Works by Dubey, Vikash Kumar

Results: 53

Potential alternatives to current cholinesterase inhibitors: an in silico drug repurposing approach.

Published in:

Drug Development & Industrial Pharmacy, 2021, v. 47, n. 6, p. 919, doi. 10.1080/03639045.2021.1952216

By:

Kundu, Debanjan;
Dubey, Vikash Kumar

Publication type:

Article

Molecular docking and structure-based virtual screening studies of potential drug target, CAAX prenyl proteases, of Leishmania donovani.

Published in:

Journal of Biomolecular Structure & Dynamics, 2016, v. 34, n. 11, p. 2367, doi. 10.1080/07391102.2015.1116411

By:

Singh, Shalini;
Vijaya Prabhu, Sitrarasu;
Suryanarayanan, Venkatesan;
Bhardwaj, Ruchika;
Singh, Sanjeev Kumar;
Dubey, Vikash Kumar

Publication type:

Article

Mechanistic insights into the dual inhibition strategy for checking Leishmaniasis.

Published in:

Journal of Biomolecular Structure & Dynamics, 2012, v. 30, n. 4, p. 474, doi. 10.1080/07391102.2012.682212

By:

Grover, Abhinav;
Katiyar, Shashank Prakash;
Jeyakanthan, Jeyaraman;
Dubey, Vikash Kumar;
Sundar, Durai

Publication type:

Article

Evaluation of selected antitumor agents as subversive substrate and potential inhibitor of trypanothione reductase: an alternative approach for chemotherapy of Leishmaniasis.

Published in:

Molecular & Cellular Biochemistry, 2011, v. 352, n. 1/2, p. 261, doi. 10.1007/s11010-011-0762-0

By:

Shukla, Anil Kumar;
Patra, Sanjukta;
Dubey, Vikash Kumar

Publication type:

Article

Synthesis and characterization of zinc derivatized 3, 5-dihydroxy 4′, 7-dimethoxyflavone and its anti leishmaniasis activity against Leishmania donovani.

Published in:

BioMetals, 2022, v. 35, n. 2, p. 285, doi. 10.1007/s10534-022-00364-x

By:

Gupta, Manish Kumar;
Chiranjivi, Adarsh Kumar;
Dutta, Tanmay;
Dubey, Vikash Kumar;
Rangan, Latha

Publication type:

Article

Ligand conjugated lipid‐based nanocarriers for cancer theranostics.

Published in:

Biotechnology & Bioengineering, 2022, v. 119, n. 11, p. 3022, doi. 10.1002/bit.28205

By:

Kumar, Rahul;
Dkhar, Daphika S.;
Kumari, Rohini;
Divya;
Mahapatra, Supratim;
Srivastava, Ananya;
Dubey, Vikash Kumar;
Chandra, Pranjal

Publication type:

Article

In silico characterization of thermostable lipases.

Published in:

Extremophiles, 2011, v. 15, n. 1, p. 89, doi. 10.1007/s00792-010-0337-0

By:

Chakravorty, Debamitra;
Parameswaran, Saravanan;
Dubey, Vikash Kumar;
Patra, Sanjukta

Publication type:

Article

Drug Encapsulated Lipid-Polymeric Nanohybrid as a Chemo-therapeutic Platform of Cancer.

Published in:

Nanotheranostics, 2023, v. 7, n. 2, p. 167, doi. 10.7150/ntno.81173

By:

Kumar, Rahul;
Srivastava, Vinish Ranjan;
Mahapatra, Supratim;
Dkhar, Daphika S.;
Kumari, Rohini;
Darshna;
Prerna, Kumari;
Dubey, Vikash Kumar;
Chandra, Pranjal

Publication type:

Article

Exploring critical determinants of protein amyloidogenesis: a review.

Published in:

Journal of Peptide Science, 2013, v. 19, n. 9, p. 529, doi. 10.1002/psc.2539

By:

Sarkar, Nandini;
Dubey, Vikash Kumar

Publication type:

Article

Identification of novel anti‐leishmanials targeting glutathione synthetase of the parasite: a drug repurposing approach.

