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In Silico Predicted Robustness of Viroid RNA Secondary Structures. II. Interaction between Mutation Pairs.
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- Molecular Biology & Evolution, 2006, v. 23, n. 11, p. 2123, doi. 10.1093/molbev/msl083
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- Article
In Silico Predicted Robustness of Viroids RNA Secondary Structures. I. The Effect of Single Mutations.
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- Molecular Biology & Evolution, 2006, v. 23, n. 7, p. 1427, doi. 10.1093/molbev/msl005
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- Article
Genetic diversity of the movement and coat protein genes of South American isolates of Prunus necrotic ringspot virus.
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- Archives of Virology, 2008, v. 153, n. 5, p. 909, doi. 10.1007/s00705-008-0066-1
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- Article
Defects in plant immunity modulate the rates and patterns of RNA virus evolution.
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- Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac059
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- Article
genome-wide association study identifies Arabidopsis thaliana genes that contribute to differences in the outcome of infection with two Turnip mosaic potyvirus strains that differ in their evolutionary history and degree of host specialization.
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- Virus Evolution, 2021, v. 7, n. 2, p. 1, doi. 10.1093/ve/veab063
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- Article
Increasing temperature alters the within-host competition of viral strains and influences virus genetic variability.
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- Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab017
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- Article
Adaptation of turnip mosaic potyvirus to a specific niche reduces its genetic and environmental robustness.
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- Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa041
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- Article
Modeling multipartite virus evolution: the genome formula facilitates rapid adaptation to heterogeneous environments<sup>†</sup>.
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- Virus Evolution, 2020, v. 6, n. 1, p. 1, doi. 10.1093/ve/veaa022
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- Article
Role of host genetic diversity for susceptibility-to-infection in the evolution of virulence of a plant virus.
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- Virus Evolution, 2019, v. 5, n. 2, p. N.PAG, doi. 10.1093/ve/vez024
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- Article
Corrigendum: Variability in mutational fitness effects prevents full lethal transitions in large quasispecies populations.
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- Scientific Reports, 2015, p. 11167, doi. 10.1038/srep11167
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- Article
Global-scale computational analysis of genomic sequences reveals the recombination pattern and coevolution dynamics of cereal-infecting geminiviruses.
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- Scientific Reports, 2015, p. 8153, doi. 10.1038/srep08153
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- Article
Variability in mutational fitness effects prevents full lethal transitions in large quasispecies populations.
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- Scientific Reports, 2014, p. 1, doi. 10.1038/srep04625
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- Article
Bridging quasispecies theory and social evolution models for sociovirology insights: a commentary on Leeks et al. 2023.
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- Journal of Evolutionary Biology, 2023, v. 36, n. 11, p. 1590, doi. 10.1111/jeb.14229
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- Article
Rate of deleterious mutation and the distribution of its effects on fitness in vesicular stomatitis virus.
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- Journal of Evolutionary Biology, 1999, v. 12, n. 6, p. 1078, doi. 10.1046/j.1420-9101.1999.00110.x
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- Article
Topology analysis and visualization of Potyvirus protein-protein interaction network
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- BMC Systems Biology, 2014, v. 8, n. 1, p. 129, doi. 10.1186/s12918-014-0129-8
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- Article
Robust dynamical pattern formation from a multifunctional minimal genetic circuit.
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- BMC Systems Biology, 2010, v. 4, p. 48, doi. 10.1186/1752-0509-4-48
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- Article
Viral Fitness Determines the Magnitude of Transcriptomic and Epigenomic Reprograming of Defense Responses in Plants.
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- Molecular Biology & Evolution, 2020, v. 37, n. 7, p. 1866, doi. 10.1093/molbev/msaa091
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- Article
Viral Fitness Correlates with the Magnitude and Direction of the Perturbation Induced in the Host's Transcriptome: The Tobacco Etch Potyvirus—Tobacco Case Study.
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- Molecular Biology & Evolution, 2018, v. 35, n. 7, p. 1599, doi. 10.1093/molbev/msy038
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- Article
Temporal Dynamics of Intrahost Molecular Evolution for a Plant RNA Virus.
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- Molecular Biology & Evolution, 2015, v. 32, n. 5, p. 1132, doi. 10.1093/molbev/msv028
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- Article
Experimental Evolution of Pseudogenization and Gene Loss in a Plant RNA Virus.
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- Molecular Biology & Evolution, 2014, v. 31, n. 1, p. 121, doi. 10.1093/molbev/mst175
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- Article
Ultradeep Sequencing Analysis of Population Dynamics of Virus Escape Mutants in RNAi-Mediated Resistant Plants.
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- Molecular Biology & Evolution, 2012, v. 29, n. 11, p. 3297
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- Article
Multihost Experimental Evolution of a Plant RNA Virus Reveals Local Adaptation and Host-Specific Mutations.
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- Molecular Biology & Evolution, 2012, v. 29, n. 5, p. 1481, doi. 10.1093/molbev/msr314
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- Article
Compensatory Molecular Evolution of HC-Pro, an RNA-Silencing Suppressor from a Plant RNA Virus.
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- Molecular Biology & Evolution, 2010, v. 27, n. 3, p. 543, doi. 10.1093/molbev/msp272
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- Article
Revisiting Orthotospovirus phylogeny using full-genome data and testing the contribution of selection, recombination and segment reassortment in the origin of members of new species.
