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De novo assembly of the olive fruit fly (Bactrocera oleae) genome with linked-reads and long-read technologies minimizes gaps and provides exceptional Y chromosome assembly.
Published in:
BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6672-3
By:
- Bayega, Anthony;
- Djambazian, Haig;
- Tsoumani, Konstantina T.;
- Gregoriou, Maria-Eleni;
- Sagri, Efthimia;
- Drosopoulou, Eleni;
- Mavragani-Tsipidou, Penelope;
- Giorda, Kristina;
- Tsiamis, George;
- Bourtzis, Kostas;
- Oikonomopoulos, Spyridon;
- Dewar, Ken;
- Church, Deanna M.;
- Papanicolaou, Alexie;
- Mathiopoulos, Kostas D.;
- Ragoussis, Jiannis
Publication type:
Article
The transcriptional landscape of Shh medulloblastoma.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21883-0
By:
- Skowron, Patryk;
- Farooq, Hamza;
- Cavalli, Florence M. G.;
- Morrissy, A. Sorana;
- Ly, Michelle;
- Hendrikse, Liam D.;
- Wang, Evan Y.;
- Djambazian, Haig;
- Zhu, Helen;
- Mungall, Karen L.;
- Trinh, Quang M.;
- Zheng, Tina;
- Dai, Shizhong;
- Stucklin, Ana S. Guerreiro;
- Vladoiu, Maria C.;
- Fong, Vernon;
- Holgado, Borja L.;
- Nor, Carolina;
- Wu, Xiaochong;
- Abd-Rabbo, Diala
Publication type:
Article
Fusion of TTYH1 with the C19MC microRNA cluster drives expression of a brain-specific DNMT3B isoform in the embryonal brain tumor ETMR.
Published in:
Nature Genetics, 2014, v. 46, n. 1, p. 39, doi. 10.1038/ng.2849
By:
- Kleinman, Claudia L;
- Gerges, Noha;
- Papillon-Cavanagh, Simon;
- Sin-Chan, Patrick;
- Pramatarova, Albena;
- Quang, Dong-Anh Khuong;
- Adoue, Véronique;
- Busche, Stephan;
- Caron, Maxime;
- Djambazian, Haig;
- Bemmo, Amandine;
- Fontebasso, Adam M;
- Spence, Tara;
- Schwartzentruber, Jeremy;
- Albrecht, Steffen;
- Hauser, Peter;
- Garami, Miklos;
- Klekner, Almos;
- Bognar, Laszlo;
- Montes, Jose-Luis
Publication type:
Article
Benchmarking of the Oxford Nanopore MinION sequencing for quantitative and qualitative assessment of cDNA populations.
Published in:
Scientific Reports, 2016, p. 31602, doi. 10.1038/srep31602
By:
- Oikonomopoulos, Spyros;
- Wang, Yu Chang;
- Djambazian, Haig;
- Badescu, Dunarel;
- Ragoussis, Jiannis
Publication type:
Article
Locally Adaptive Inversions Modulate Genetic Variation at Different Geographic Scales in a Seaweed Fly.
Published in:
Molecular Biology & Evolution, 2021, v. 38, n. 9, p. 3953, doi. 10.1093/molbev/msab143
By:
- Mérot, Claire;
- Berdan, Emma L;
- Cayuela, Hugo;
- Djambazian, Haig;
- Ferchaud, Anne-Laure;
- Laporte, Martin;
- Normandeau, Eric;
- Ragoussis, Jiannis;
- Wellenreuther, Maren;
- Bernatchez, Louis
Publication type:
Article
Invasive growth associated with cold-inducible RNA-binding protein expression drives recurrence of surgically resected brain metastases.
Published in:
Neuro-Oncology, 2021, v. 23, n. 9, p. 1470, doi. 10.1093/neuonc/noab002
By:
- Dankner, Matthew;
- Caron, Maxime;
- Al-Saadi, Tariq;
- Yu, WenQing;
- Ouellet, Véronique;
- Ezzeddine, Rima;
- Maritan, Sarah M;
- Annis, Matthew G;
- Le, Phuong Uyen;
- Nadaf, Javad;
- Neubarth, Noah S;
- Savage, Paul;
- Zuo, Dongmei;
- Couturier, Charles P;
- Monlong, Jean;
- Djambazian, Haig;
- Altoukhi, Huda;
- Bourque, Guillaume;
- Ragoussis, Jiannis;
- Diaz, Roberto J
Publication type:
Article
Genomic and cytogenetic analysis of the Ceratitis capitata temperature-sensitive lethal region.