Published in:

FEBS Letters, 2025, v. 599, n. 3, p. 367, doi. 10.1002/1873-3468.15016

By:

Sarma, Manash;
Bora, Kushal;
Ranjan, Preeti;
Dubey, Vikash Kumar

Publication type:

Article

Emulating structural stability of <bold>Pseudomonas mendocina</bold> lipase: <bold>in silico</bold> mutagenesis and molecular dynamics studies.

Published in:

Journal of Molecular Modeling, 2014, v. 20, n. 11, p. 1, doi. 10.1007/s00894-014-2501-4

By:

Saravanan, Parameswaran;
Dubey, Vikash Kumar;
Patra, Sanjukta

Publication type:

Article

Conversion of type I 4:6 to 3:5 β-turn types in human acidic fibroblast growth factor: Effects upon structure, stability, folding, and mitogenic function.

Published in:

Proteins, 2006, v. 62, n. 3, p. 686, doi. 10.1002/prot.20808

By:

Lee, Jihun;
Dubey, Vikash Kumar;
Somasundaram, Thayumanasamy;
Blaber, Michael

Publication type:

Article

Cloning, expression, characterization and inhibition studies on trypanothione synthetase, a drug target enzyme, from Leishmania donovani.

Published in:

Biological Chemistry, 2011, v. 392, n. 12, p. 1113, doi. 10.1515/BC.2011.222

By:

Saudagar, Prakash;
Dubey, Vikash Kumar

Publication type:

Article

Effect of curcumin on amyloidogenic property of molten globule-like intermediate state of 2,5-diketo--gluconate reductase A.

Published in:

Biological Chemistry, 2009, v. 390, n. 10, p. 1057, doi. 10.1515/BC.2009.107

By:

Sarkar, Nandini;
Singh, Abhay Narain;
Dubey, Vikash Kumar

Publication type:

Article

Structure-guided approach to identify a novel class of anti-leishmaniasis diaryl sulfide compounds targeting the trypanothione metabolism.

Published in:

Amino Acids, 2020, v. 52, n. 2, p. 247, doi. 10.1007/s00726-019-02731-4

By:

Colotti, Gianni;
Saccoliti, Francesco;
Gramiccia, Marina;
Di Muccio, Trentina;
Prakash, Jay;
Yadav, Sunita;
Dubey, Vikash Kumar;
Vistoli, Giulio;
Battista, Theo;
Mocci, Stefano;
Fiorillo, Annarita;
Bibi, Aasia;
Madia, Valentina Noemi;
Messore, Antonella;
Costi, Roberta;
Di Santo, Roberto;
Ilari, Andrea

Publication type:

Article

Design of a multi-epitope subunit vaccine for immune-protection against Leishmania parasite.

Published in:

Pathogens & Global Health, 2020, v. 114, n. 8, p. 471, doi. 10.1080/20477724.2020.1842976

By:

Yadav, Sunita;
Prakash, Jay;
Shukla, Harish;
Das, Kanhu Charan;
Tripathi, Timir;
Dubey, Vikash Kumar

Publication type:

Article

Quantitative Proteome Analysis of Leishmania donovani under Spermidine Starvation.

Published in:

PLoS ONE, 2016, v. 11, n. 4, p. 1, doi. 10.1371/journal.pone.0154262

By:

Singh, Shalini;
Dubey, Vikash Kumar

Publication type:

Article

Redesigning symmetry-related 'mini-core' regions of FGF-1 to increase primary structure symmetry: Thermodynamic and functional consequences of structural symmetry.

Published in:

Protein Science: A Publication of the Protein Society, 2005, v. 14, n. 9, p. 2315, doi. 10.1110/ps.051494405

By:

Dubey, Vikash Kumar;
Lee, Jihun;
Blaber, Michael

Publication type:

Article

Molecular Mechanisms of Cell Death in Leishmania donovani Induced by Selected Steroidal Alkaloids.

Published in:

Journal of Basic Microbiology, 2025, v. 65, n. 3, p. 1, doi. 10.1002/jobm.202400655

By:

Menpadi, Naveena;
Chandra, Pranjal;
Dubey, Vikash Kumar

Publication type:

Article

Biochemical characterization and chemical validation of Leishmania MAP Kinase-3 as a potential drug target.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-52774-6

By:

Raj, Shweta;
Saha, Gundappa;
Sasidharan, Santanu;
Dubey, Vikash Kumar;
Saudagar, Prakash

Publication type:

Article

BLIMP-1 Mediated Downregulation of TAK1 and p53 Molecules Is Crucial in the Pathogenesis of Kala-Azar.

