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A method to comprehensively identify germline SNVs, INDELs and CNVs from whole exome sequencing data of BRCA1/2 negative breast cancer patients.
Published in:
NAR Genomics & Bioinformatics, 2024, v. 6, n. 2, p. 1, doi. 10.1093/nargab/lqae033
By:
- Bianchi, Andrea;
- Zelli, Veronica;
- D'Angelo, Andrea;
- Di Matteo, Alessandro;
- Scoccia, Giulia;
- Cannita, Katia;
- Dimas, Antigone S.;
- Glentis, Stavros;
- eroni, Francesca Zazz;
- Alesse, Edoardo;
- Di Marco, Antinisca;
- Tessitore, Alessandra
Publication type:
Article
Genome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci.
Published in:
Nature Genetics, 2011, v. 43, n. 10, p. 984, doi. 10.1038/ng.921
By:
- Kooner, Jaspal S;
- Saleheen, Danish;
- Sim, Xueling;
- Sehmi, Joban;
- Zhang, Weihua;
- Frossard, Philippe;
- Been, Latonya F;
- Chia, Kee-Seng;
- Dimas, Antigone S;
- Hassanali, Neelam;
- Jafar, Tazeen;
- Jowett, Jeremy B M;
- Li, Xinzhong;
- Radha, Venkatesan;
- Rees, Simon D;
- Takeuchi, Fumihiko;
- Young, Robin;
- Aung, Tin;
- Basit, Abdul;
- Chidambaram, Manickam
Publication type:
Article
Genome-wide association study of migraine implicates a common susceptibility variant on 8q22.1.
Published in:
Nature Genetics, 2010, v. 42, n. 10, p. 869, doi. 10.1038/ng.652
By:
- Anttila, Verneri;
- Stefansson, Hreinn;
- Kallela, Mikko;
- Todt, Unda;
- Terwindt, Gisela M.;
- Calafato, M. Stella;
- Nyholt, Dale R.;
- Dimas, Antigone S.;
- Freilinger, Tobias;
- Müller-Myhsok, Bertram;
- Artto, Ville;
- Inouye, Michael;
- Alakurtti, Kirsi;
- Kaunisto, Mari A.;
- Hämäläinen, Eija;
- de Vries, Boukje;
- Stam, Anine H.;
- Weller, Claudia M.;
- Heinze, Axel;
- Heinze-Kuhn, Katja
Publication type:
Article
Data analysis issues for allele-specific expression using Illumina's GoldenGate assay.
Published in:
BMC Bioinformatics, 2010, v. 11, p. 280, doi. 10.1186/1471-2105-11-280
By:
- Ritchie, Matthew E.;
- Forrest, Matthew S.;
- Dimas, Antigone S.;
- Daelemans, Caroline;
- Dermitzakis, Emmanouil T.;
- Deloukas, Panagiotis;
- Tavaré, Simon
Publication type:
Article
Exome Sequencing in BRCA1- and BRCA2 -Negative Greek Families Identifies MDM1 and NBEAL1 as Candidate Risk Genes for Hereditary Breast Cancer.
Published in:
Frontiers in Genetics, 2019, p. 1, doi. 10.3389/fgene.2019.01005
By:
- Glentis, Stavros;
- Dimopoulos, Alexandros C.;
- Rouskas, Konstantinos;
- Ntritsos, George;
- Evangelou, Evangelos;
- Narod, Steven A.;
- Mes-Masson, Anne-Marie;
- Foulkes, William D.;
- Rivera, Barbara;
- Tonin, Patricia N.;
- Ragoussis, Jiannis;
- Dimas, Antigone S.
Publication type:
Article
Obesity Reshapes the Microbial Population Structure along the Gut-Liver-Lung Axis in Mice.
Published in:
Biomedicines, 2022, v. 10, n. 2, p. 494, doi. 10.3390/biomedicines10020494
By:
- Galaris, Apostolos;
- Fanidis, Dionysios;
- Stylianaki, Elli-Anna;
- Harokopos, Vaggelis;
- Kalantzi, Alexandra-Styliani;
- Moulos, Panagiotis;
- Dimas, Antigone S.;
- Hatzis, Pantelis;
- Aidinis, Vassilis
Publication type:
Article
Patterns of Cis Regulatory Variation in Diverse Human Populations.
Published in:
PLoS Genetics, 2012, v. 8, n. 4, p. 1, doi. 10.1371/journal.pgen.1002639
By:
- Stranger, Barbara E.;
- Montgomery, Stephen B.;
- Dimas, Antigone S.;
- Parts, Leopold;
- Stegle, Oliver;
- Ingle, Catherine E.;
- Sekowska, Magda;
- Smith, George Davey;
- Evans, David;
- Gutierrez-Arcelus, Maria;
- Price, Alkes;
- Raj, Towfique;
- Nisbett, James;
- Nica, Alexandra C.;
- Beazley, Claude;
- Durbin, Richard;
- Deloukas, Panos;
- Dermitzakis, Emmanouil T.
Publication type:
Article
The Architecture of Gene Regulatory Variation across Multiple Human Tissues: The MuTHER Study.
Published in:
PLoS Genetics, 2011, v. 7, n. 2, p. 1, doi. 10.1371/journal.pgen.1002003
By:
- Nica, Alexandra C.;
- Parts, Leopold;
- Glass, Daniel;
- Nisbet, James;
- Barrett, Amy;
- Sekowska, Magdalena;
- Travers, Mary;
- Potter, Simon;
- Grundberg, Elin;
- Small, Kerrin;
- Hedman, Asa K.;
- Bataille, Veronique;
- Bell, Jordana Tzenova;
- Surdulescu, Gabriela;
- Dimas, Antigone S.;
- Ingle, Catherine;
- Nestle, Frank O.;
- di Meglio, Paola;
- Min, Josine L.;
- Wilk, Alicja
Publication type:
Article
Candidate Causal Regulatory Effects by Integration of Expression QTLs with Complex Trait Genetic Associations.
