Works matching AU Diehl, Alexander D

Results: 26

Impaired immune responses and altered peptide repertoire in tapasin-deficient mice.

Published in:

Nature Immunology, 2000, v. 1, n. 3, p. 234, doi. 10.1038/79775

By:

Garbi, Natalio;
Tan, Pamela;
Diehl, Alexander D.;
Chambers, Benedict J.;
Ljunggren, Hans-Gustaf;
Momburg, Frank;
Hämmerling, Günter J.

Publication type:

Article

The neurological disease ontology.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 3, doi. 10.1186/2041-1480-4-42

By:

Jensen, Mark;
Cox, Alexander P.;
Chaudhry, Naveed;
Ng, Marcus;
Sule, Donat;
Duncan, William;
Weinstock-Guttman, Bianca;
Smith, Barry;
Ruttenberg, Alan;
Szigeti, Kinga;
Diehl, Alexander D.;
Ray, Patrick

Publication type:

Article

GlycoEnzOnto: a GlycoEnzyme pathway and molecular function ontology.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5413, doi. 10.1093/bioinformatics/btac704

By:

Groth, Theodore;
Diehl, Alexander D;
Gunawan, Rudiyanto;
Neelamegham, Sriram

Publication type:

Article

Ontology development for biological systems: immunology.

Published in:

Bioinformatics, 2007, v. 23, n. 7, p. 913, doi. 10.1093/bioinformatics/btm029

By:

Alexander D. Diehl;
Jamie A. Lee;
Richard H. Scheuermann;
Judith A. Blake

Publication type:

Article

Reporting and connecting cell type names and gating definitions through ontologies.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 259, doi. 10.1186/s12859-019-2725-5

By:

Overton, James A.;
Vita, Randi;
Dunn, Patrick;
Burel, Julie G.;
Bukhari, Syed Ahmad Chan;
Cheung, Kei-Hoi;
Kleinstein, Steven H.;
Diehl, Alexander D.;
Peters, Bjoern

Publication type:

Article

OSCI: standardized stem cell ontology representation and use cases for stem cell investigation.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 237, doi. 10.1186/s12859-019-2723-7

By:

He, Yongqun;
Duncan, William D.;
Cooper, Daniel J.;
Hansen, Jens;
Iyengar, Ravi;
Ong, Edison;
Walker, Kendal;
Tibi, Omar;
Smith, Sam;
Serra, Lucas M.;
Zheng, Jie;
Sarntivijai, Sirarat;
Schürer, Stephan;
O'Shea, K. Sue;
Diehl, Alexander D.

Publication type:

Article

An ontology for representing hematologic malignancies: the cancer cell ontology.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 231, doi. 10.1186/s12859-019-2722-8

By:

Serra, Lucas M.;
Duncan, William D.;
Diehl, Alexander D.

Publication type:

Article

Cells in ExperimentaL Life Sciences (CELLS-2018): capturing the knowledge of normal and diseased cells with ontologies.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 227, doi. 10.1186/s12859-019-2721-9

By:

Sarntivijai, Sirarat;
He, Yongqun;
Diehl, Alexander D.

Publication type:

Article

Cells in experimental life sciences - challenges and solution to the rapid evolution of knowledge.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1976-2

By:

Sarntivijai, Sirarat;
Diehl, Alexander D.;
Yongqun He

Publication type:

Article

flowCL: ontology-based cell population labelling in flow cytometry.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1337, doi. 10.1093/bioinformatics/btu807

By:

Courtot, Mélanie;
Meskas, Justin;
Diehl, Alexander D.;
Droumeva, Radina;
Gottardo, Raphael;
Jalali, Adrin;
Taghiyar, Mohammad Jafar;
Maecker, Holden T.;
McCoy, J. Philip;
Ruttenberg, Alan;
Scheuermann, Richard H.;
Brinkman, Ryan R.