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- Archives of Virology, 2021, v. 166, n. 2, p. 491, doi. 10.1007/s00705-020-04902-1
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- Article
Complete nucleotide sequence of a novel mycovirus from Trichoderma harzianum in China.
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- Archives of Virology, 2019, v. 164, n. 4, p. 1213, doi. 10.1007/s00705-019-04145-9
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- Article
HC-Pro hypo- and hypersuppressor mutants: differences in viral siRNA accumulation in vivo and siRNA binding activity in vitro.
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- 2010
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- Publication type:
- Report
GroEL buffers against deleterious mutations.
- Published in:
- Nature, 2002, v. 417, n. 6887, p. 398, doi. 10.1038/417398a
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- Article
The evolution of sex: empirical insights into the roles of epistasis and drift.
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- Nature Reviews Genetics, 2007, v. 8, n. 2, p. 139, doi. 10.1038/nrg1985
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- Article
Microbial genetics: Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation.
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- Nature Reviews Genetics, 2003, v. 4, n. 6, p. 457, doi. 10.1038/nrg1088
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- Article
Intraclonal variation in RNA viruses: generation, maintenance and consequences.
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- Biological Journal of the Linnean Society, 2003, v. 79, n. 1, p. 17, doi. 10.1046/j.1095-8312.2003.00173.x
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- Article
Mutagenesis Scanning Uncovers Evolutionary Constraints on Tobacco Etch Potyvirus Membrane-Associated 6K2 Protein.
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- Genome Biology & Evolution, 2019, v. 11, n. 4, p. 1207, doi. 10.1093/gbe/evz069
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- Article
Engineered Functional Redundancy Relaxes Selective Constraints upon Endogenous Genes in Viral RNA Genomes.
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- Genome Biology & Evolution, 2018, v. 10, n. 7, p. 1823, doi. 10.1093/gbe/evy141
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- Article
2b or Not 2b: Experimental Evolution of Functional Exogenous Sequences in a Plant RNA Virus.
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- Genome Biology & Evolution, 2017, v. 9, n. 2, p. 297, doi. 10.1093/gbe/evw300
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- Article
Predicting the Stability of Homologous Gene Duplications in a Plant RNA Virus.
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- Genome Biology & Evolution, 2016, v. 8, n. 9, p. 3065, doi. 10.1093/gbe/evw219
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- Article
Shrinkage of Genome Size in a Plant RNA Virus upon Transfer of an Essential Viral Gene into the Host Genome.
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- Genome Biology & Evolution, 2014, v. 6, n. 3, p. 538, doi. 10.1093/gbe/evu036
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- Article
MicroRNA Precursors Are Not Structurally Robust but Plastic.
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- Genome Biology & Evolution, 2013, v. 5, n. 1, p. 181, doi. 10.1093/gbe/evs132
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- Article
STABILITY OF A STOCHASTICALLY PERTURBED MODEL OF INTRACELLULAR SINGLE-STRANDED RNA VIRUS REPLICATION.
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- Journal of Biological Systems, 2019, v. 27, n. 1, p. 69, doi. 10.1142/S0218339019500049
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- Article
Genetic Diversity of Tomato Black Ring Virus Satellite RNAs and Their Impact on Virus Replication.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 16, p. 9393, doi. 10.3390/ijms23169393
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- Article
Why are viral genomes so fragile? The bottleneck hypothesis.
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- PLoS Computational Biology, 2021, v. 17, n. 7, p. 1, doi. 10.1371/journal.pcbi.1009128
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- Article
Genome-wide association studies of viral infections--A short guide to a successful experimental and statistical analysis.
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- Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.1005758
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- Article
Multiple Barriers to the Evolution of Alternative Gene Orders in a Positive-Strand RNA Virus.
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- Genetics, 2016, v. 202, n. 4, p. 1503, doi. 10.1534/genetics.115.185017
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- Article
Measuring Selection Coefficients Below 1023: Method, Questions, and Prospects.
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- Genetics, 2012, v. 190, n. 1, p. 175, doi. 10.1534/genetics.111.133454
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- Article
Genetic variability and evolutionary dynamics of tomato black ring virus population.
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- Plant Pathology, 2021, v. 70, n. 6, p. 1521, doi. 10.1111/ppa.13382
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- Article
Molecular evolution of tomato black ring virus and de novo generation of a new type of defective RNAs during long‐term passaging in different hosts.
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- Plant Pathology, 2020, v. 69, n. 9, p. 1767, doi. 10.1111/ppa.13258
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- Article
Distributions of epistasis in microbes fit predictions from a fitness landscape model.
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- Nature Genetics, 2007, v. 39, n. 4, p. 555, doi. 10.1038/ng1998
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- Article
Interaction network of tobacco etch potyvirus NIa protein with the host proteome during infection.
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- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2394-y
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- Article
Virus Satellites Drive Viral Evolution and Ecology.
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- PLoS Genetics, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pgen.1005609
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- Article
Within-Host Spatiotemporal Dynamics of Plant Virus Infection at the Cellular Level.
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- PLoS Genetics, 2014, v. 10, n. 2, p. 1, doi. 10.1371/journal.pgen.1004186
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- Article
Effect of Host Species on the Distribution of Mutational Fitness Effects for an RNA Virus.
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- PLoS Genetics, 2011, v. 7, n. 11, p. 1, doi. 10.1371/journal.pgen.1002378
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- Article
A binary interaction map between turnip mosaic virus and Arabidopsis thaliana proteomes.
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- Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-04427-8
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- Article