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Evolutionary analyses of intrinsically disordered regions reveal widespread signals of conservation.
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- PLoS Computational Biology, 2024, v. 20, n. 4, p. 1, doi. 10.1371/journal.pcbi.1012028
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- Article
Intrinsic protein disorder is insufficient to drive subnuclear clustering in embryonic transcription factors.
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- eLife, 2024, p. 1, doi. 10.7554/eLife.88221
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- Article
Peer review without gatekeeping.
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- eLife, 2022, p. 1, doi. 10.7554/eLife.83889
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- Article
Single-nucleus RNA-sequencing in pre-cellularization Drosophila melanogaster embryos.
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- PLoS ONE, 2022, v. 17, n. 6, p. 1, doi. 10.1371/journal.pone.0270471
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- Article
Rapid global phaseout of animal agriculture has the potential to stabilize greenhouse gas levels for 30 years and offset 68 percent of CO<sub>2</sub> emissions this century.
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- PLoS Climate, 2022, p. 1, doi. 10.1371/journal.pclm.0000010
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- Article
Impact of essential workers in the context of social distancing for epidemic control.
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- PLoS ONE, 2021, v. 16, n. 8, p. 1, doi. 10.1371/journal.pone.0255680
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- Article
Rigorous review and editorial oversight of clinical preprints.
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- eLife, 2021, p. 1, doi. 10.7554/eLife.67528
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- Article
Kinetic sculpting of the seven stripes of the Drosophila even-skipped gene.
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- eLife, 2021, p. 1, doi. 10.7554/eLife.61635
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- Article
Implementing a "publish, then review" model of publishing.
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- eLife, 2020, p. 1, doi. 10.7554/eLife.64910
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- Article
Whole Genome Sequences of 23 Species from the Drosophila montium Species Group (Diptera: Drosophilidae): A Resource for Testing Evolutionary Hypotheses.
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- G3: Genes | Genomes | Genetics, 2020, v. 10, n. 5, p. 1443, doi. 10.1534/g3.119.400959
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- Article
Publishing in the time of COVID-19: eLife is making changes to its policies on peer review in response to the impact of COVID-19 on the scientific community.
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- eLife, 2020, p. 1, doi. 10.7554/eLife.57162
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- Article
Convergent evolution of gene expression in two high-toothed stickleback populations.
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- PLoS Genetics, 2018, v. 14, n. 6, p. 1, doi. 10.1371/journal.pgen.1007443
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- Article
The ecology of the Drosophila-yeast mutualism in wineries.
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- PLoS ONE, 2018, v. 13, n. 5, p. 1, doi. 10.1371/journal.pone.0196440
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- Article
Patterns of chromatin accessibility along the anterior-posterior axis in the early Drosophila embryo.
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- PLoS Genetics, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pgen.1007367
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- Article
Convergence of topological domain boundaries, insulators, and polytene interbands revealed by high-resolution mapping of chromatin contacts in the early Drosophila melanogaster embryo.
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- eLife, 2017, p. 1, doi. 10.7554/eLife.29550.001
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- Article
A molecular atlas of the developing ectoderm defines neural, neural crest, placode, and nonneural progenitor identity in vertebrates.
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- PLoS Biology, 2017, v. 15, n. 10, p. 1, doi. 10.1371/journal.pbio.2004045
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- Article
Patterns of Genome-Wide Diversity and Population Structure in the Drosophila athabasca Species Complex.
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- Molecular Biology & Evolution, 2017, v. 34, n. 8, p. 1912, doi. 10.1093/molbev/msx134
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- Article
Stable Host Gene Expression in the Gut of Adult Drosophila melanogaster with Different Bacterial Mono-Associations.
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- PLoS ONE, 2016, v. 11, n. 11, p. 1, doi. 10.1371/journal.pone.0167357
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- Article
The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion.
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- eLife, 2016, p. 1, doi. 10.7554/eLife.20062
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- Article
Sex Bias and Maternal Contribution to Gene Expression Divergence in Drosophila Blastoderm Embryos.
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- PLoS Genetics, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pgen.1005592
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- Article
Ten Years of PLoS<sup>‡</sup> Computational Biology: A Decade of Appreciation and Innovation.
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- 2015
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- Editorial
Saccharomyces cerevisiae Mitochondria Are Required for Optimal Attractiveness to Drosophila melanogaster.
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- PLoS ONE, 2014, v. 9, n. 12, p. 1, doi. 10.1371/journal.pone.0113899
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- Article
Structural Variation among Wild and Industrial Strains of <i>Penicillium chrysogenum</i>.
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- PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0096784
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- Article
<i>Drosophila</i> Embryogenesis Scales Uniformly across Temperature in Developmentally Diverse Species.
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- PLoS Genetics, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pgen.1004293
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- Article
Sex-Specific Embryonic Gene Expression in Species with Newly Evolved Sex Chromosomes.
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- PLoS Genetics, 2014, v. 10, n. 2, p. 1, doi. 10.1371/journal.pgen.1004159
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- Article
Extensive Divergence of Transcription Factor Binding in <i>Drosophila</i> Embryos with Highly Conserved Gene Expression.
