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Did the early full genome sequencing of yeast boost gene function discovery?
- Published in:
- Biology Direct, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13062-023-00403-8
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- Publication type:
- Article
About the dark corners in the gene function space of Escherichia coli remaining without illumination by scientific literature.
- Published in:
- Biology Direct, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13062-023-00362-0
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- Publication type:
- Article
SPACER: server for predicting allosteric communication and effects of regulation.
- Published in:
- Nucleic Acids Research, 2013, v. 41, p. W266, doi. 10.1093/nar/gkt460
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- Publication type:
- Article
ANNIE: integrated de novo protein sequence annotation.
- Published in:
- Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W435, doi. 10.1093/nar/gkp254
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- Publication type:
- Article
The 160K Natural Organism Library, a unique resource for natural products research.
- Published in:
- Nature Biotechnology, 2018, v. 36, n. 7, p. 570, doi. 10.1038/nbt.4187
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- Publication type:
- Article
To kill or to be killed: pangenome analysis of Escherichia coli strains reveals a tailocin specific for pandemic ST131.
- Published in:
- BMC Biology, 2022, v. 20, n. 1, p. 1, doi. 10.1186/s12915-022-01347-7
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- Publication type:
- Article
Transition steps in peroxide reduction and a molecular switch for peroxide robustness of prokaryotic peroxiredoxins.
- Published in:
- Scientific Reports, 2016, p. 37610, doi. 10.1038/srep37610
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- Publication type:
- Article
Single-residue posttranslational modification sites at the N-terminus, C-terminus or in-between: To be or not to be exposed for enzyme access.
- Published in:
- Proteomics, 2015, v. 15, n. 14, p. 2525, doi. 10.1002/pmic.201400633
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- Publication type:
- Article
Prediction of sequence signals for lipid post-translational modifications: Insights from case studies.
- Published in:
- Proteomics, 2004, v. 4, n. 6, p. 1614, doi. 10.1002/pmic.200300781
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- Publication type:
- Article
Low-resolution structure of the soluble domain GPAA1 (yGPAA1<sup>70-247</sup>) of the glycosylphosphatidylinositol transamidase subunit GPAA1 from Saccharomyces cerevisiae.
- Published in:
- Bioscience Reports, 2013, v. 33, n. 2, p. 361, doi. 10.1042/BSR20120107
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- Publication type:
- Article
Genome-wide loss-of-function analysis of deubiquitylating enzymesfor zebrafish development.
- Published in:
- BMC Genomics, 2009, v. 10, p. 637, doi. 10.1186/1471-2164-10-637
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- Publication type:
- Article
On the necessity of dissecting sequence similarity scores into segment-specific contributions for inferring protein homology, function prediction and annotation.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-166
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- Publication type:
- Article
Proteins with two SUMO-like domains in chromatin-associated complexes: The RENi (Rad60-Esc2-NIP45) family.
- Published in:
- BMC Bioinformatics, 2005, v. 6, p. 22, doi. 10.1186/1471-2105-6-22
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- Publication type:
- Article
Prediction of lipid posttranslational modifications and localization signals from protein sequences: big-Π, NMT and PTS1.
- Published in:
- Nucleic Acids Research, 2003, v. 31, n. 13, p. 3631, doi. 10.1093/nar/gkg537
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- Publication type:
- Article
Enzymes and auxiliary factors for GPI lipid anchor biosynthesis and post-translational transfer to proteins.
- Published in:
- BioEssays, 2003, v. 25, n. 4, p. 367, doi. 10.1002/bies.10254
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- Publication type:
- Article
On filtering false positive transmembrane protein predictions.
- Published in:
- Protein Engineering, 2002, v. 15, n. 9, p. 745, doi. 10.1093/protein/15.9.745
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- Publication type:
- Article
Post-translational GPI lipid anchor modification of proteins in kingdoms of life: analysis of protein sequence data from complete genomes.
- Published in:
- Protein Engineering, 2001, v. 14, n. 1, p. 17, doi. 10.1093/protein/14.1.17
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- Publication type:
- Article
PSIC: profile extraction from sequence alignments with position-specific counts of independent observations.
- Published in:
- Protein Engineering, 1999, v. 12, n. 5, p. 387, doi. 10.1093/protein/12.5.387
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- Publication type:
- Article
NMR studies reveal a novel grab and release mechanism for efficient catalysis of the bacterial 2-Cys peroxiredoxin machinery.
- Published in:
- FEBS Journal, 2015, v. 282, n. 23, p. 4620, doi. 10.1111/febs.13522
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- Publication type:
- Article
Darkness in the Human Gene and Protein Function Space: Widely Modest or Absent Illumination by the Life Science Literature and the Trend for Fewer Protein Function Discoveries Since 2000.
