Works by Dudchenko, Olga

Results: 29
    1

    Chromatin alternates between A and B compartments at kilobase scale for subgenic organization.

    Published in:
    Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38429-1
    By:
    • Harris, Hannah L.;
    • Gu, Huiya;
    • Olshansky, Moshe;
    • Wang, Ailun;
    • Farabella, Irene;
    • Eliaz, Yossi;
    • Kalluchi, Achyuth;
    • Krishna, Akshay;
    • Jacobs, Mozes;
    • Cauer, Gesine;
    • Pham, Melanie;
    • Rao, Suhas S. P.;
    • Dudchenko, Olga;
    • Omer, Arina;
    • Mohajeri, Kiana;
    • Kim, Sungjae;
    • Nichols, Michael H.;
    • Davis, Eric S.;
    • Gkountaroulis, Dimos;
    • Udupa, Devika
    Publication type:
    Article
    2
    3

    Chromosome-level genome of Schistosoma haematobium underpins genome-wide explorations of molecular variation.

    Published in:
    PLoS Pathogens, 2022, v. 18, n. 2, p. 1, doi. 10.1371/journal.ppat.1010288
    By:
    • Stroehlein, Andreas J.;
    • Korhonen, Pasi K.;
    • Lee, V. Vern;
    • Ralph, Stuart A.;
    • Mentink-Kane, Margaret;
    • You, Hong;
    • McManus, Donald P.;
    • Tchuenté, Louis-Albert Tchuem;
    • Stothard, J. Russell;
    • Kaur, Parwinder;
    • Dudchenko, Olga;
    • Aiden, Erez Lieberman;
    • Yang, Bicheng;
    • Yang, Huanming;
    • Emery, Aidan M.;
    • Webster, Bonnie L.;
    • Brindley, Paul J.;
    • Rollinson, David;
    • Chang, Bill C. H.;
    • Gasser, Robin B.
    Publication type:
    Article
    4
    5

    A Chromosome-length Assembly of the Black Petaltail (Tanypteryx hageni) Dragonfly.

    Published in:
    Genome Biology & Evolution, 2023, v. 15, n. 3, p. 1, doi. 10.1093/gbe/evad024
    By:
    • Tolman, Ethan R;
    • Beatty, Christopher D;
    • Bush, Jonas;
    • Kohli, Manpreet;
    • Moreno, Carlos M;
    • Ware, Jessica L;
    • Weber, K Scott;
    • Khan, Ruqayya;
    • Maheshwari, Chirag;
    • Weisz, David;
    • Dudchenko, Olga;
    • Aiden, Erez Lieberman;
    • Frandsen, Paul B
    Publication type:
    Article
    6

    Chromosome-Length Reference Genome for the Endangered Pacific Pocket Mouse Reveals Recent Inbreeding in a Historically Large Population.

    Published in:
    Genome Biology & Evolution, 2022, v. 14, n. 8, p. 1, doi. 10.1093/gbe/evac122
    By:
    • Wilder, Aryn P;
    • Dudchenko, Olga;
    • Curry, Caitlin;
    • Korody, Marisa;
    • Turbek, Sheela P;
    • Daly, Mark;
    • Misuraca, Ann;
    • Wang, Gaojianyong;
    • Khan, Ruqayya;
    • Weisz, David;
    • Fronczek, Julie;
    • Aiden, Erez Lieberman;
    • Houck, Marlys L;
    • Shier, Debra M;
    • Ryder, Oliver A;
    • Steiner, Cynthia C
    Publication type:
    Article
    7

    Improved high quality sand fly assemblies enabled by ultra low input long read sequencing.

    Published in:
    Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03628-y
    By:
    • Huang, Michelle;
    • Kingan, Sarah;
    • Shoue, Douglas;
    • Nguyen, Oanh;
    • Froenicke, Lutz;
    • Galvin, Brendan;
    • Lambert, Christine;
    • Khan, Ruqayya;
    • Maheshwari, Chirag;
    • Weisz, David;
    • Maslen, Gareth;
    • Davison, Helen;
    • Aiden, Erez Lieberman;
    • Korlach, Jonas;
    • Dudchenko, Olga;
    • McDowell, Mary Ann;
    • Richards, Stephen
    Publication type:
    Article
    8
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    10

    Otolith and Genomic Data Reveal Temporal Insights Into Stocking Across a Large River Basin in a Mobile, Long‐Lived Australian Freshwater Fish Species.