Published in:

Frontiers in Cellular & Infection Microbiology, 2020, v. 10, p. N.PAG, doi. 10.3389/fcimb.2020.594431

By:

Saha, Gundappa;
Chiranjivi, Adarsh Kumar;
Khamar, Bakulesh M.;
Prerna, Kumari;
Kumar, Manish;
Dubey, Vikash Kumar

Publication type:

Article

Advances in protein misfolding, amyloidosis and its correlation with human diseases.

Published in:

3 Biotech, 2020, v. 10, n. 5, p. 1, doi. 10.1007/s13205-020-2166-x

By:

Kundu, Debanjan;
Prerna, Kumari;
Chaurasia, Rahul;
Bharty, Manoj Kumar;
Dubey, Vikash Kumar

Publication type:

Article

Fresh insights into the pyrimidine metabolism in the trypanosomatids.

Published in:

Parasites & Vectors, 2018, v. 11, p. 1, doi. 10.1186/s13071-018-2660-8

By:

Tiwari, Kartikeya;
Dubey, Vikash Kumar

Publication type:

Article

Molecular docking studies of selected tricyclic and quinone derivatives on trypanothione reductase of Leishmania infantum.

Published in:

Journal of Computational Chemistry, 2010, v. 31, n. 13, p. 2463, doi. 10.1002/jcc.21538

By:

VENKATESAN, SANTHOSH KANNAN;
SHUKLA, ANIL KUMAR;
DUBEY, VIKASH KUMAR

Publication type:

Article

Blocking Protein kinase C signaling pathway: mechanistic insights into the anti-leishmanial activity of prospective herbal drugs from Withania somnifera.

Published in:

BMC Genomics, 2012, v. 13, n. Suppl 7, p. 1, doi. 10.1186/1471-2164-13-S7-S20

By:

Grover, Abhinav;
Katiyar, Shashank Prakash;
Jeyakanthan, Jeyaraman;
Dubey, Vikash Kumar;
Sundar, Durai

Publication type:

Article

Footprinting of inhibitor interactions of in silico identified inhibitors of trypanothione reductase of Leishmania parasite.

Published in:

2012

By:

Venkatesan, Santhosh K;
Dubey, Vikash Kumar

Publication type:

journal article

Footprinting of Inhibitor Interactions of In Silico Identified Inhibitors of Trypanothione Reductase of Leishmania Parasite.

Published in:

Scientific World Journal, 2012, p. 1, doi. 10.1100/2012/963658

By:

Venkatesan, Santhosh K.;
Dubey, Vikash Kumar

Publication type:

Article

Novel chemical scaffold as potential drug against Leishmania donovani: Integrated computational and experimental approaches.

Published in:

Journal of Cellular Biochemistry, 2023, v. 124, n. 9, p. 1404, doi. 10.1002/jcb.30455

By:

Ranjan, Preeti;
Dubey, Vikash Kumar

Publication type:

Article

Identification of lead molecules against potential drug target protein MAPK4 from L. donovani: An in-silico approach using docking, molecular dynamics and binding free energy calculation.

Published in:

PLoS ONE, 2019, v. 14, n. 8, p. 1, doi. 10.1371/journal.pone.0221331

By:

Raj, Shweta;
Sasidharan, Santanu;
Dubey, Vikash Kumar;
Saudagar, Prakash

Publication type:

Article

Dual-target drugs against Leishmania donovani for potential novel therapeutics.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-45448-x

By:

Bora, Kushal;
Sarma, Manash;
Kanaujia, Shankar Prasad;
Dubey, Vikash Kumar

Publication type:

Article

Genome Analysis of Selected Foodborne Pathogens for Identification of Drug Targets.

Published in:

Current Trends in Biotechnology & Pharmacy, 2011, v. 5, n. 2, p. 1134

By:

Shakyawar, Sushil Kumar;
Goyal, Arun;
Dubey, Vikash Kumar

Publication type:

Article

Subcellular localization studies of LdBPK_070020, a conserved protein of Leishmania donovani.

