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GTDrift: a resource for exploring the interplay between genetic drift, genomic and transcriptomic characteristics in eukaryotes.
- Published in:
- NAR Genomics & Bioinformatics, 2024, v. 6, n. 2, p. 1, doi. 10.1093/nargab/lqae064
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- Publication type:
- Article
Bridging the gap between the evolutionary dynamics and the molecular mechanisms of meiosis: A model based exploration of the PRDM9 intra-genomic Red Queen.
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- PLoS Genetics, 2024, v. 20, n. 5, p. 1, doi. 10.1371/journal.pgen.1011274
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- Publication type:
- Article
Random genetic drift sets an upper limit on mRNA splicing accuracy in metazoans.
- Published in:
- eLife, 2024, p. 1, doi. 10.7554/eLife.93629
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- Publication type:
- Article
Population designations in biomedical research: Limitations and perspectives.
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- HLA: Immune Response Genetics, 2023, v. 101, n. 1, p. 3, doi. 10.1111/tan.14852
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- Publication type:
- Article
DILS: Demographic inferences with linked selection by using ABC.
- Published in:
- Molecular Ecology Resources, 2021, v. 21, n. 8, p. 2629, doi. 10.1111/1755-0998.13323
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- Publication type:
- Article
Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes.
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- PLoS Biology, 2021, v. 19, n. 7, p. 1, doi. 10.1371/journal.pbio.3001309
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- Publication type:
- Article
Evolutionary Plasticity of Mating-Type Determination Mechanisms in Paramecium aurelia Sibling Species.
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- Genome Biology & Evolution, 2021, v. 13, n. 2, p. 1, doi. 10.1093/gbe/evaa258
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- Publication type:
- Article
Bedrock radioactivity influences the rate and spectrum of mutation.
- Published in:
- eLife, 2020, p. 1, doi. 10.7554/eLife.56830
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- Publication type:
- Article
How consistent is RAD‐seq divergence with DNA‐barcode based clustering in insects?
- Published in:
- Molecular Ecology Resources, 2020, v. 20, n. 5, p. 1294, doi. 10.1111/1755-0998.13178
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- Publication type:
- Article
Population genomics supports clonal reproduction and multiple independent gains and losses of parasitic abilities in the most devastating nematode pest.
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- Evolutionary Applications, 2020, v. 13, n. 2, p. 442, doi. 10.1111/eva.12881
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- Publication type:
- Article
Evolution of replication origins in vertebrate genomes: rapid turnover despite selective constraints.
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- Nucleic Acids Research, 2019, v. 47, n. 10, p. 5114, doi. 10.1093/nar/gkz182
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- Publication type:
- Article
Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods.
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- Molecular Biology & Evolution, 2019, v. 36, n. 3, p. 641, doi. 10.1093/molbev/msy247
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- Publication type:
- Article
Global survey of mobile DNA horizontal transfer in arthropods reveals Lepidoptera as a prime hotspot.
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- PLoS Genetics, 2019, v. 15, n. 2, p. 1, doi. 10.1371/journal.pgen.1007965
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- Publication type:
- Article
GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes.
- Published in:
- Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1613-z
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- Publication type:
- Article
Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods.
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- Molecular Biology & Evolution, 2018, v. 35, n. 12, p. 2900, doi. 10.1093/molbev/msy184
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- Publication type:
- Article
Codon Usage Bias in Animals: Disentangling the Effects of Natural Selection, Effective Population Size, and GC-Biased Gene Conversion.
- Published in:
- Molecular Biology & Evolution, 2018, v. 35, n. 5, p. 1092, doi. 10.1093/molbev/msy015
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- Publication type:
- Article
Unbiased Estimate of Synonymous and Nonsynonymous Substitution Rates with Nonstationary Base Composition.
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- Molecular Biology & Evolution, 2018, v. 35, n. 3, p. 734, doi. 10.1093/molbev/msx308
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- Publication type:
- Article
The fitness cost of mis-splicing is the main determinant of alternative splicing patterns.
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- Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1344-6
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- Publication type:
- Article
Recombination, meiotic expression and human codon usage.
- Published in:
- eLife, 2017, p. 1, doi. 10.7554/eLife.27344.001
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- Publication type:
- Article
How and how much does RAD-seq bias genetic diversity estimates?
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- BMC Evolutionary Biology, 2016, v. 16, p. 1, doi. 10.1186/s12862-016-0791-0
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- Publication type:
- Article
No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes.
- Published in:
- Molecular Biology & Evolution, 2016, v. 33, n. 10, p. 2605, doi. 10.1093/molbev/msw131
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- Publication type:
- Article
Occurrence of a non deleterious gene conversion event in the BRCA 1 gene.
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- Genes, Chromosomes & Cancer, 2015, v. 54, n. 10, p. 646, doi. 10.1002/gcc.22278
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- Publication type:
- Article
Optimization of multiplexed RADseq libraries using low-cost adaptors.
- Published in:
- Genetica, 2015, v. 143, n. 2, p. 139, doi. 10.1007/s10709-015-9828-3
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- Publication type:
- Article
GC-Content Evolution in Bacterial Genomes: The Biased Gene Conversion Hypothesis Expands.
- Published in:
- PLoS Genetics, 2015, v. 11, n. 2, p. 1, doi. 10.1371/journal.pgen.1004941
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- Publication type:
- Article
The Red Queen Model of Recombination Hotspots Evolution in the Light of Archaic and Modern Human Genomes.