Published in:
G3: Genes | Genomes | Genetics, 2023, v. 13, n. 6, p. 1, doi. 10.1093/g3journal/jkad074
By:
- Sollazzo, Germano;
- Gouvi, Georgia;
- Nikolouli, Katerina;
- Aumann, Roswitha A.;
- Djambazian, Haig;
- Whitehead, Mark A.;
- Berube, Pierre;
- Shu-Huang Chen;
- Tsiamis, George;
- Darby, Alistair C.;
- Ragoussis, Jiannis;
- Schetelig, Marc F.;
- Bourtzis, Kostas
Publication type:
Article
Chromosome-level assembly reveals a putative Y-autosomal fusion in the sex determination system of the Greenland Halibut (Reinhardtius hippoglossoides).
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab376
By:
- Ferchaud, Anne-Laure;
- Mérot, Claire;
- Normandeau, Eric;
- Ragoussis, Jiannis;
- Babin, Charles;
- Djambazian, Haig;
- Bérubé, Pierre;
- Audet, Céline;
- Treble, Margaret;
- Walkusz, Wojciech;
- Bernatchez, Louis
Publication type:
Article
Multilevel Space-Time Aggregation for Bright Field Cell Microscopy Segmentation and Tracking.
Published in:
International Journal of Biomedical Imaging, 2010, p. 1, doi. 10.1155/2010/582760
By:
- Inglis, Tiffany;
- De Sterck, Hans;
- Sanders, Geoffrey;
- Djambazian, Haig;
- Sladek, Robert;
- Sundararajan, Saravanan;
- Hudson, Thomas J.
Publication type:
Article
Correction to: Alternative Splicing of Opioid Receptor Genes Shows a Conserved Pattern for 6TM Receptor Variants.
Published in:
2021
By:
- Piltonen, Marjo;
- Krokhotin, Andrey;
- Parisien, Marc;
- Bérubé, Pierre;
- Djambazian, Haig;
- Sladek, Rob;
- Dokholyan, Nikolay V.;
- Shabalina, Svetlana A.;
- Diatchenko, Luda
Publication type:
Correction Notice
Alternative Splicing of Opioid Receptor Genes Shows a Conserved Pattern for 6TM Receptor Variants.
Published in:
Cellular & Molecular Neurobiology, 2021, v. 41, n. 5, p. 1039, doi. 10.1007/s10571-020-00971-7
By:
- Piltonen, Marjo;
- Krokhotin, Andrey;
- Parisien, Marc;
- Bérubé, Pierre;
- Djambazian, Haig;
- Sladek, Rob;
- Dokholyan, Nikolay V.;
- Shabalina, Svetlana A.;
- Diatchenko, Luda
Publication type:
Article
Haplotype-resolved de novo assembly of the Vero cell line genome.
Published in:
NPJ Vaccines, 2021, v. 6, n. 1, p. 1, doi. 10.1038/s41541-021-00358-9
By:
- Sène, Marie-Angélique;
- Kiesslich, Sascha;
- Djambazian, Haig;
- Ragoussis, Jiannis;
- Xia, Yu;
- Kamen, Amine A.
Publication type:
Article
Panmixia in the American eel extends to its tropical range of distribution: Biological implications and policymaking challenges.
Published in:
Evolutionary Applications, 2023, v. 16, n. 12, p. 1872, doi. 10.1111/eva.13599
By:
- Ulmo‐Diaz, Gabriela;
- Engman, Augustin;
- McLarney, William O.;
- Lasso Alcalá, Carlos A.;
- Hendrickson, Dean;
- Bezault, Etienne;
- Feunteun, Eric;
- Prats‐Léon, Fernando L.;
- Wiener, Jean;
- Maxwell, Robert;
- Mohammed, Ryan S.;
- Kwak, Thomas J.;
- Benchetrit, José;
- Bougas, Bérénice;
- Babin, Charles;
- Normandeau, Eric;
- Djambazian, Haig H. V.;
- Chen, Shu‐Huang;
- Reiling, Sarah J.;
- Ragoussis, Jiannis
Publication type:
Article
SARS-CoV-2 rapidly evolves lineage-specific phenotypic differences when passaged repeatedly in immune-naïve mice.