    Published in:
    Molecular Ecology, 2025, v. 34, n. 7, p. 1, doi. 10.1111/mec.17714
    By:
    • Harrisson, Katherine A.;
    • Beheregaray, Luciano B.;
    • Bice, Christopher M.;
    • Booth, Emily J.;
    • Brauer, Chris J.;
    • Butler, Gavin L.;
    • Dawson, David;
    • Dudchenko, Olga;
    • Fanson, Benjamin G.;
    • Hackett, Graeme;
    • Harris, Annique;
    • Jones, Matthew J.;
    • Kaur, Parwinder;
    • Koster, Wayne M.;
    • Krusic‐Golub, Kyne;
    • Aiden, Erez Lieberman;
    • Lieschke, Jason A.;
    • Lyon, Jarod;
    • Morrongiello, John R.;
    • Murphy, Nicholas P.
    Publication type:
    Article
    11

    The Sensory Shark: High-quality Morphological, Genomic and Transcriptomic Data for the Small-spotted Catshark Scyliorhinus Canicula Reveal the Molecular Bases of Sensory Organ Evolution in Jawed Vertebrates.

    Published in:
    Molecular Biology & Evolution, 2024, v. 41, n. 12, p. 1, doi. 10.1093/molbev/msae246
    By:
    • Mayeur, Hélène;
    • Leyhr, Jake;
    • Mulley, John;
    • Leurs, Nicolas;
    • Michel, Léo;
    • Sharma, Kanika;
    • Lagadec, Ronan;
    • Aury, Jean-Marc;
    • Osborne, Owen G;
    • Mulhair, Peter;
    • Poulain, Julie;
    • Mangenot, Sophie;
    • Mead, Daniel;
    • Smith, Michelle;
    • Corton, Craig;
    • Oliver, Karen;
    • Skelton, Jason;
    • Betteridge, Emma;
    • Dolucan, Jale;
    • Dudchenko, Olga
    Publication type:
    Article
    12
    13

    Chromosomal‐level genome assembly of the scimitar‐horned oryx: Insights into diversity and demography of a species extinct in the wild.

    Published in:
    Molecular Ecology Resources, 2020, v. 20, n. 6, p. 1668, doi. 10.1111/1755-0998.13181
    By:
    • Humble, Emily;
    • Dobrynin, Pavel;
    • Senn, Helen;
    • Chuven, Justin;
    • Scott, Alan F.;
    • Mohr, David W.;
    • Dudchenko, Olga;
    • Omer, Arina D.;
    • Colaric, Zane;
    • Lieberman Aiden, Erez;
    • Al Dhaheri, Shaikha Salem;
    • Wildt, David;
    • Oliaji, Shireen;
    • Tamazian, Gaik;
    • Pukazhenthi, Budhan;
    • Ogden, Rob;
    • Koepfli, Klaus‐Peter
    Publication type:
    Article
    14
    15

    A chromosome-length genome assembly and annotation of blackberry (Rubus argutus, cv. "Hillquist").

    Published in:
    G3: Genes | Genomes | Genetics, 2023, v. 13, n. 2, p. 1, doi. 10.1093/g3journal/jkac289
    By:
    • Brůna, Tomáš;
    • Aryal, Rishi;
    • Dudchenko, Olga;
    • Sargent, Daniel James;
    • Mead, Daniel;
    • Buti, Matteo;
    • Cavallini, Andrea;
    • Hytönen, Timo;
    • Andrés, Javier;
    • Pham, Melanie;
    • Weisz, David;
    • Mascagni, Flavia;
    • Usai, Gabriele;
    • Natali, Lucia;
    • Bassil, Nahla;
    • Fernandez, Gina E.;
    • Lomsadze, Alexandre;
    • Armour, Mitchell;
    • Olukolu, Bode;
    • Poorten, Thomas
    Publication type:
    Article
    16
    17

    Delineating the Tnt1 Insertion Landscape of the Model Legume Medicago truncatula cv. R108 at the Hi-C Resolution Using a Chromosome-Length Genome Assembly.

    Published in:
    International Journal of Molecular Sciences, 2021, v. 22, n. 9, p. 4326, doi. 10.3390/ijms22094326
    By:
    • Kaur, Parwinder;
    • Lui, Christopher;
    • Dudchenko, Olga;
    • Nandety, Raja Sekhar;
    • Hurgobin, Bhavna;
    • Pham, Melanie;
    • Lieberman Aiden, Erez;
    • Wen, Jiangqi;
    • Mysore, Kirankumar S;
    • Maghuly, Fatemeh;
    • Sehr, Eva M.;
    • Saxena, Rachit;
    • Konkin, David J.
    Publication type:
    Article
    18

    Chromosome-length genome assembly and karyotype of the endangered black-footed ferret (Mustela nigripes).

