Found: 14

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  • Streptococcus gordonii Supragingival Bacterium Oral Infection-Induced Periodontitis and Robust miRNA Expression Kinetics.

    Published in:
    International Journal of Molecular Sciences, 2024, v. 25, n. 11, p. 6217, doi. 10.3390/ijms25116217
    By:
    • Aravindraja, Chairmandurai;
    • Jeepipalli, Syam;
    • Duncan, William D.;
    • Vekariya, Krishna Mukesh;
    • Rahaman, Shaik O.;
    • Chan, Edward K. L.;
    • Kesavalu, Lakshmyya
    Publication type:
    Article

  • Aligning Standards Communities for Omics Biodiversity Data: Sustainable Darwin Core-MIxS Interoperability.

    Published in:
    Biodiversity Data Journal, 2023, p. 1, doi. 10.3897/BDJ.11.e112420
    By:
    • Meyer, Raïssa;
    • Appeltans, Ward;
    • Duncan, William D.;
    • Dimitrova, Mariya;
    • Yi-Ming Gan;
    • Stjernegaard Jeppesen, Thomas;
    • Mungall, Christopher;
    • Paul, Deborah L.;
    • Provoost, Pieter;
    • Robertson, Tim;
    • Schriml, Lynn;
    • Suominen, Saara;
    • Walls, Ramona;
    • Sweetlove, Maxime;
    • Ung, Visotheary;
    • Van de Putte, Anton;
    • Wallis, Elycia;
    • Wieczorek, John;
    • Buttigieg, Pier Luigi
    Publication type:
    Article

  • Improving the Quality and Utility of Electronic Health Record Data through Ontologies.

    Published in:
    Standards (2305-6703), 2023, v. 3, n. 3, p. 316, doi. 10.3390/standards3030023
    By:
    • Lin, Asiyah Yu;
    • Arabandi, Sivaram;
    • Beale, Thomas;
    • Duncan, William D.;
    • Hicks, Amanda;
    • Hogan, William R.;
    • Jensen, Mark;
    • Koppel, Ross;
    • Martínez-Costa, Catalina;
    • Nytrø, Øystein;
    • Obeid, Jihad S.;
    • Oliveira, Jose Parente de;
    • Ruttenberg, Alan;
    • Seppälä, Selja;
    • Smith, Barry;
    • Soergel, Dagobert;
    • Zheng, Jie;
    • Schulz, Stefan
    Publication type:
    Article

  • The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond.

    Published in:
    Journal of Biomedical Semantics, 2023, v. 14, n. 1, p. 1, doi. 10.1186/s13326-023-00283-x
    By:
    • Chan, Lauren E.;
    • Thessen, Anne E.;
    • Duncan, William D.;
    • Matentzoglu, Nicolas;
    • Schmitt, Charles;
    • Grondin, Cynthia J.;
    • Vasilevsky, Nicole;
    • McMurry, Julie A.;
    • Robinson, Peter N.;
    • Mungall, Christopher J.;
    • Haendel, Melissa A.
    Publication type:
    Article

  • National Microbiome Data Collaborative Data Portal: an integrated multi-omics microbiome data resource.

    Published in:
    Nucleic Acids Research, 2022, v. 50, n. D1, p. D828, doi. 10.1093/nar/gkab990
    By:
    • Eloe-Fadrosh, Emiley A;
    • Ahmed, Faiza;
    • Anubhav;
    • Babinski, Michal;
    • Baumes, Jeffrey;
    • Borkum, Mark;
    • Bramer, Lisa;
    • Canon, Shane;
    • Christianson, Danielle S;
    • Corilo, Yuri E;
    • Davenport, Karen W;
    • Davis, Brandon;
    • Drake, Meghan;
    • Duncan, William D;
    • Flynn, Mark C;
    • Hays, David;
    • Hu, Bin;
    • Huntemann, Marcel;
    • Kelliher, Julia;
    • Lebedeva, Sofya
    Publication type:
    Article

  • Simple Standard for Sharing Ontological Mappings (SSSOM).

    Published in:
    Database: The Journal of Biological Databases & Curation, 2022, v. 2022, p. 1, doi. 10.1093/database/baac035
    By:
    • Matentzoglu, Nicolas;
    • Balhoff, James P;
    • Bello, Susan M;
    • Bizon, Chris;
    • Brush, Matthew;
    • Callahan, Tiffany J;
    • Chute, Christopher G;
    • Duncan, William D;
    • Evelo, Chris T;
    • Gabriel, Davera;
    • Graybeal, John;
    • Gray, Alasdair;
    • Gyori, Benjamin M;
    • Haendel, Melissa;
    • Harmse, Henriette;
    • Harris, Nomi L;
    • Harrow, Ian;
    • Hegde, Harshad B;
    • Hoyt, Amelia L;
    • Hoyt, Charles T
    Publication type:
    Article

  • Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2022, v. 2022, p. 1, doi. 10.1093/database/baac087
    By:
    • Matentzoglu, Nicolas;
    • Goutte-Gattat, Damien;
    • Tan, Shawn Zheng Kai;
    • Balhoff, James P;
    • Carbon, Seth;
    • Caron, Anita R;
    • Duncan, William D;
    • Flack, Joe E;
    • Haendel, Melissa;
    • Harris, Nomi L;
    • Hogan, William R;
    • Hoyt, Charles Tapley;
    • Jackson, Rebecca C;
    • Kim, HyeongSik;
    • Kir, Huseyin;
    • Larralde, Martin;
    • McMurry, Julie A;
    • Overton, James A;
    • Peters, Bjoern;
    • Pilgrim, Clare
    Publication type:
    Article

  • Aligning Standards Communities: Sustainable Darwin Core MIxS Interoperability.

    Published in:
    Biodiversity Information Science & Standards, 2021, p. 1, doi. 10.3897/biss.5.73775
    By:
    • Meyer, Raïssa;
    • Buttigieg, Pier Luigi;
    • Wieczorek, John;
    • Jeppesen, Thomas Stjernegaard;
    • Duncan, William D.;
    • Yi-Ming Gan;
    • Sweetlove, Maxime;
    • Suominen, Saara
    Publication type:
    Article

  • OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab069
    By:
    • Jackson, Rebecca;
    • Matentzoglu, Nicolas;
    • Overton, James A;
    • Vita, Randi;
    • Balhoff, James P;
    • Buttigieg, Pier Luigi;
    • Carbon, Seth;
    • Courtot, Melanie;
    • Diehl, Alexander D;
    • Dooley, Damion M;
    • Duncan, William D;
    • Harris, Nomi L;
    • Haendel, Melissa A;
    • Lewis, Suzanna E;
    • Natale, Darren A;
    • Osumi-Sutherland, David;
    • Ruttenberg, Alan;
    • Schriml, Lynn M;
    • Smith, Barry;
    • Stoeckert Jr., Christian J
    Publication type:
    Article

  • Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology.

    Published in:
    Journal of Biomedical Semantics, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13326-020-00222-0
    By:
    • Duncan, William D.;
    • Thyvalikakath, Thankam;
    • Haendel, Melissa;
    • Torniai, Carlo;
    • Hernandez, Pedro;
    • Song, Mei;
    • Acharya, Amit;
    • Caplan, Daniel J.;
    • Schleyer, Titus;
    • Ruttenberg, Alan
    Publication type:
    Article

  • An ontology for representing hematologic malignancies: the cancer cell ontology.

    Published in:
    BMC Bioinformatics, 2019, v. 20, n. 1, p. 231, doi. 10.1186/s12859-019-2722-8
    By:
    • Serra, Lucas M.;
    • Duncan, William D.;
    • Diehl, Alexander D.
    Publication type:
    Article

  • OSCI: standardized stem cell ontology representation and use cases for stem cell investigation.

    Published in:
    BMC Bioinformatics, 2019, v. 20, n. 1, p. 237, doi. 10.1186/s12859-019-2723-7
    By:
    • He, Yongqun;
    • Duncan, William D.;
    • Cooper, Daniel J.;
    • Hansen, Jens;
    • Iyengar, Ravi;
    • Ong, Edison;
    • Walker, Kendal;
    • Tibi, Omar;
    • Smith, Sam;
    • Serra, Lucas M.;
    • Zheng, Jie;
    • Sarntivijai, Sirarat;
    • Schürer, Stephan;
    • O'Shea, K. Sue;
    • Diehl, Alexander D.
    Publication type:
    Article

  • Prognostic impact of adjuvant chemotherapy treatment intensity for ovarian cancer.

    Published in:
    PLoS ONE, 2018, v. 13, n. 11, p. 1, doi. 10.1371/journal.pone.0206913
    By:
    • Starbuck, Kristen D.;
    • Szender, J. Brian;
    • Duncan, William D.;
    • Morrell, Kayla;
    • Etter, John Lewis;
    • Zsiros, Emese;
    • Odunsi, Kunle;
    • Moysich, Kirsten;
    • Eng, Kevin H.
    Publication type:
    Article

  • Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.

    Published in:
    Nucleic Acids Research, 2017, v. 45, n. D1, p. D339, doi. 10.1093/nar/gkw1075
    By:
    • Natale, Darren A.;
    • Arighi, Cecilia N.;
    • Blake, Judith A.;
    • Bona, Jonathan;
    • Chuming Chen;
    • Sheng-Chih Chen;
    • Christie, Karen R.;
    • Cowart, Julie;
    • D’Eustachio, Peter;
    • Diehl, Alexander D.;
    • Drabkin, Harold J.;
    • Duncan, William D.;
    • Huang, Hongzhan;
    • Ren, Jia;
    • Ross, Karen;
    • Ruttenberg, Alan;
    • Shamovsky, Veronica;
    • Smith, Barry;
    • Qinghua Wang;
    • Jian Zhang
    Publication type:
    Article