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ClockstaRX: Testing Molecular Clock Hypotheses With Genomic Data.
- Published in:
- Genome Biology & Evolution, 2024, v. 16, n. 4, p. 1, doi. 10.1093/gbe/evae064
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- Publication type:
- Article
Detecting Episodic Evolution through Bayesian Inference of Molecular Clock Models.
- Published in:
- Molecular Biology & Evolution, 2023, v. 40, n. 10, p. 1, doi. 10.1093/molbev/msad212
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- Publication type:
- Article
Decoding the Fundamental Drivers of Phylodynamic Inference.
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- Molecular Biology & Evolution, 2023, v. 40, n. 6, p. 1, doi. 10.1093/molbev/msad132
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- Publication type:
- Article
Evolutionary rate of SARS-CoV-2 increases during zoonotic infection of farmed mink.
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- Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead002
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- Publication type:
- Article
Phytest: quality control for phylogenetic analyses.
- Published in:
- Bioinformatics, 2022, v. 38, n. 22, p. 5124, doi. 10.1093/bioinformatics/btac664
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- Publication type:
- Article
New rules for genomics-informed COVID-19 responses–Lessons learned from the first waves of the Omicron variant in Australia.
- Published in:
- PLoS Genetics, 2022, v. 18, n. 10, p. 1, doi. 10.1371/journal.pgen.1010415
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- Publication type:
- Article
Lymphocytic Choriomeningitis Virus Infection, Australia.
- Published in:
- 2022
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- Publication type:
- journal article
Niche-specific genome degradation and convergent evolution shaping Staphylococcus aureus adaptation during severe infections.
- Published in:
- eLife, 2022, p. 1, doi. 10.7554/eLife.77195
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- Publication type:
- Article
A 16<sup>th</sup> century Escherichia coli draft genome associated with an opportunistic bile infection.
- Published in:
- Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03527-1
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- Publication type:
- Article
Real-Time and Remote MCMC Trace Inspection with Beastiary.
- Published in:
- Molecular Biology & Evolution, 2022, v. 39, n. 5, p. 1, doi. 10.1093/molbev/msac095
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- Publication type:
- Article
The International Virus Bioinformatics Meeting 2022.
- Published in:
- Viruses (1999-4915), 2022, v. 14, n. 5, p. 973, doi. 10.3390/v14050973
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- Publication type:
- Article
Phylodynamic Inference of Bacterial Outbreak Parameters Using Nanopore Sequencing.
- Published in:
- Molecular Biology & Evolution, 2022, v. 39, n. 3, p. 1, doi. 10.1093/molbev/msac040
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- Publication type:
- Article
Assessment of Coronavirus Disease 2019 Intervention Strategies in the Nordic Countries Using Genomic Epidemiology.
- Published in:
- Open Forum Infectious Diseases, 2022, v. 9, n. 3, p. 1, doi. 10.1093/ofid/ofab665
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- Publication type:
- Article
Emergence of SARS-CoV-2 Variants of Concern Is Driven by Acceleration of the Substitution Rate.
- Published in:
- Molecular Biology & Evolution, 2022, v. 39, n. 2, p. 1, doi. 10.1093/molbev/msac013
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- Publication type:
- Article
Tightly Constrained Genome Reduction and Relaxation of Purifying Selection during Secondary Plastid Endosymbiosis.
- Published in:
- Molecular Biology & Evolution, 2022, v. 39, n. 1, p. 1, doi. 10.1093/molbev/msab295
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- Publication type:
- Article
Epidemiological inference from pathogen genomes: A review of phylodynamic models and applications.
- Published in:
- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac045
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- Publication type:
- Article
Genomic characterisation reveals a dominant lineage of SARS-CoV-2 in Papua New Guinea.
- Published in:
- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac033
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- Publication type:
- Article
The impact of public health interventions in the Nordic countries during the first year of SARS-CoV-2 transmission and evolution.
- Published in:
- Eurosurveillance (15607917), 2021, v. 26, n. 44, p. 30, doi. 10.2807/1560-7917.ES.2021.26.44.2001996
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- Publication type:
- Article
Multiple introductions of multidrug-resistant typhoid associated with acute infection and asymptomatic carriage, Kenya.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.67852
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- Publication type:
- Article
Evolutionary dynamics of multidrug resistant Salmonella enterica serovar 4,[5],12:i:- in Australia.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25073-w
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- Publication type:
- Article
Infectious disease phylodynamics with occurrence data.
- Published in:
- Methods in Ecology & Evolution, 2021, v. 12, n. 8, p. 1498, doi. 10.1111/2041-210X.13620
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- Publication type:
- Article
Characterizing and Evaluating the Zoonotic Potential of Novel Viruses Discovered in Vampire Bats.
- Published in:
- Viruses (1999-4915), 2021, v. 13, n. 2, p. 252, doi. 10.3390/v13020252
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- Publication type:
- Article
The Impacts of Low Diversity Sequence Data on Phylodynamic Inference during an Emerging Epidemic.
- Published in:
- Viruses (1999-4915), 2021, v. 13, n. 1, p. 79, doi. 10.3390/v13010079
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- Publication type:
- Article
Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-20235-8
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- Publication type:
- Article
Genomic Epidemiology of the First Wave of SARS-CoV-2 in Italy.