Published in:

Journal of Vector Borne Diseases, 2016, v. 53, n. 4, p. 375, doi. 10.4103/0972-9062.197273

By:

Bhardwaj, Ruchika;
Singh, Sanjeev Kumar;
Dubey, Vikash Kumar

Publication type:

Article

Molecular Mechanisms of In vitro Betulin-Induced Apoptosis of Leishmania donovani.

Published in:

American Journal of Tropical Medicine & Hygiene, 2014, v. 90, n. 2, p. 354, doi. 10.4269/ajtmh.13-0320

By:

Saudagar, Prakash;
Dubey, Vikash Kumar

Publication type:

Article

Molecular Engineering of Ultrabright Biomimetic NanoGhost for Site‐Selective Tumor Imaging and Biodistribution.

Published in:

Advanced Healthcare Materials, 2025, v. 14, n. 3, p. 1, doi. 10.1002/adhm.202401233

By:

Prasad, Rajendra;
Prerna, Kumari;
Temgire, Mayur;
Banerjee, Pinaki;
Kumari, Rohini;
Kundu, Gopal C;
Hattila, Deeksha;
Mangannavar, Chandrashekhar Venkaraddi;
Meena, Avtar Singh;
Gorain, Mahadeo;
Bellare, Jayesh;
Chandra, Pranjal;
Dubey, Vikash Kumar

Publication type:

Article

Immobilization of Procerain B, a Cysteine Endopeptidase, on Amberlite MB-150 Beads.

Published in:

PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0066000

By:

Singh, Abhay Narayan;
Singh, Sushant;
Dubey, Vikash Kumar

Publication type:

Article

cDNA Cloning and Molecular Modeling of Procerain B, a Novel Cysteine Endopeptidase Isolated from <i>Calotropis procera</i>.

Published in:

PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0059806

By:

Singh, Abhay Narayan;
Yadav, Prity;
Dubey, Vikash Kumar

Publication type:

Article

Biodegradable Polycaprolactone (PCL) Nanosphere Encapsulating Superoxide Dismutase and Catalase Enzymes.

Published in:

Applied Biochemistry & Biotechnology, 2013, v. 171, n. 7, p. 1545, doi. 10.1007/s12010-013-0427-4

By:

Singh, Sushant;
Singh, Abhay Narayan;
Verma, Anil;
Dubey, Vikash Kumar

Publication type:

Article

Unraveling the Rationale Behind Organic Solvent Stability of Lipases.

Published in:

Applied Biochemistry & Biotechnology, 2012, v. 167, n. 3, p. 439, doi. 10.1007/s12010-012-9669-9

By:

Chakravorty, Debamitra;
Parameswaran, Saravanan;
Dubey, Vikash Kumar;
Patra, Sanjukta

Publication type:

Article

Exploring Applications of Procerain B, a Novel Protease from Calotropis procera, and Characterization by N-Terminal Sequencing as well as Peptide Mass Fingerprinting.

Published in:

Applied Biochemistry & Biotechnology, 2011, v. 164, n. 5, p. 573, doi. 10.1007/s12010-011-9158-6

By:

Singh, Abhay Narayan;
Dubey, Vikash Kumar

Publication type:

Article

Repurposing the in-house generated Alzheimer's disease targeting molecules through computational and preliminary in-vitro studies for the management of SARS-coronavirus-2.

Published in:

Molecular Diversity, 2024, v. 28, n. 5, p. 2847, doi. 10.1007/s11030-023-10717-4

By:

Singh, Gourav;
Thomas, Jobin;
Wadhawa, Sahil;
Kashyap, Anurag;
Rahaman, Syed Ajijur;
Borkotoky, Subhomoi;
Datta, Agnisha;
Singh, Gireesh Kumar;
Mishra, Indubhusan;
Rai, Geeta;
Satija, Jitendra;
Dubey, Vikash Kumar;
Modi, Gyan

Publication type:

Article

Molecular docking, binding mode analysis, molecular dynamics, and prediction of ADMET/toxicity properties of selective potential antiviral agents against SARS-CoV-2 main protease: an effort toward drug repurposing to combat COVID-19.

