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Author Correction: Biological heterogeneity in idiopathic pulmonary arterial hypertension identified through unsupervised transcriptomic profiling of whole blood.
Published in:
2022
By:
- Kariotis, Sokratis;
- Jammeh, Emmanuel;
- Swietlik, Emilia M.;
- Pickworth, Josephine A.;
- Rhodes, Christopher J.;
- Otero, Pablo;
- Wharton, John;
- Iremonger, James;
- Dunning, Mark J.;
- Pandya, Divya;
- Mascarenhas, Thomas S.;
- Errington, Niamh;
- Thompson, A. A. Roger;
- Romanoski, Casey E.;
- Rischard, Franz;
- Garcia, Joe G. N.;
- Yuan, Jason X.-J.;
- An, Tae-Hwi Schwantes;
- Desai, Ankit A.;
- Coghlan, Gerry
Publication type:
Correction Notice
Identification of potential therapeutic targets in prostate cancer through a cross-species approach.
Published in:
EMBO Molecular Medicine, 2018, v. 10, n. 3, p. 1, doi. 10.15252/emmm.201708274
By:
- Jurmeister, Sarah;
- Ramos‐Montoya, Antonio;
- Sandi, Chiranjeevi;
- Pértega‐Gomes, Nelma;
- Wadhwa, Karan;
- Lamb, Alastair D;
- Dunning, Mark J;
- Attig, Jan;
- Carroll, Jason S;
- Fryer, Lee GD;
- Felisbino, Sérgio L;
- Neal, David E
Publication type:
Article
ZNF703 is a common Luminal B breast cancer oncogene that differentially regulates luminal and basal progenitors in human mammary epithelium.
Published in:
EMBO Molecular Medicine, 2011, v. 3, n. 3, p. 167, doi. 10.1002/emmm.201100122
By:
- Holland, Daniel G.;
- Burleigh, Angela;
- Git, Anna;
- Goldgraben, Mae A.;
- Perez-Mancera, Pedro A.;
- Chin, Suet-Feung;
- Hurtado, Antonio;
- Bruna, Alejandra;
- Ali, H. Raza;
- Greenwood, Wendy;
- Dunning, Mark J.;
- Samarajiwa, Shamith;
- Menon, Suraj;
- Rueda, Oscar M.;
- Lynch, Andy G.;
- McKinney, Steven;
- Ellis, Ian O.;
- Eaves, Connie J.;
- Carroll, Jason S.;
- Curtis, Christina
Publication type:
Article
Multimodal assessment of mitochondrial function in Parkinson's disease.
Published in:
Brain: A Journal of Neurology, 2024, v. 147, n. 1, p. 267, doi. 10.1093/brain/awad364
By:
- Payne, Thomas;
- Burgess, Toby;
- Bradley, Stephen;
- Roscoe, Sarah;
- Sassani, Matilde;
- Dunning, Mark J;
- Hernandez, Dena;
- Scholz, Sonja;
- McNeill, Alisdair;
- Taylor, Rosie;
- Su, Li;
- Wilkinson, Iain;
- Jenkins, Thomas;
- Mortiboys, Heather;
- Bandmann, Oliver
Publication type:
Article
Identification and validation of DOCK4 as a potential biomarker for risk of bone metastasis development in patients with early breast cancer.
Published in:
Journal of Pathology, 2019, v. 247, n. 3, p. 381, doi. 10.1002/path.5197
By:
- Westbrook, Jules A;
- Wood, Steven L;
- Cairns, David A;
- McMahon, Kathryn;
- Gahlaut, Renu;
- Thygesen, Helene;
- Shires, Mike;
- Roberts, Stephanie;
- Marshall, Helen;
- Oliva, Maria R;
- Dunning, Mark J;
- Hanby, Andrew M;
- Selby, Peter J;
- Speirs, Valerie;
- Mavria, Georgia;
- Coleman, Robert E;
- Brown, Janet E
Publication type:
Article
Distinct Concentration-Dependent Molecular Pathways Regulate Bone Cell Responses to Cobalt and Chromium Exposure from Joint Replacement Prostheses.
Published in:
International Journal of Molecular Sciences, 2021, v. 22, n. 10, p. 5225, doi. 10.3390/ijms22105225
By:
- Shah, Karan M.;
- Dunning, Mark J.;
- Gartland, Alison;
- Wilkinson, J. Mark;
- Pavalko, Fredrick M.