- Published in:
- Viruses (1999-4915), 2020, v. 12, n. 12, p. 1438, doi. 10.3390/v12121438
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- Publication type:
- Article
Tracking the COVID-19 pandemic in Australia using genomics.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18314-x
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- Publication type:
- Article
Temporal signal and the phylodynamic threshold of SARS-CoV-2.
- Published in:
- Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa061
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- Publication type:
- Article
Linking Branch Lengths across Sets of Loci Provides the Highest Statistical Support for Phylogenetic Inference.
- Published in:
- Molecular Biology & Evolution, 2020, v. 37, n. 4, p. 1202, doi. 10.1093/molbev/msz291
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- Publication type:
- Article
The molecular clock of Mycobacterium tuberculosis.
- Published in:
- PLoS Pathogens, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.ppat.1008067
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- Publication type:
- Article
Tracing Ancient Human Migrations into Sahul Using Hepatitis B Virus Genomes.
- Published in:
- Molecular Biology & Evolution, 2019, v. 36, n. 5, p. 942, doi. 10.1093/molbev/msz021
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- Publication type:
- Article
Limited Sustained Local Transmission of HIV-1 CRF01_AE in New South Wales, Australia.
- Published in:
- Viruses (1999-4915), 2019, v. 11, n. 5, p. 482, doi. 10.3390/v11050482
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- Publication type:
- Article
Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae.
- Published in:
- PLoS Genetics, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pgen.1008114
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- Publication type:
- Article
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis.
- Published in:
- PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006650
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- Publication type:
- Article
Phylodynamic Model Adequacy Using Posterior Predictive Simulations.
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- Systematic Biology, 2019, v. 68, n. 2, p. 358, doi. 10.1093/sysbio/syy048
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- Publication type:
- Article
The Asian Lineage of Zika Virus: Transmission and Evolution in Asia and the Americas.
- Published in:
- Virologica Sinica (16740769), 2019, v. 34, n. 1, p. 1, doi. 10.1007/s12250-018-0078-2
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- Publication type:
- Article
Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination.
- Published in:
- Nature Communications, 2018, v. 9, p. 1, doi. 10.1038/s41467-018-05114-7
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- Publication type:
- Article
PhyloMAd: efficient assessment of phylogenomic model adequacy.
- Published in:
- Bioinformatics, 2018, v. 34, n. 13, p. 2300, doi. 10.1093/bioinformatics/bty103
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- Publication type:
- Article
Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods.
- Published in:
- BMC Evolutionary Biology, 2018, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12862-018-1210-5
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- Publication type:
- Article
Differences in Performance among Test Statistics for Assessing Phylogenomic Model Adequacy.
- Published in:
- Genome Biology & Evolution, 2018, v. 10, n. 6, p. 1375, doi. 10.1093/gbe/evy094
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- Publication type:
- Article
A comparison of methods for estimating substitution rates from ancient DNA sequence data.
- Published in:
- BMC Evolutionary Biology, 2018, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12862-018-1192-3
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- Publication type:
- Article
Bayesian molecular dating: opening up the black box.
- Published in:
- Biological Reviews, 2018, v. 93, n. 2, p. 1165, doi. 10.1111/brv.12390
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- Publication type:
- Article
Analysis of Phylogenomic Tree Space Resolves Relationships Among Marsupial Families.
- Published in:
- Systematic Biology, 2018, v. 67, n. 3, p. 400, doi. 10.1093/sysbio/syx076
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- Publication type:
- Article
Laboratory and molecular surveillance of paediatric typhoidal Salmonella in Nepal: Antimicrobial resistance and implications for vaccine policy.
- Published in:
- PLoS Neglected Tropical Diseases, 2018, v. 12, n. 3, p. 1, doi. 10.1371/journal.pntd.0006408
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- Article
Correction: The paradox of HBV evolution as revealed from a 16<sup>th</sup> century mummy.
- Published in:
- 2018
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- Publication type:
- Correction Notice
Correction: Continental synchronicity of human influenza virus epidemics despite climactic variation.
- Published in:
- 2018
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- Publication type:
- Correction Notice
Continental synchronicity of human influenza virus epidemics despite climactic variation.
- Published in:
- PLoS Pathogens, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.ppat.1006780
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- Publication type:
- Article
The paradox of HBV evolution as revealed from a 16<sup>th</sup> century mummy.
- Published in:
- PLoS Pathogens, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.ppat.1006750
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- Publication type:
- Article
New Statistical Criteria Detect Phylogenetic Bias Caused by Compositional Heterogeneity.
- Published in:
- Molecular Biology & Evolution, 2017, v. 34, n. 6, p. 1529, doi. 10.1093/molbev/msx092
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- Publication type:
- Article
Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families.
- Published in:
- PLoS Pathogens, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.ppat.1006215
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- Publication type:
- Article
Large-Scale Phylogenomic Analysis Reveals the Complex Evolutionary History of Rabies Virus in Multiple Carnivore Hosts.
- Published in:
- PLoS Pathogens, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.ppat.1006041
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- Publication type:
- Article