Published in:
Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-05878-3
By:
- Willett, Julian Daniel Sunday;
- Gravel, Annie;
- Dubuc, Isabelle;
- Gudimard, Leslie;
- dos Santos Pereira Andrade, Ana Claudia;
- Lacasse, Émile;
- Fortin, Paul;
- Liu, Ju-Ling;
- Cervantes, Jose Avila;
- Galvez, Jose Hector;
- Djambazian, Haig Hugo Vrej;
- Zwaig, Melissa;
- Roy, Anne-Marie;
- Lee, Sally;
- Chen, Shu-Huang;
- Ragoussis, Jiannis;
- Flamand, Louis
Publication type:
Article
A chromosome‐anchored genome assembly for Lake Trout (Salvelinus namaycush).
Published in:
Molecular Ecology Resources, 2022, v. 22, n. 2, p. 679, doi. 10.1111/1755-0998.13483
By:
- Smith, Seth R.;
- Normandeau, Eric;
- Djambazian, Haig;
- Nawarathna, Pubudu M.;
- Berube, Pierre;
- Muir, Andrew M.;
- Ragoussis, Jiannis;
- Penney, Chantelle M.;
- Scribner, Kim T.;
- Luikart, Gordon;
- Wilson, Chris C.;
- Bernatchez, Louis
Publication type:
Article
The living microarray: a high-throughput platform for measuring transcription dynamics in single cells.
Published in:
BMC Genomics, 2011, v. 12, p. 1, doi. 10.1186/1471-2164-12-115
By:
- Rajan, Saravanan;
- Djambazian, Haig;
- Dang, Huan Chu Pham;
- Sladek, Rob;
- Hudson, Thomas J
Publication type:
Article
The living microarray: a high-throughput platform for measuring transcription dynamics in single cells.
Published in:
BMC Genomics, 2011, v. 12, n. 1, p. 115, doi. 10.1186/1471-2164-12-115
By:
- Rajan, Saravanan;
- Djambazian, Haig;
- Huan Chu Pham Dang;
- Sladek, Rob;
- Hudson, Thomas J.
Publication type:
Article
Alternative Splicing of the Delta-Opioid Receptor Gene Suggests Existence of New Functional Isoforms.
Published in:
Molecular Neurobiology, 2019, v. 56, n. 4, p. 2855, doi. 10.1007/s12035-018-1253-z
By:
- Piltonen, Marjo;
- Parisien, Marc;
- Grégoire, Stéphanie;
- Chabot-Doré, Anne-Julie;
- Jafarnejad, Seyed Mehdi;
- Bérubé, Pierre;
- Djambazian, Haig;
- Sladek, Rob;
- Geneau, Geneviève;
- Willett, Patrick;
- Stone, Laura S.;
- Shabalina, Svetlana A.;
- Diatchenko, Luda
Publication type:
Article
White pupae phenotype of tephritids is caused by parallel mutations of a MFS transporter.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-020-20680-5
By:
- Ward, Christopher M.;
- Aumann, Roswitha A.;
- Whitehead, Mark A.;
- Nikolouli, Katerina;
- Leveque, Gary;
- Gouvi, Georgia;
- Fung, Elisabeth;
- Reiling, Sarah J.;
- Djambazian, Haig;
- Hughes, Margaret A.;
- Whiteford, Sam;
- Caceres-Barrios, Carlos;
- Nguyen, Thu N. M.;
- Choo, Amanda;
- Crisp, Peter;
- Sim, Sheina B.;
- Geib, Scott M.;
- Marec, František;
- Häcker, Irina;
- Ragoussis, Jiannis
Publication type:
Article
Model-based analysis of sample index hopping reveals its widespread artifacts in multiplexed single-cell RNA-sequencing.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16522-z
By:
- Farouni, Rick;
- Djambazian, Haig;
- Ferri, Lorenzo E.;
- Ragoussis, Jiannis;
- Najafabadi, Hamed S.
Publication type:
Article

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