    Published in:
    Journal of Heredity, 2023, v. 114, n. 5, p. 539, doi. 10.1093/jhered/esad035
    By:
    • Kliver, Sergei;
    • Houck, Marlys L;
    • Perelman, Polina L;
    • Totikov, Azamat;
    • Tomarovsky, Andrey;
    • Dudchenko, Olga;
    • Omer, Arina D;
    • Colaric, Zane;
    • Weisz, David;
    • Aiden, Erez Lieberman;
    • Chan, Saki;
    • Hastie, Alex;
    • Komissarov, Aleksey;
    • Ryder, Oliver A;
    • Graphodatsky, Alexander;
    • Johnson, Warren E;
    • Maldonado, Jesús E;
    • Pukazhenthi, Budhan S;
    • Marinari, Paul E;
    • Wildt, David E
    Publication type:
    Article
    19
    20

    Genomic signatures of barley breeding for environmental adaptation to the new continents.

    Published in:
    Plant Biotechnology Journal, 2023, v. 21, n. 9, p. 1719, doi. 10.1111/pbi.14077
    By:
    • Hu, Haifei;
    • Wang, Penghao;
    • Angessa, Tefera Tolera;
    • Zhang, Xiao‐Qi;
    • Chalmers, Kenneth J.;
    • Zhou, Gaofeng;
    • Hill, Camilla Beate;
    • Jia, Yong;
    • Simpson, Craig;
    • Fuller, John;
    • Saxena, Alka;
    • Al Shamaileh, Hadi;
    • Iqbal, Munir;
    • Chapman, Brett;
    • Kaur, Parwinder;
    • Dudchenko, Olga;
    • Aiden, Erez Lieberman;
    • Keeble‐Gagnere, Gabriel;
    • Westcott, Sharon;
    • Leah, David
    Publication type:
    Article
    21
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    23

    The gene-rich genome of the scallop Pecten maximus.

    Published in:
    GigaScience, 2020, v. 9, n. 5, p. N.PAG, doi. 10.1093/gigascience/giaa037
    By:
    • Kenny, Nathan J;
    • McCarthy, Shane A;
    • Dudchenko, Olga;
    • James, Katherine;
    • Betteridge, Emma;
    • Corton, Craig;
    • Dolucan, Jale;
    • Mead, Dan;
    • Oliver, Karen;
    • Omer, Arina D;
    • Pelan, Sarah;
    • Ryan, Yan;
    • Sims, Ying;
    • Skelton, Jason;
    • Smith, Michelle;
    • Torrance, James;
    • Weisz, David;
    • Wipat, Anil;
    • Aiden, Erez L;
    • Howe, Kerstin
    Publication type:
    Article
    24

    Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C.

    Published in:
    GigaScience, 2020, v. 9, n. 4, p. N.PAG, doi. 10.1093/gigascience/giaa027
    By:
    • Field, Matt A;
    • Rosen, Benjamin D;
    • Dudchenko, Olga;
    • Chan, Eva K F;
    • Minoche, Andre E;
    • Edwards, Richard J;
    • Barton, Kirston;
    • Lyons, Ruth J;
    • Tuipulotu, Daniel Enosi;
    • Hayes, Vanessa M;
    • D. Omer, Arina;
    • Colaric, Zane;
    • Keilwagen, Jens;
    • Skvortsova, Ksenia;
    • Bogdanovic, Ozren;
    • Smith, Martin A;
    • Aiden, Erez Lieberman;
    • Smith, Timothy P L;
    • Zammit, Robert A;
    • Ballard, J William O
    Publication type:
    Article
    25
    26

    Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus).

    Published in:
    BMC Biology, 2017, v. 15, p. 1, doi. 10.1186/s12915-017-0439-6
    By:
    • Larsen, Peter A.;
    • Harris, R. Alan;
    • Yue Liu;
    • Murali, Shwetha C.;
    • Campbell, C. Ryan;
    • Brown, Adam D.;
    • Sullivan, Beth A.;
    • Shelton, Jennifer;
    • Brown, Susan J.;
    • Raveendran, Muthuswamy;
    • Dudchenko, Olga;
    • Machol, Ido;
    • Durand, Neva C.;
    • Shamim, Muhammad S.;
    • Aiden, Erez Lieberman;
    • Muzny, Donna M.;
    • Gibbs, Richard A.;
    • Yoder, Anne D.;
    • Rogers, Jeffrey;
    • Worley, Kim C.
    Publication type:
    Article
    27
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    Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome.

    Published in:
    BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-07493-6
    By:
    • Edwards, Richard J.;
    • Field, Matt A.;
    • Ferguson, James M.;
    • Dudchenko, Olga;
    • Keilwagen, Jens;
    • Rosen, Benjamin D.;
    • Johnson, Gary S.;
    • Rice, Edward S.;
    • Hillier, La Deanna;
    • Hammond, Jillian M.;
    • Towarnicki, Samuel G.;
    • Omer, Arina;
    • Khan, Ruqayya;
    • Skvortsova, Ksenia;
    • Bogdanovic, Ozren;
    • Zammit, Robert A.;
    • Aiden, Erez Lieberman;
    • Warren, Wesley C.;
    • Ballard, J. William O.
    Publication type:
    Article