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Strategies for Effective Use of Genomic Information in Crop Breeding Programs Serving Africa and South Asia.
Published in:
Frontiers in Plant Science, 2020, p. 1, doi. 10.3389/fpls.2020.00353
By:
- Santantonio, Nicholas;
- Atanda, Sikiru Adeniyi;
- Beyene, Yoseph;
- Varshney, Rajeev K.;
- Olsen, Michael;
- Jones, Elizabeth;
- Roorkiwal, Manish;
- Gowda, Manje;
- Bharadwaj, Chellapilla;
- Gaur, Pooran M.;
- Zhang, Xuecai;
- Dreher, Kate;
- Ayala-Hernández, Claudio;
- Crossa, Jose;
- Pérez-Rodríguez, Paulino;
- Rathore, Abhishek;
- Gao, Star Yanxin;
- McCouch, Susan;
- Robbins, Kelly R.
Publication type:
Article
Empirical Comparison of Tropical Maize Hybrids Selected Through Genomic and Phenotypic Selections.
Published in:
Frontiers in Plant Science, 2019, v. 10, p. 1, doi. 10.3389/fpls.2019.01502
By:
- Beyene, Yoseph;
- Gowda, Manje;
- Olsen, Michael;
- Robbins, Kelly R.;
- Pérez-Rodríguez, Paulino;
- Alvarado, Gregorio;
- Dreher, Kate;
- Gao, Star Yanxin;
- Mugo, Stephen;
- Prasanna, Boddupalli M.;
- Crossa, Jose
Publication type:
Article
Acceleration of Aux/IAA proteolysis is specific for auxin and independent of AXR1.
Published in:
Plant Journal, 2003, v. 35, n. 3, p. 285, doi. 10.1046/j.1365-313X.2003.01801.x
By:
- Zenser, Nathan;
- Dreher, Kate A.;
- Edwards, Stephanie R.;
- Callis, Judy
Publication type:
Article
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.
Published in:
Nucleic Acids Research, 2014, v. 42, n. D1, p. D459, doi. 10.1093/nar/gkt1103
By:
- Caspi, Ron;
- Altman, Tomer;
- Billington, Richard;
- Dreher, Kate;
- Foerster, Hartmut;
- Fulcher, Carol A.;
- Holland, Timothy A.;
- Keseler, Ingrid M.;
- Kothari, Anamika;
- Kubo, Aya;
- Krummenacker, Markus;
- Latendresse, Mario;
- Mueller, Lukas A.;
- Ong, Quang;
- Paley, Suzanne;
- Subhraveti, Pallavi;
- Weaver, Daniel S.;
- Weerasinghe, Deepika;
- Zhang, Peifen;
- Karp, Peter D.
Publication type:
Article
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools.
Published in:
Nucleic Acids Research, 2012, p. D1202, doi. 10.1093/nar/gkr1090
By:
- Lamesch, Philippe;
- Berardini, Tanya Z.;
- Li, Donghui;
- Swarbreck, David;
- Wilks, Christopher;
- Sasidharan, Rajkumar;
- Muller, Robert;
- Dreher, Kate;
- Alexander, Debbie L.;
- Garcia-Hernandez, Margarita;
- Karthikeyan, Athikkattuvalasu S.;
- Lee, Cynthia H.;
- Nelson, William D.;
- Ploetz, Larry;
- Singh, Shanker;
- Wensel, April;
- Huala, Eva
Publication type:
Article
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Published in:
Nucleic Acids Research, 2012, p. D742, doi. 10.1093/nar/gkr1014
By:
- Caspi, Ron;
- Altman, Tomer;
- Dreher, Kate;
- Fulcher, Carol A.;
- Subhraveti, Pallavi;
- Keseler, Ingrid M.;
- Kothari, Anamika;
- Krummenacker, Markus;
- Latendresse, Mario;
- Mueller, Lukas A.;
- Ong, Quang;
- Paley, Suzanne;
- Pujar, Anuradha;
- Shearer, Alexander G.;
- Travers, Michael;
- Weerasinghe, Deepika;
- Zhang, Peifen;
- Karp, Peter D.