Published in:
PLoS Genetics, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pgen.1000895
By:
- Nica, Alexandra C.;
- Montgomery, Stephen B.;
- Dimas, Antigone S.;
- Stranger, Barbara E.;
- Beazley, Claude;
- Barroso, Inês;
- Dermitzakis, Emmanouil T.
Publication type:
Article
Modifier Effects between Regulatory and Protein-Coding Variation.
Published in:
PLoS Genetics, 2008, v. 4, n. 10, p. 1, doi. 10.1371/journal.pgen.1000244
By:
- Dimas, Antigone S.;
- Stranger, Barbara E.;
- Beazley, Claude;
- Finn, Robert D.;
- Ingle, Catherine E.;
- Forrest, Matthew S.;
- Ritchie, Matthew E.;
- Deloukas, Panos;
- Tavaré, Simon;
- Dermitzakis, Emmanouil T.
Publication type:
Article
Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies.
Published in:
Bioinformatics, 2010, v. 26, n. 19, p. 2474, doi. 10.1093/bioinformatics/btq452
By:
- Tsun-Po Yang;
- Beazley, Claude;
- Montgomery, Stephen B.;
- Dimas, Antigone S.;
- Gutierrez-Arcelus, Maria;
- Stranger, Barbara E.;
- Deloukas, Panos;
- Dermitzakis, Emmanouil T.
Publication type:
Article
Publisher Correction: Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.
Published in:
2021
By:
- Lagou, Vasiliki;
- Mägi, Reedik;
- Hottenga, Jouke- Jan;
- Grallert, Harald;
- Perry, John R. B.;
- Bouatia-Naji, Nabila;
- Marullo, Letizia;
- Rybin, Denis;
- Jansen, Rick;
- Min, Josine L.;
- Dimas, Antigone S.;
- Ulrich, Anna;
- Zudina, Liudmila;
- Gådin, Jesper R.;
- Jiang, Longda;
- Faggian, Alessia;
- Bonnefond, Amélie;
- Fadista, Joao;
- Stathopoulou, Maria G.;
- Isaacs, Aaron
Publication type:
Correction Notice
Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-020-19366-9
By:
- Lagou, Vasiliki;
- Mägi, Reedik;
- Hottenga, Jouke- Jan;
- Grallert, Harald;
- Perry, John R. B.;
- Bouatia-Naji, Nabila;
- Marullo, Letizia;
- Rybin, Denis;
- Jansen, Rick;
- Min, Josine L.;
- Dimas, Antigone S.;
- Ulrich, Anna;
- Zudina, Liudmila;
- Gådin, Jesper R.;
- Jiang, Longda;
- Faggian, Alessia;
- Bonnefond, Amélie;
- Fadista, Joao;
- Stathopoulou, Maria G.;
- Isaacs, Aaron
Publication type:
Article
Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-020-19366-9
By:
- Lagou, Vasiliki;
- Mägi, Reedik;
- Hottenga, Jouke- Jan;
- Grallert, Harald;
- Perry, John R. B.;
- Bouatia-Naji, Nabila;
- Marullo, Letizia;
- Rybin, Denis;
- Jansen, Rick;
- Min, Josine L.;
- Dimas, Antigone S.;
- Ulrich, Anna;
- Zudina, Liudmila;
- Gådin, Jesper R.;
- Jiang, Longda;
- Faggian, Alessia;
- Bonnefond, Amélie;
- Fadista, Joao;
- Stathopoulou, Maria G.;
- Isaacs, Aaron
Publication type:
Article
Impact of Type 2 Diabetes Susceptibility Variants on Quantitative Glycemic Traits Reveals Mechanistic Heterogeneity.
Published in:
Diabetes, 2014, v. 63, n. 6, p. 2158, doi. 10.2337/db13-0949
By:
- Dimas, Antigone S.;
- Lagou, Vasiliki;
- Barker, Adam;
- Knowles, Joshua W.;
- Mägi, Reedik;
- Hivert, Marie-France;
- Benazzo, Andrea;
- Rybin, Denis;
- Jackson, Anne U.;
- Stringham, Heather M.;
- Ci Song;
- Fischer-Rosinsky, Antje;
- Boesgaard, Trine Welløv;
- Grarup, Niels;
- Abbasi, Fahim A.;
- Assimes, Themistocles L.;
- Ke Hao;
- Xia Yang;
- Lecoeur, Cécile;
- Barroso, Inês
Publication type:
Article
Genome-Wide Association Identifies Nine Common Variants Associated With Fasting Proinsulin Levels and Provides New Insights Into the Pathophysiology of Type 2 Diabetes.
Published in:
Diabetes, 2011, v. 60, n. 10, p. 2624, doi. 10.2337/db11-0415
By:
- Dupuis, Josée;
- Prokopenko, Inga;
- Barker, Adam;
- Ahlqvist, Emma;
- Rybin, Denis;
- Petrie, John R.;
- Travers, Mary E.;
- Bouatia-Naji, Nabila;
- Dimas, Antigone S.;
- Nica, Alexandra;
- Wheeler, Eleanor;
- Chen, Han;
- Voight, Benjamin F.;
- Taneera, Jalal;
- Kanoni, Stavroula;
- Peden, John F.;
- Turrini, Fabiola;
- Gustafsson, Stefan;
- Zabena, Carina;
- Almgren, Peter
Publication type:
Article

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