- Published in:
- PLoS Genetics, 2014, v. 10, n. 11, p. 1, doi. 10.1371/journal.pgen.1004790
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- Publication type:
- Article
Estimation of the RNU2 macrosatellite mutation rate by BRCA1 mutation tracing.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 14, p. 9121, doi. 10.1093/nar/gku639
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- Publication type:
- Article
The Spatiotemporal Program of DNA Replication Is Associated with Specific Combinations of Chromatin Marks in Human Cells.
- Published in:
- PLoS Genetics, 2014, v. 10, n. 5, p. 1, doi. 10.1371/journal.pgen.1004282
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- Publication type:
- Article
Strong Heterogeneity in Mutation Rate Causes Misleading Hallmarks of Natural Selection on Indel Mutations in the Human Genome.
- Published in:
- Molecular Biology & Evolution, 2014, v. 31, n. 1, p. 23, doi. 10.1093/molbev/mst185
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- Publication type:
- Article
GC-Biased Gene Conversion in Yeast Is Specifically Associated with Crossovers: Molecular Mechanisms and Evolutionary Significance.
- Published in:
- Molecular Biology & Evolution, 2013, v. 30, n. 6, p. 1409, doi. 10.1093/molbev/mst056
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- Publication type:
- Article
XACT, a long non-coding transcript coating the active X chromosome in human pluripotent cells.
- Published in:
- 2013
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- Publication type:
- Conference Paper
Is RAD‐seq suitable for phylogenetic inference? An in silico assessment and optimization.
- Published in:
- Ecology & Evolution (20457758), 2013, v. 3, n. 4, p. 846, doi. 10.1002/ece3.512
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- Publication type:
- Article
XACT, a long noncoding transcript coating the active X chromosome in human pluripotent cells.
- Published in:
- Nature Genetics, 2013, v. 45, n. 3, p. 239, doi. 10.1038/ng.2530
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- Publication type:
- Article
The Paramecium Germline Genome Provides a Niche for Intragenic Parasitic DNA: Evolutionary Dynamics of Internal Eliminated Sequences.
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- PLoS Genetics, 2012, v. 8, n. 10, p. 1, doi. 10.1371/journal.pgen.1002984
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- Publication type:
- Article
Evidence for Widespread GC-biased Gene Conversion in Eukaryotes.
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- Genome Biology & Evolution, 2012, v. 4, n. 9, p. 675, doi. 10.1093/gbe/evs052
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- Publication type:
- Article
Evidence for Widespread GC-biased Gene Conversion in Eukaryotes.
- Published in:
- Genome Biology & Evolution, 2012, v. 4, n. 7, p. 675, doi. 10.1093/gbe/evs052
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- Publication type:
- Article
High-quality sequence clustering guided by network topology and multiple alignment likelihood.
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- Bioinformatics, 2012, v. 28, n. 8, p. 1078, doi. 10.1093/bioinformatics/bts098
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- Publication type:
- Article
Preventing Dangerous Nonsense: Selection for Robustness to Transcriptional Error in Human Genes.
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- PLoS Genetics, 2011, v. 7, n. 10, p. 1, doi. 10.1371/journal.pgen.1002276
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- Publication type:
- Article
Ftx is a non-coding RNA which affects Xist expression and chromatin structure within the X-inactivation center region.
- Published in:
- Human Molecular Genetics, 2011, v. 20, n. 4, p. 705, doi. 10.1093/hmg/ddq516
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- Publication type:
- Article
Meiotic recombination favors the spreading of deleterious mutations in human populations.
- Published in:
- Human Mutation, 2011, v. 32, n. 2, p. 198, doi. 10.1002/humu.21407
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- Publication type:
- Article
Ultra-fast sequence clustering from similarity networks with SiLiX.
- Published in:
- 2011
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- Publication type:
- Product Review
Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia.
- Published in:
- BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-547
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- Publication type:
- Article
The Relationship among Gene Expression, the Evolution of Gene Dosage, and the Rate of Protein Evolution.
- Published in:
- PLoS Genetics, 2010, v. 6, n. 5, p. 1, doi. 10.1371/journal.pgen.1000944
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- Publication type:
- Article
Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia.
- Published in:
- BMC Genomics, 2010, v. 11, p. 547, doi. 10.1186/1471-2164-11-547
- By:
- Publication type:
- Article
Differential Retention of Metabolic Genes Following Whole-Genome Duplication.
- Published in:
- Molecular Biology & Evolution, 2009, v. 26, n. 5, p. 1067, doi. 10.1093/molbev/msp026
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- Publication type:
- Article
The Relationship between DNA Replication and Human Genome Organization.
- Published in:
- Molecular Biology & Evolution, 2009, v. 26, n. 4, p. 729, doi. 10.1093/molbev/msn303
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- Publication type:
- Article
Mutation Patterns in the Human Genome: More Variable Than Expected.
- Published in:
- PLoS Biology, 2009, v. 7, n. 2, p. e1000028, doi. 10.1371/journal.pbio.1000028
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- Publication type:
- Article
Databases of homologous gene families for comparative genomics.
- Published in:
- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S6-S3
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- Publication type:
- Article
The Impact of Recombination on Nucleotide Substitutions in the Human Genome.
- Published in:
- PLoS Genetics, 2008, v. 4, n. 5, p. 1, doi. 10.1371/journal.pgen.1000071
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- Publication type:
- Article
Translational control of intron splicing in eukaryotes.
- Published in:
- Nature, 2008, p. 359, doi. 10.1038/nature06495
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- Publication type:
- Article
Identification and characterization of human Mex-3 proteins, a novel family of evolutionarily conserved RNA-binding proteins differentially localized to processing bodies.
- Published in:
- Nucleic Acids Research, 2007, v. 35, n. 4, p. 1289, doi. 10.1093/nar/gkm016
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- Publication type:
- Article