Publication type:
Article
The failure of microglia to digest developmental apoptotic cells contributes to the pathology of RNASET2‐deficient leukoencephalopathy.
Published in:
Glia, 2020, v. 68, n. 7, p. 1531, doi. 10.1002/glia.23829
By:
- Hamilton, Noémie;
- Rutherford, Holly A.;
- Petts, Jessica J.;
- Isles, Hannah M.;
- Weber, Thomas;
- Henneke, Marco;
- Gärtner, Jutta;
- Dunning, Mark J.;
- Renshaw, Stephen A.
Publication type:
Article
Hyaluronan nanoscale clustering and Hyaluronan synthase 2 expression are linked to the invasion of child fibroblasts and infantile fibrosarcoma in vitro and in vivo.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-21952-4
By:
- Tonge, Joseph J.;
- Notley, Scott V.;
- Dunning, Mark J.;
- López-Guajardo, Ana;
- Medcalf, Jessica D.;
- Heldin, Paraskevi;
- Panoutsos, George;
- Gad, Annica K. B.
Publication type:
Article
A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data.
Published in:
Nucleic Acids Research, 2010, v. 38, n. 3, p. e17, doi. 10.1093/nar/gkp942
By:
- Barbosa-Morais, Nuno L.;
- Dunning, Mark J.;
- Samarajiwa, Shamith A.;
- Darot, Jeremy F. J.;
- Ritchie, Matthew E.;
- Lynch, Andy G.;
- Tavaré, Simon
Publication type:
Article
Biological heterogeneity in idiopathic pulmonary arterial hypertension identified through unsupervised transcriptomic profiling of whole blood.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27326-0
By:
- Kariotis, Sokratis;
- Jammeh, Emmanuel;
- Swietlik, Emilia M.;
- Pickworth, Josephine A.;
- Rhodes, Christopher J.;
- Otero, Pablo;
- Wharton, John;
- Iremonger, James;
- Dunning, Mark J.;
- Pandya, Divya;
- Mascarenhas, Thomas S.;
- Errington, Niamh;
- Thompson, A. A. Roger;
- Romanoski, Casey E.;
- Rischard, Franz;
- Garcia, Joe G. N.;
- Yuan, Jason X.-J.;
- An, Tae-Hwi Schwantes;
- Desai, Ankit A.;
- Coghlan, Gerry
Publication type:
Article
Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis.
Published in:
Nature Genetics, 2014, v. 46, n. 8, p. 837, doi. 10.1038/ng.3013
By:
- Weaver, Jamie M J;
- Ross-Innes, Caryn S;
- Shannon, Nicholas;
- Lynch, Andy G;
- Forshew, Tim;
- Barbera, Mariagnese;
- Murtaza, Muhammed;
- Ong, Chin-Ann J;
- Lao-Sirieix, Pierre;
- Dunning, Mark J;
- Smith, Laura;
- Smith, Mike L;
- Anderson, Charlotte L;
- Carvalho, Benilton;
- O'Donovan, Maria;
- Underwood, Timothy J;
- May, Andrew P;
- Grehan, Nicola;
- Hardwick, Richard;
- Davies, Jim
Publication type:
Article
Calling Sample Mix-Ups in Cancer Population Studies.
Published in:
PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0041815
By:
- Lynch, Andy G.;
- Suet-Feung Chin;
- Dunning, Mark J.;
- Caldas, Carlos;
- Tavaré, Simon;
- Curtis, Christina;
- Toland, Amanda Ewart
Publication type:
Article
Whole-Blood RNA Profiles Associated with Pulmonary Arterial Hypertension and Clinical Outcome.
Published in:
2020
By:
- Rhodes, Christopher J.;
- Otero-Núñez, Pablo;
- Wharton, John;
- Swietlik, Emilia M.;
- Kariotis, Sokratis;
- Harbaum, Lars;
- Dunning, Mark J.;
- Elinoff, Jason M.;
- Errington, Niamh;
- Thompson, A. A. Roger;
- Iremonger, James;
- Coghlan, J. Gerry;
- Corris, Paul A.;
- Howard, Luke S.;
- Kiely, David G.;
- Church, Colin;
- Pepke-Zaba, Joanna;
- Toshner, Mark;
- Wort, Stephen J.;
- Desai, Ankit A.
Publication type:
journal article
The pitfalls of platform comparison: DNA copy numberarray technologies assessed.