Publication type:

Article

flowCL: ontology-based cell population labelling in flow cytometry.

Published in:

2015

By:

Courtot, Mélanie;
Meskas, Justin;
Diehl, Alexander D.;
Droumeva, Radina;
Gottardo, Raphael;
Jalali, Adrin;
Taghiyar, Mohammad Jafar;
Maecker, Holden T.;
McCoy, J. Philip;
Ruttenberg, Alan;
Scheuermann, Richard H.;
Brinkman, Ryan R.

Publication type:

Product Review

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI).

Published in:

Journal of Biomedical Semantics, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s13326-024-00320-3

By:

Toro, Sabrina;
Anagnostopoulos, Anna V.;
Bello, Susan M.;
Blumberg, Kai;
Cameron, Rhiannon;
Carmody, Leigh;
Diehl, Alexander D.;
Dooley, Damion M.;
Duncan, William D.;
Fey, Petra;
Gaudet, Pascale;
Harris, Nomi L.;
Joachimiak, Marcin P.;
Kiani, Leila;
Lubiana, Tiago;
Munoz-Torres, Monica C.;
O'Neil, Shawn;
Osumi-Sutherland, David;
Puig-Barbe, Aleix;
Reese, Justin T.

Publication type:

Article

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.

Published in:

Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0088-7

By:

Diehl, Alexander D.;
Meehan, Terrence F.;
Bradford, Yvonne M.;
Brush, Matthew H.;
Dahdul, Wasila M.;
Dougall, David S.;
Yongqun He;
Osumi-Sutherland, David;
Ruttenberg, Alan;
Sarntivijai, Sirarat;
Van Slyke, Ceri E.;
Vasilevsky, Nicole A.;
Haendel, Melissa A.;
Blake, Judith A.;
Mungall, Christopher J.

Publication type:

Article

Representing vision and blindness.

Published in:

Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0058-0

By:

Ray, Patrick L.;
Cox, Alexander P.;
Jensen, Mark;
Allen, Travis;
Duncan, William;
Diehl, Alexander D.

Publication type:

Article

Access to immunology through the Gene Ontology.

Published in:

Immunology, 2008, v. 125, n. 2, p. 154, doi. 10.1111/j.1365-2567.2008.02940.x

By:

Lovering, Ruth C.;
Camon, Evelyn B.;
Blake, Judith A.;
Diehl, Alexander D.

Publication type:

Article

Ontology based molecular signatures for immune cell types via gene expression analysis.

Published in:

BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-263

By:

Meehan, Terrence F.;
Vasilevsky, Nicole A.;
Mungall, Christopher J.;
Dougall, David S.;
Haendel, Melissa A.;
Blake, Judith A.;
Diehl, Alexander D.

Publication type:

Article

Logical Development of the Cell Ontology.

Published in:

BMC Bioinformatics, 2011, v. 12, n. 1, p. 1, doi. 10.1186/1471-2105-12-6

By:

Meehan, Terrence F.;
Masci, Anna Maria;
Abdulla, Amina;
Cowell, Lindsay G.;
Blake, Judith A.;
Mungall, Christopher J.;
Diehl, Alexander D.

Publication type:

Article

An improved ontological representation of dendritic cells as a paradigm for all cell types.

Published in:

BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-70

By:

Masci, Anna Maria;
Arighi, Cecilia N.;
Diehl, Alexander D.;
Lieberman, Anne E.;
Mungall, Chris;
Scheuermann, Richard H.;
Smith, Barry;
Cowell, Lindsay G.

Publication type:

Article

Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.

