell: turning images into numbers with ImageJ.

Published in:

WIREs: Developmental Biology, 2017, v. 6, n. 2, p. n/a, doi. 10.1002/wdev.260

By:

Arena, Ellen T;
Rueden, Curtis T;
Hiner, Mark C;
Wang, Shulei;
Yuan, Ming;
Eliceiri, Kevin W

Publication type:

Article

Calsyntenin-1 Regulates Axon Branching and Endosomal Trafficking during Sensory Neuron Development In Vivo.

Published in:

Journal of Neuroscience, 2014, v. 34, n. 28, p. 9235, doi. 10.1523/JNEUROSCI.0561-14.2014

By:

Ponomareva, Olga Y.;
Holmen, Ian C.;
Sperry, Aiden J.;
Eliceiri, Kevin W.;
Halloran, Mary C.

Publication type:

Article

SCIFIO: an extensible framework to support scientific image formats.

Published in:

2016

By:

Hiner, Mark C.;
Rueden, Curtis T.;
Eliceiri, Kevin W.

Publication type:

Product Review

Thermal Conductivity Measurement of Granular UO2(NO3)2 · 6H2O.

Published in:

Nuclear Technology, 2017, v. 197, n. 2, p. 191, doi. 10.13182/NT16-107

By:

Stange, Gary M.;
Corradini, Michael;
Swader, Robert;
Petry, George;
Mackie, Thomas R.;
Eliceiri, Kevin W.

Publication type:

Article

3D texture analysis for classification of second harmonic generation images of human ovarian cancer.

Published in:

Scientific Reports, 2016, p. 35734, doi. 10.1038/srep35734

By:

Wen, Bruce;
Campbell, Kirby R.;
Tilbury, Karissa;
Nadiarnykh, Oleg;
Brewer, Molly A.;
Patankar, Manish;
Singh, Vikas;
Eliceiri, Kevin. W.;
Campagnola, Paul J.

Publication type:

Article

In Vivo Visualization of Stromal Macrophages via label-free FLIM-based metabolite imaging.

Published in:

Scientific Reports, 2016, p. 25086, doi. 10.1038/srep25086

By:

Szulczewski, Joseph M.;
Inman, David R.;
Entenberg, David;
Ponik, Suzanne M.;
Aguirre-Ghiso, Julio;
Castracane, James;
Condeelis, John;
Eliceiri, Kevin W.;
Keely, Patricia J.

Publication type:

Article

Blue Light Modulates Murine Microglial Gene Expression in the Absence of Optogenetic Protein Expression.

Published in:

Scientific Reports, 2016, p. 21172, doi. 10.1038/srep21172

By:

Cheng, Kevin P.;
Kiernan, Elizabeth A.;
Eliceiri, Kevin W.;
Williams, Justin C.;
Watters, Jyoti J.

Publication type:

Article

Using fluorescence lifetime microscopy to study the subcellular localization of anthocyanins.

Published in:

Plant Journal, 2016, v. 88, n. 5, p. 895, doi. 10.1111/tpj.13297

By:

Chanoca, Alexandra;
Burkel, Brian;
Kovinich, Nik;
Grotewold, Erich;
Eliceiri, Kevin W.;
Otegui, Marisa S.

Publication type:

Article

Optical imaging of collagen fiber damage to assess thermally injured human skin.

Published in:

Wound Repair & Regeneration, 2020, v. 28, n. 6, p. 848, doi. 10.1111/wrr.12849

By:

Schroeder, Alexandra B.;
Karim, Aos;
Ocotl, Edgar;
Dones, Jesús M.;
Chacko, Jenu V.;
Liu, Aiping;
Raines, Ronald T.;
Gibson, Angela L. F.;
Eliceiri, Kevin W.

Publication type:

Article

Evolution of ischemia and neovascularization in a murine model of full thickness human wound healing.

Published in:

Wound Repair & Regeneration, 2020, v. 28, n. 6, p. 812, doi. 10.1111/wrr.12847

By:

Karim, Aos S.;
Liu, Aiping;
Lin, Christie;
Uselmann, Adam J.;
Eliceiri, Kevin W.;
Brown, Matthew E.;
Gibson, Angela L. F.

Publication type:

Article

Patterned optogenetic modulation of neurovascular and metabolic signals.

Published in:

Journal of Cerebral Blood Flow & Metabolism, 2015, v. 35, n. 1, p. 140, doi. 10.1038/jcbfm.2014.189

By:

Richner, Thomas J;
Baumgartner, Ryan;
Brodnick, Sarah K;
Azimipour, Mehdi;
Krugner-Higby, Lisa A;
Eliceiri, Kevin W;
Williams, Justin C;
Pashaie, Ramin

Publication type:

Article

The ImageJ Ecosystem: An Open and Extensible Platform for Biomedical Image Analysis.

Published in:

Microscopy & Microanalysis, 2017, v. 23, p. 226, doi. 10.1017/S1431927617001817

By:

Rueden, Curtis T.;
Eliceiri, Kevin W.

Publication type:

Article

Quantification of Collagen Organization and Extracellular Matrix Factors within the Healing Ligament.

Published in:

Microscopy & Microanalysis, 2011, v. 17, n. 5, p. 779, doi. 10.1017/S1431927611011925

By:

Chamberlain, Connie S.;
Crowley, Erin M.;
Kobayashi, Hirohito;
Eliceiri, Kevin W.;
Vanderby, Ray

Publication type:

Article

Multiphoton Flow Cytometry to Assess Intrinsic and Extrinsic Fluorescence in Cellular Aggregates: Applications to Stem Cells.