Published in:
BMC Genomics, 2009, v. 10, p. 588, doi. 10.1186/1471-2164-10-588
By:
- Curtis, Christina;
- Lynch, Andy G.;
- Dunning, Mark J.;
- Spiteri, Inmaculada;
- Marioni, John C.;
- Hadfield, James;
- Suet-Feung Chin;
- Brenton, James D.;
- Tavaré, Simon;
- Caldas, Carlos
Publication type:
Article
Identification and correction of previouslyunreported spatial phenomena using raw IlluminaBeadArray data.
Published in:
BMC Bioinformatics, 2010, v. 11, p. 208, doi. 10.1186/1471-2105-11-208
By:
- Smith, Mike L.;
- Dunning, Mark J.;
- Tavaré, Simon;
- Lynch, Andy G.
Publication type:
Article
Statistical issues in the analysis of Illumina data.
Published in:
BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-85
By:
- Dunning, Mark J.;
- Barbosa-Morais, Nuno L.;
- Lynch, Andy G.;
- Tavaré, Simon;
- Ritchie, Matthew E.
Publication type:
Article
BeadArray Expression Analysis Using Bioconductor.
Published in:
PLoS Computational Biology, 2011, v. 7, n. 12, p. 1, doi. 10.1371/journal.pcbi.1002276
By:
- Ritchie, Matthew E.;
- Dunning, Mark J.;
- Smith, Mike L.;
- Wei Shi;
- Lynch, Andy G.
Publication type:
Article
5-hydroxymethylcytosine marks promoters in colon that resist DNA hypermethylation in cancer.
Published in:
Genome Biology, 2015, v. 16, n. 1, p. 69, doi. 10.1186/s13059-015-0605-5
By:
- Uribe-Lewis, Santiago;
- Stark, Rory;
- Carroll, Thomas;
- Dunning, Mark J;
- Bachman, Martin;
- Yoko Ito;
- Stojic, Lovorka;
- Silvia Halim;
- Vowler, Sarah L;
- Lynch, Andy G;
- Delatte, Benjamin;
- de Bony, Eric J;
- Colin, Laurence;
- Defrance, Matthieu;
- Krueger, Felix;
- Silva, Ana-Luisa;
- Hoopen, Rogier ten;
- Ibrahim, Ashraf EK;
- Fuks, François;
- Murrell, Adele
Publication type:
Article
Genome-driven integrated classification of breast cancer validated in over 7,500 samples.
Published in:
Genome Biology, 2014, v. 15, n. 8, p. 1, doi. 10.1186/s13059-014-0431-1
By:
- Ali, H. Raza;
- Rueda, Oscar M.;
- Suet-Feung Chin;
- Curtis, Christina;
- Dunning, Mark J.;
- Aparicio, Samuel A. J. R.;
- Caldas, Carlos
Publication type:
Article
Fostering accessible online education using Galaxy as an e-learning platform.
Published in:
PLoS Computational Biology, 2021, v. 17, n. 5, p. 1, doi. 10.1371/journal.pcbi.1008923
By:
- Serrano-Solano, Beatriz;
- Föll, Melanie C.;
- Gallardo-Alba, Cristóbal;
- Erxleben, Anika;
- Rasche, Helena;
- Hiltemann, Saskia;
- Fahrner, Matthias;
- Dunning, Mark J.;
- Schulz, Marcel H.;
- Scholtz, Beáta;
- Clements, Dave;
- Nekrutenko, Anton;
- Batut, Bérénice;
- Grüning, Björn A.
Publication type:
Article
Quantitative Image Analysis of Cellular Heterogeneity in Breast Tumors Complements Genomic Profiling.
Published in:
Science Translational Medicine, 2012, v. 4, n. 157, p. 1, doi. 10.1126/scitranslmed.3004330
By:
- Yinyin Yuan;
- Failmezger, Henrik;
- Rueda, Oscar M.;
- Ali, H. Raza;
- Gräf, Stefan;
- Suet-Feung Chin;
- Schwarz, Roland F.;
- Curtis, Christina;
- Dunning, Mark J.;
- Bardwell, Helen;
- Johnson, Nicola;
- Doyle, Sarah;
- Turashvili, Gulisa;
- Provenzano, Elena;
- Aparicio, Sam;
- Caldas, Carlos;
- Markowetz, Florian
Publication type:
Article
A Double‐Blind, Randomized, Placebo‐Controlled Trial of Ursodeoxycholic Acid (UDCA) in Parkinson's Disease.