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- Proteomics, 2018, v. 18, n. 21/22, p. N.PAG, doi. 10.1002/pmic.201800093
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- Publication type:
- Article
Erratum to: Charged residues next to transmembrane regions revisited: 'Positive-inside rule' is complemented by the 'negative inside depletion/outside enrichment rule'.
- Published in:
- BMC Biology, 2017, v. 15, n. 1, p. 1, doi. 10.1186/s12915-017-0410-6
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- Publication type:
- Article
Charged residues next to transmembrane regions revisited: 'Positive-inside rule' is complemented by the 'negative inside depletion/outside enrichment rule'.
- Published in:
- BMC Biology, 2017, v. 15, n. 1, p. 1, doi. 10.1186/s12915-017-0404-4
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- Publication type:
- Article
Charged residues next to transmembrane regions revisited: "Positive-inside rule" is complemented by the "negative inside depletion/outside enrichment rule".
- Published in:
- BMC Biology, 2017, v. 15, p. 1, doi. 10.1186/s12915-017-0404-4
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- Publication type:
- Article
Identification and engineering of 32 membered antifungal macrolactone notonesomycins.
- Published in:
- Microbial Cell Factories, 2020, v. 19, n. 1, p. 1, doi. 10.1186/s12934-020-01328-x
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- Publication type:
- Article
Conserved sequence motifs in human TMTC1, TMTC2, TMTC3, and TMTC4, new O-mannosyltransferases from the GT-C/PMT clan, are rationalized as ligand binding sites.
- Published in:
- Biology Direct, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13062-021-00291-w
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- Publication type:
- Article
Structural modelling of the lumenal domain of human GPAA1, the metallo-peptide synthetase subunit of the transamidase complex, reveals zinc-binding mode and two flaps surrounding the active site.
- Published in:
- Biology Direct, 2020, v. 15, n. 1, p. N.PAG, doi. 10.1186/s13062-020-00266-3
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- Publication type:
- Article
xHMMER3x2: Utilizing HMMER3's speed and HMMER2's sensitivity and specificity in the glocal alignment mode for improved large-scale protein domain annotation.
- Published in:
- Biology Direct, 2016, v. 11, p. 1, doi. 10.1186/s13062-016-0163-0
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- Publication type:
- Article
dissectHMMER: a HMMER-based score dissection framework that statistically evaluates fold-critical sequence segments for domain fold similarity.
- Published in:
- Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0068-3
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- Publication type:
- Article
Genomics-driven discovery of a biosynthetic gene cluster required for the synthesis of BII-Rafflesfungin from the fungus Phoma sp. F3723.
- Published in:
- BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-5762-6
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- Publication type:
- Article
Molecular mechanism of the Escherichia coli AhpC in the function of a chaperone under heat-shock conditions.
- Published in:
- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-32527-7
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- Publication type:
- Article
Species specific membrane anchoring of nyctalopin, a small leucine-rich repeat protein.
- Published in:
- Human Molecular Genetics, 2005, v. 14, n. 13, p. 1877, doi. 10.1093/hmg/ddi194
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- Publication type:
- Article
Prenylation of viral proteins by enzymes of the host: Virus-driven rationale for therapy with statins and FT/GGT1 inhibitors.
- Published in:
- BioEssays, 2017, v. 39, n. 10, p. n/a, doi. 10.1002/bies.201700014
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- Publication type:
- Article
Correction: Cserző et al. The First Quarter Century of the Dense Alignment Surface Transmembrane Prediction Method. Int. J. Mol. Sci. 2023 , 24 , 14016.
- Published in:
- 2024
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- Publication type:
- Correction Notice
The First Quarter Century of the Dense Alignment Surface Transmembrane Prediction Method.
- Published in:
- International Journal of Molecular Sciences, 2023, v. 24, n. 18, p. 14016, doi. 10.3390/ijms241814016
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- Publication type:
- Article
HPMV: Human protein mutation viewer - relating sequence mutations to protein sequence architecture and function changes.
- Published in:
- Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 5, p. -1, doi. 10.1142/S0219720015500286
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- Publication type:
- Article
BEWARE OF MOVING TARGETS: REFERENCE PROTEOME CONTENT FLUCTUATES SUBSTANTIALLY OVER THE YEARS.
- Published in:
- Journal of Bioinformatics & Computational Biology, 2012, v. 10, n. 6, p. -1, doi. 10.1142/S0219720012500205
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- Publication type:
- Article
Post-translational Regulation of Radioactive Iodine Therapy Response in Papillary Thyroid Carcinoma.
- Published in:
- 2017
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- Publication type:
- journal article