Published in:

Molecular Diversity, 2021, v. 25, n. 3, p. 1905, doi. 10.1007/s11030-021-10188-5

By:

Rai, Himanshu;
Barik, Atanu;
Singh, Yash Pal;
Suresh, Akhil;
Singh, Lovejit;
Singh, Gourav;
Nayak, Usha Yogendra;
Dubey, Vikash Kumar;
Modi, Gyan

Publication type:

Article

Structure-based drug designing against Leishmania donovani using docking and molecular dynamics simulation studies: exploring glutathione synthetase as a drug target.

Published in:

Journal of Biomolecular Structure & Dynamics, 2024, v. 42, n. 14, p. 7628, doi. 10.1080/07391102.2023.2240429

By:

Sarma, Manash;
Borkotoky, Subhomoi;
Dubey, Vikash Kumar

Publication type:

Article

Targeting two potential sites of SARS-CoV-2 main protease through computational drug repurposing.

Published in:

Journal of Biomolecular Structure & Dynamics, 2023, v. 41, n. 7, p. 3014, doi. 10.1080/07391102.2022.2044907

By:

Prakash, Archisha;
Borkotoky, Subhomoi;
Dubey, Vikash Kumar

Publication type:

Article

Repurposing of FDA-approved drugs as autophagy inhibitors in tumor cells.

Published in:

Journal of Biomolecular Structure & Dynamics, 2022, v. 40, n. 13, p. 5815, doi. 10.1080/07391102.2021.1873862

By:

Prerna, Kumari;
Dubey, Vikash Kumar

Publication type:

Article

Virtual screening and repurposing of FDA-approved drugs from ZINC database to identify potential autophagy inhibitors exploiting autophagy related 4A cysteine peptidase as a target: potential as novel anti-cancer molecule.

Published in:

Journal of Biomolecular Structure & Dynamics, 2022, v. 40, n. 12, p. 5266, doi. 10.1080/07391102.2020.1869100

By:

Umesh;
Prerna, Kumari;
Dubey, Vikash Kumar

Publication type:

Article

Bacterial protein azurin and derived peptides as potential anti-SARS-CoV-2 agents: insights from molecular docking and molecular dynamics simulations.

Published in:

Journal of Biomolecular Structure & Dynamics, 2021, v. 39, n. 15, p. 5706, doi. 10.1080/07391102.2020.1787864

By:

Sasidharan, Santanu;
Selvaraj, Chandrabose;
Singh, Sanjeev Kumar;
Dubey, Vikash Kumar;
Kumar, Sachin;
Fialho, Arsenio M.;
Saudagar, Prakash

Publication type:

Article

Identification of new anti-nCoV drug chemical compounds from Indian spices exploiting SARS-CoV-2 main protease as target.

Published in:

Journal of Biomolecular Structure & Dynamics, 2021, v. 39, n. 9, p. 3428, doi. 10.1080/07391102.2020.1763202

By:

Umesh;
Kundu, Debanjan;
Selvaraj, Chandrabose;
Singh, Sanjeev Kumar;
Dubey, Vikash Kumar

Publication type:

Article

Interaction of selected biomolecules and metabolites with amyloidogenic proteins.

Published in:

Journal of Biomolecular Structure & Dynamics, 2021, v. 39, n. 9, p. 3061, doi. 10.1080/07391102.2020.1760138

By:

Kundu, Debanjan;
Umesh;
Dubey, Vikash Kumar

Publication type:

Article

Identification of two natural compound inhibitors of Leishmania donovani Spermidine Synthase (SpdS) through molecular docking and dynamic studies.

Published in:

Journal of Biomolecular Structure & Dynamics, 2018, v. 36, n. 10, p. 2678, doi. 10.1080/07391102.2017.1366947

By:

V. M., Vidhya;
Dubey, Vikash Kumar;
Ponnuraj, Karthe

Publication type:

Article

In Silico Characterization of Thermoactive, Alkaline and Detergent-Stable Lipase from a Staphylococcus Aureus Strain.

Published in:

In Silico Biology, 2010, v. 10, n. 5/6, p. 265, doi. 10.3233/isb-2010-0438

By:

Parameswaran, Saravanan;
Dubey, Vikash Kumar;
Patra, Sanjukta

Publication type:

Article