Published in:

Microscopy & Microanalysis, 2011, v. 17, n. 4, p. 540, doi. 10.1017/S1431927610000280

By:

Buschke, David G.;
Squirrell, Jayne M.;
Ansari, Hidayath;
Smith, Michael A.;
Rueden, Curtis T.;
Williams, Justin C.;
Lyons, Gary E.;
Kamp, Timothy J.;
Eliceiri, Kevin W.;
Ogle, Brenda M.

Publication type:

Article

Visualization of Morphological and Molecular Features Associated with Chronic Ischemia in Bioengineered Human Skin.

Published in:

Microscopy & Microanalysis, 2010, v. 16, n. 2, p. 117, doi. 10.1017/S1431927610000103

By:

Gill, Erin M.;
Straseski, Joely A.;
Rasmussen, Cathy A.;
Liliensiek, Sara J.;
Eliceiri, Kevin W.;
Ramanujam, Nirmala;
White, John G.;
Allen-Hoffmann, B. Lynn

Publication type:

Article

Wavelet Compression of Three-Dimensional Time-Lapse Biological Image Data.

Published in:

Microscopy & Microanalysis, 2005, v. 11, n. 1, p. 9, doi. 10.1017/s1431927605050014

By:

H. Narfi Stefansson;
Kevin W. Eliceiri;
Charles F. Thomas;
Amos Ron;
Ron DeVore;
Robert Sharpley;
John G. White

Publication type:

Article

Machine learning-assisted mid-infrared spectrochemical fibrillar collagen imaging in clinical tissues.

Published in:

Journal of Biomedical Optics, 2024, v. 29, n. 9, p. 1, doi. 10.1117/1.JBO.29.9.093511

By:

Adi, Wihan;
Perez, Bryan E. Rubio;
Yuming Liu;
Runkle, Sydney;
Eliceiri, Kevin W.;
Yesilkoy, Filiz

Publication type:

Article

To label or not: the need for validation in label-free imaging.

Published in:

Journal of Biomedical Optics, 2024, v. 29, p. 1, doi. 10.1117/1.JBO.29.S2.S22717

By:

Szulczewski, Joseph M.;
Yesilkoy, Filiz;
Ulland, Tyler K.;
Bartels, Randy;
Millis, Bryan A.;
Boppart, Stephen A.;
Eliceiri, Kevin W.

Publication type:

Article

Label-free fluorescence lifetime imaging for the assessment of cell viability in living tumor fragments.

Published in:

Journal of Biomedical Optics, 2024, v. 29, p. 1, doi. 10.1117/1.JBO.29.S2.S22709

By:

Smith, Jason T.;
Liu, Chao J.;
Degnan, Jeannine;
Ouellette, Jonathan N.;
Conklin, Matthew W.;
Kellner, Anna V.;
Scribano, Christina M.;
Hrycyniak, Laura;
Oliner, Jonathan D.;
Zahm, Chris;
Wait, Eric;
Eliceiri, Kevin W.;
Rafter, John

Publication type:

Article

Light-sheet autofluorescence lifetime imaging with a single-photon avalanche diode array.

Published in:

Journal of Biomedical Optics, 2023, v. 28, n. 6, p. 66502, doi. 10.1117/1.JBO.28.6.066502

By:

Samimi, Kayvan;
Desa, Danielle E.;
Lin, Wei;
Weiss, Kurt;
Li, Joe;
Huisken, Jan;
Miskolci, Veronika;
Huttenlocher, Anna;
Chacko, Jenu V.;
Velten, Andreas;
Rogers, Jeremy D.;
Eliceiri, Kevin W.;
Skala, Melissa C.

Publication type:

Article

Hardware-software co-design of an open-source automatic multimodal whole slide histopathology imaging system.

Published in:

Journal of Biomedical Optics, 2023, v. 28, n. 2, p. 26501, doi. 10.1117/1.JBO.28.2.026501

By:

Li, Bin;
Nelson, Michael S.;
Chacko, Jenu V.;
Cudworth, Nathan;
Eliceiri, Kevin W.

Publication type:

Article

Metabolic mapping of glioblastoma stem cells reveals NADH fluxes associated with glioblastoma phenotype and survival.

Published in:

Journal of Biomedical Optics, 2020, v. 25, n. 3, p. 36502, doi. 10.1117/1.JBO.25.3.036502

By:

Schroeder, Alexandra B.;
Pointer, Kelli B.;
Clark, Paul A.;
Datta, Rupsa;
Kuo, John S.;
Eliceiri, Kevin W.

Publication type:

Article

Optical fiber-based dispersion for spectral discrimination in fluorescence lifetime imaging systems.

Published in:

Journal of Biomedical Optics, 2020, v. 25, n. 1, p. 14506, doi. 10.1117/1.JBO.25.1.014506

By:

Sagar, Md Abdul Kader;
Dai, Bing;
Chacko, Jenu V.;
Weber, Joshua J.;
Velten, Andreas;
Sanders, Scott T.;
White, John G.;
Eliceiri, Kevin W.

Publication type:

Article

Computational segmentation of collagen fibers from second-harmonic generation images of breast cancer.

Published in:

Journal of Biomedical Optics, 2014, v. 19, n. 1, p. 1, doi. 10.1117/1.JBO.19.1.016007

By:

Bredfeldt, Jeremy S.;
Yuming Liu;
Pehlke, Carolyn A.;
Conklin, Matthew W.;
Szulczewski, Joseph M.;
Inman, David R.;
Keely, Patricia J.;
Nowak, Robert D.;
Mackie, Thomas R.;
Eliceiri, Kevin W.

Publication type:

Article