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- PLoS Genetics, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pgen.1003748
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- Article
Mice Infected with Low-Virulence Strains of <i>Toxoplasma gondii</i> Lose Their Innate Aversion to Cat Urine, Even after Extensive Parasite Clearance.
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- PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0075246
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- Article
Sequencing mRNA from Cryo-Sliced <i>Drosophila</i> Embryos to Determine Genome-Wide Spatial Patterns of Gene Expression.
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- PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0071820
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- Article
An Essential Role for Zygotic Expression in the Pre-Cellular Drosophila Embryo.
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- PLoS Genetics, 2013, v. 9, n. 4, p. 1, doi. 10.1371/journal.pgen.1003428
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- Article
Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence.
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-95
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- Article
Spatial Promoter Recognition Signatures May Enhance Transcription Factor Specificity in Yeast.
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- PLoS ONE, 2013, v. 8, n. 1, p. 1, doi. 10.1371/journal.pone.0053778
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- Article
Probing the Informational and Regulatory Plasticity of a Transcription Factor DNA--Binding Domain.
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- PLoS Genetics, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pgen.1002614
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- Article
A Conserved Developmental Patterning Network Produces Quantitatively Different Output in Multiple Species of Drosophila.
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- PLoS Genetics, 2011, v. 7, n. 10, p. 1, doi. 10.1371/journal.pgen.1002346
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- Article
Zelda Binding in the Early Drosophila melanogaster Embryo Marks Regions Subsequently Activated at the Maternal-to-Zygotic Transition.
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- PLoS Genetics, 2011, v. 7, n. 10, p. 1, doi. 10.1371/journal.pgen.1002266
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- Article
Quantitative Models of the Mechanisms That Control Genome-Wide Patterns of Transcription Factor Binding during Early Drosophila Development.
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- PLoS Genetics, 2011, v. 7, n. 2, p. 1, doi. 10.1371/journal.pgen.1001290
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- Article
The Fitness Landscapes of cis-Acting Binding Sites in Different Promoter and Environmental Contexts.
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- PLoS Genetics, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pgen.1001042
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- Article
Exploring the Genetic Basis of Variation in Gene Predictions with a Synthetic Association Study.
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- PLoS ONE, 2010, v. 5, n. 7, p. 1, doi. 10.1371/journal.pone.0011645
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- Article
Binding Site Turnover Produces Pervasive Quantitative Changes in Transcription Factor Binding between Closely Related Drosophila Species.
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- PLoS Biology, 2010, v. 8, n. 3, p. 1, doi. 10.1371/journal.pbio.1000343
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- Article
Evolutionary Mirages: Selection on Binding Site Composition Creates the Illusion of Conserved Grammars in Drosophila Enhancers.
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- PLoS Genetics, 2010, v. 6, n. 1, p. 1, doi. 10.1371/journal.pgen.1000829
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- Article
Identifying Cis-Regulatory Sequences by Word Profile Similarity.
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- PLoS ONE, 2009, v. 4, n. 9, p. 1, doi. 10.1371/journal.pone.0006901
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- Article
Genome-Wide Transcriptional Response of Silurana (Xenopus) tropicalis to Infection with the Deadly Chytrid Fungus.
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- PLoS ONE, 2009, v. 4, n. 8, p. 1, doi. 10.1371/journal.pone.0006494
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- Article
Impact of Chromatin Structures on DNA Processing for Genomic Analyses.
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- PLoS ONE, 2009, v. 4, n. 8, p. 1, doi. 10.1371/journal.pone.0006700
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- Article
Big Genomes Facilitate the Comparative Identification of Regulatory Elements.
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- PLoS ONE, 2009, v. 4, n. 3, p. 1, doi. 10.1371/journal.pone.0004688
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- Article
A Careful Look at Binding Site Reorganization in the even-skipped Enhancers of Drosophila and Sepsids.
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- 2008
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- Publication type:
- Opinion
Silent but Not Static: Accelerated Base-Pair Substitution in Silenced Chromatin of Budding Yeasts.
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- PLoS Genetics, 2008, v. 4, n. 11, p. 1, doi. 10.1371/journal.pgen.1000247
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- Publication type:
- Article
Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation.
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- PLoS Genetics, 2008, v. 4, n. 6, p. 1, doi. 10.1371/journal.pgen.1000106
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- Article
Automatic image analysis for gene expression patterns of fly embryos.
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- BMC Cell Biology, 2007, v. 8, p. S7, doi. 10.1186/1471-2121-8-S1-S7
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- Article
In vivo enhancer analysis of human conserved non-coding sequences.
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- Nature, 2006, v. 444, n. 7118, p. 499, doi. 10.1038/nature05295
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- Article
Large-Scale Turnover of Functional Transcription Factor Binding Sites in Drosophila.
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- PLoS Computational Biology, 2006, v. 2, n. 10, p. 1219, doi. 10.1371/journal.pcbi.0020130
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- Article
Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting.
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- PLoS Genetics, 2006, v. 3, n. 4, p. 1634, doi. 10.1371/journal.pgen.0020173
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- Article