Publication type:
Article
Scalable Sparse Testing Genomic Selection Strategy for Early Yield Testing Stage.
Published in:
Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.658978
By:
- Atanda, Sikiru Adeniyi;
- Olsen, Michael;
- Crossa, Jose;
- Burgueño, Juan;
- Rincent, Renaud;
- Dzidzienyo, Daniel;
- Beyene, Yoseph;
- Gowda, Manje;
- Dreher, Kate;
- Boddupalli, Prasanna M.;
- Tongoona, Pangirayi;
- Danquah, Eric Yirenkyi;
- Olaoye, Gbadebo;
- Robbins, Kelly R.
Publication type:
Article
From bits to bites: Advancement of the Germinate platform to support prebreeding informatics for crop wild relatives.
Published in:
Crop Science, 2021, v. 61, n. 3, p. 1538, doi. 10.1002/csc2.20248
By:
- Raubach, Sebastian;
- Kilian, Benjamin;
- Dreher, Kate;
- Amri, Ahmed;
- Bassi, Filippo M.;
- Boukar, Ousmane;
- Cook, Douglas;
- Cruickshank, Alan;
- Fatokun, Christian;
- El Haddad, Noureddine;
- Humphries, Alan;
- Jordan, David;
- Kehel, Zakaria;
- Kumar, Shiv;
- Labarosa, Sandy Jan;
- Nguyen, Loi Huu;
- Mace, Emma;
- McCouch, Susan;
- McNally, Ken;
- Marshall, David F.
Publication type:
Article
Germinate 3: Development of a Common Platform to Support the Distribution of Experimental Data on Crop Wild Relatives.
Published in:
Crop Science, 2017, v. 57, n. 3, p. 1259, doi. 10.2135/cropsci2016.09.0814
By:
- Shaw, Paul D.;
- Raubach, Sebastian;
- Hearne, Sarah J.;
- Dreher, Kate;
- Bryan, Glenn;
- Mckenzie, Gaynor;
- Milne, Iain;
- Stephen, Gordon;
- Marshall, David F.
Publication type:
Article
Maximizing efficiency of genomic selection in CIMMYT's tropical maize breeding program.
Published in:
Theoretical & Applied Genetics, 2021, v. 134, n. 1, p. 279, doi. 10.1007/s00122-020-03696-9
By:
- Atanda, Sikiru Adeniyi;
- Olsen, Michael;
- Burgueño, Juan;
- Crossa, Jose;
- Dzidzienyo, Daniel;
- Beyene, Yoseph;
- Gowda, Manje;
- Dreher, Kate;
- Zhang, Xuecai;
- Prasanna, Boddupalli M.;
- Tongoona, Pangirayi;
- Danquah, Eric Yirenkyi;
- Olaoye, Gbadebo;
- Robbins, Kelly R.
Publication type:
Article
Money matters (II): costs of maize inbred line conversion schemes at CIMMYT using conventional and marker-assisted selection.
Published in:
Molecular Breeding, 2003, v. 11, n. 3, p. 235, doi. 10.1023/A:1022872604743
By:
- Morris, Michael;
- Dreher, Kate;
- Ribaut, Jean-Marcel;
- Khairallah, Mireille
Publication type:
Article
Money matters (I): costs of field and laboratory procedures associated with conventional and marker-assisted maize breeding at CIMMYT.
Published in:
Molecular Breeding, 2003, v. 11, n. 3, p. 221, doi. 10.1023/A:1022820520673
By:
- Dreher, Kate;
- Khairallah, Mireille;
- Ribaut, Jean-Marcel;
- Morris, Michael
Publication type:
Article
Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants.
Published in:
Plant Physiology, 2017, v. 173, n. 4, p. 2041, doi. 10.1104/pp.16.01942
By:
- Schläpfer, Pascal;
- Peifen Zhang;
- Chuan Wang;
- Taehyong Kim;
- Michael Banf;
- Lee Chae;
- Dreher, Kate;
- Chavali, Arvind K.;
- Nilo-Poyanco, Ricardo;
- Bernard, Thomas;
- Kahn, Daniel;
- Rhee, Seung Y.