Published in:
Movement Disorders, 2023, v. 38, n. 8, p. 1493, doi. 10.1002/mds.29450
By:
- Payne, Thomas;
- Appleby, Matthew;
- Buckley, Ellen;
- van Gelder, Linda M.A.;
- Mullish, Benjamin H.;
- Sassani, Matilde;
- Dunning, Mark J.;
- Hernandez, Dena;
- Scholz, Sonja W.;
- McNeill, Alisdair;
- Libri, Vincenzo;
- Moll, Sarah;
- Marchesi, Julian R.;
- Taylor, Rosie;
- Su, Li;
- Mazzà, Claudia;
- Jenkins, Thomas M.;
- Foltynie, Thomas;
- Bandmann, Oliver
Publication type:
Article
The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups.
Published in:
Nature, 2012, v. 486, n. 7403, p. 346, doi. 10.1038/nature10983
By:
- Curtis, Christina;
- Shah, Sohrab P.;
- Chin, Suet-Feung;
- Turashvili, Gulisa;
- Rueda, Oscar M.;
- Dunning, Mark J.;
- Speed, Doug;
- Lynch, Andy G.;
- Samarajiwa, Shamith;
- Yuan, Yinyin;
- Gräf, Stefan;
- Ha, Gavin;
- Haffari, Gholamreza;
- Bashashati, Ali;
- Russell, Roslin;
- McKinney, Steven;
- Caldas, Carlos;
- Aparicio, Samuel;
- Curtis†, Christina;
- Brenton, James D.
Publication type:
Article
Differential oestrogen receptor binding is associated with clinical outcome in breast cancer.
Published in:
Nature, 2012, v. 481, n. 7381, p. 389, doi. 10.1038/nature10730
By:
- Ross-Innes, Caryn S.;
- Stark, Rory;
- Teschendorff, Andrew E.;
- Holmes, Kelly A.;
- Ali, H. Raza;
- Dunning, Mark J.;
- Brown, Gordon D.;
- Gojis, Ondrej;
- Ellis, Ian O.;
- Green, Andrew R.;
- Ali, Simak;
- Chin, Suet-Feung;
- Palmieri, Carlo;
- Caldas, Carlos;
- Carroll, Jason S.
Publication type:
Article
beadarray: R classes and methods for Illumina bead-based data.
Published in:
Bioinformatics, 2007, v. 23, n. 16, p. 2183, doi. 10.1093/bioinformatics/btm311
By:
- Mark J. Dunning;
- Mike L. Smith;
- Matthew E. Ritchie;
- Simon TavarÃ©
Publication type:
Article
The cost of reducing starting RNA quantity for Illumina BeadArrays: A bead-level dilution experiment.
Published in:
BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-540
By:
- Lynch, Andy G;
- Hadfield, James;
- Dunning, Mark J;
- Osborne, Michelle;
- Thorne, Natalie P;
- Tavaré, Simon
Publication type:
Article
The cost of reducing starting RNA quantity for Illumina BeadArrays: A bead-level dilution experiment.
Published in:
BMC Genomics, 2010, v. 11, p. 540, doi. 10.1186/1471-2164-11-540
By:
- Lynch, Andy G.;
- Hadfield, James;
- Dunning, Mark J.;
- Osborne, Michelle;
- Thorne, Natalie P.;
- Tavaré, Simon
Publication type:
Article
A tumor DNA complex aberration index is an independent predictor of survival in breast and ovarian cancer.
Published in:
Molecular Oncology, 2015, v. 9, n. 1, p. 115, doi. 10.1016/j.molonc.2014.07.019
By:
- Vollan, Hans Kristian Moen;
- Rueda, Oscar M.;
- Chin, Suet-Feung;
- Curtis, Christina;
- Turashvili, Gulisa;
- Shah, Sohrab;
- Lingjærde, Ole Christian;
- Yuan, Yinyin;
- Ng, Charlotte K.;
- Dunning, Mark J.;
- Dicks, Ed;
- Provenzano, Elena;
- Sammut, Stephen;
- McKinney, Steven;
- Ellis, Ian O.;
- Pinder, Sarah;
- Purushotham, Arnie;
- Murphy, Leigh C.;
- Kristensen, Vessela N.;
- Brenton, James D.
Publication type:
Article

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