Publication type:
Article
Patterns of Metabolite Changes Identified from Large-Scale Gene Perturbations in Arabidopsis Using a Genome-Scale Metabolic Network.
Published in:
Plant Physiology, 2015, v. 167, n. 4, p. 1685, doi. 10.1104/pp.114.252361
By:
- Taehyong Kim;
- Dreher, Kate;
- Nilo-Poyanco, Ricardo;
- Insuk Lee;
- Fiehn, Oliver;
- Lange, Bernd Markus;
- Nikolau, Basil J.;
- Sumner, Lloyd;
- Welti, Ruth;
- Wurtele, Eve S.;
- Rhee, Seung Y.
Publication type:
Article
Creation of a Genome-Wide Metabolic Pathway Database for Populus trichocarpa Using a New Approach for Reconstruction and Curation of Metabolic Pathways for Plants.
Published in:
Plant Physiology, 2010, v. 153, n. 4, p. 1479, doi. 10.1104/pp.110.157396
By:
- Zhang, Peifen;
- Dreher, Kate;
- Karthikeyan, A.;
- Chi, Anjo;
- Pujar, Anuradha;
- Caspi, Ron;
- Karp, Peter;
- Kirkup, Vanessa;
- Latendresse, Mario;
- Lee, Cynthia;
- Mueller, Lukas A.;
- Muller, Robert;
- Seung Yon Rhee
Publication type:
Article
PlantMetabolomics.org: A Web Portal for Plant Metabolomics Experiments.
Published in:
Plant Physiology, 2010, v. 152, n. 4, p. 1807, doi. 10.1104/pp.109.151027
By:
- Bais, Preeti;
- Moon, Stephanie M.;
- Kun He;
- Leitao, Ricardo;
- Dreher, Kate;
- Walk, Tom;
- Sucaet, Yves;
- Barkan, Lenore;
- Wohlgemuth, Gert;
- Roth, Mary R.;
- Wurtele, Eve Syrkin;
- Dixon, Philip;
- Fiehn, Oliver;
- Lange, B. Markus;
- Shulaev, Vladimir;
- Sumner, Lloyd W.;
- Welti, Ruth;
- Nikolau, Basil J.;
- Rhee, Seung Y.;
- Dickerson, Julie A.
Publication type:
Article
Low-Density Reference Fingerprinting SNP Dataset of CIMMYT Maize Lines for Quality Control and Genetic Diversity Analyses.
Published in:
Plants (2223-7747), 2022, v. 11, n. 22, p. 3092, doi. 10.3390/plants11223092
By:
- Qu, Jingtao;
- Chassaigne-Ricciulli, Alberto A.;
- Fu, Fengling;
- Yu, Haoqiang;
- Dreher, Kate;
- Nair, Sudha K.;
- Gowda, Manje;
- Beyene, Yoseph;
- Makumbi, Dan;
- Dhliwayo, Thanda;
- Vicente, Felix San;
- Olsen, Michael;
- Prasanna, Boddupalli M.;
- Li, Wanchen;
- Zhang, Xuecai
Publication type:
Article
Diversity analysis of 80,000 wheat accessions reveals consequences and opportunities of selection footprints.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18404-w
By:
- Sansaloni, Carolina;
- Franco, Jorge;
- Santos, Bruno;
- Percival-Alwyn, Lawrence;
- Singh, Sukhwinder;
- Petroli, Cesar;
- Campos, Jaime;
- Dreher, Kate;
- Payne, Thomas;
- Marshall, David;
- Kilian, Benjamin;
- Milne, Iain;
- Raubach, Sebastian;
- Shaw, Paul;
- Stephen, Gordon;
- Carling, Jason;
- Pierre, Carolina Saint;
- Burgueño, Juan;
- Crosa, José;
- Li, HuiHui
Publication type:
Article

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