Published in:

Nucleic Acids Research, 2017, v. 45, n. D1, p. D339, doi. 10.1093/nar/gkw1075

By:

Natale, Darren A.;
Arighi, Cecilia N.;
Blake, Judith A.;
Bona, Jonathan;
Chuming Chen;
Sheng-Chih Chen;
Christie, Karen R.;
Cowart, Julie;
D’Eustachio, Peter;
Diehl, Alexander D.;
Drabkin, Harold J.;
Duncan, William D.;
Huang, Hongzhan;
Ren, Jia;
Ross, Karen;
Ruttenberg, Alan;
Shamovsky, Veronica;
Smith, Barry;
Qinghua Wang;
Jian Zhang

Publication type:

Article

Protein Ontology: a controlled structured network of protein entities.

Published in:

Nucleic Acids Research, 2014, v. 42, n. D1, p. D415, doi. 10.1093/nar/gkt1173

By:

Natale, Darren A.;
Arighi, Cecilia N.;
Blake, Judith A.;
Bult, Carol J.;
Christie, Karen R.;
Cowart, Julie;
D’Eustachio, Peter;
Diehl, Alexander D.;
Drabkin, Harold J.;
Helfer, Olivia;
Huang, Hongzhan;
Masci, Anna Maria;
Ren, Jia;
Roberts, Natalia V.;
Ross, Karen;
Ruttenberg, Alan;
Shamovsky, Veronica;
Smith, Barry;
Yerramalla, Meher Shruti;
Zhang, Jian

Publication type:

Article

Gateways to the FANTOM5 promoter level mammalian expression atlas.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-014-0560-6

By:

Lizio, Marina;
Harshbarger, Jayson;
Hisashi Shimoji;
Severin, Jessica;
Takeya Kasukawa;
Sahin, Serkan;
Abugessaisa, Imad;
Shiro Fukuda;
Fumi Hori;
Sachi Ishikawa-Kato;
Mungall, Christopher J.;
Arner, Erik;
Baillie, J. Kenneth;
Bertin, Nicolas;
Hidemasa Bono;
de Hoon, Michiel;
Diehl, Alexander D.;
Dimont, Emmanuel;
Freeman, Tom C.;
Kaori Fujieda

Publication type:

Article

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.

Published in:

Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab069

By:

Jackson, Rebecca;
Matentzoglu, Nicolas;
Overton, James A;
Vita, Randi;
Balhoff, James P;
Buttigieg, Pier Luigi;
Carbon, Seth;
Courtot, Melanie;
Diehl, Alexander D;
Dooley, Damion M;
Duncan, William D;
Harris, Nomi L;
Haendel, Melissa A;
Lewis, Suzanna E;
Natale, Darren A;
Osumi-Sutherland, David;
Ruttenberg, Alan;
Schriml, Lynn M;
Smith, Barry;
Stoeckert Jr., Christian J

Publication type:

Article

A Unified Anatomy Ontology of the Vertebrate Skeletal System.

Published in:

PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0051070

By:

Dahdul, Wasila M.;
Balhoff, James P.;
Blackburn, David C.;
Diehl, Alexander D.;
Haendel, Melissa A.;
Hall, Brian K.;
Lapp, Hilmar;
Lundberg, John G.;
Mungall, Christopher J.;
Ringwald, Martin;
Segerdell, Erik;
Van Slyke, Ceri E.;
Vickaryous, Matthew K.;
Westerfield, Monte;
Mabee, Paula M.

Publication type:

Article

Novel sequence feature variant type analysis of the HLA genetic association in systemic sclerosis.

Published in:

Human Molecular Genetics, 2010, v. 19, n. 4, p. 707, doi. 10.1093/hmg/ddp521

By:

Karp, David R.;
Marthandan, Nishanth;
Marsh, Steven G.E.;
Ahn, Chul;
Arnett, Frank C.;
DeLuca, David S.;
Diehl, Alexander D.;
Dunivin, Raymond;
Eilbeck, Karen;
Feolo, Michael;
Guidry, Paula A.;
Helmberg, Wolfgang;
Lewis, Suzanna;
Mayes, Maureen D.;
Mungall, Chris;
Natale, Darren A.;
Peters, Bjoern;
Petersdorf, Effie;
Reveille, John D.;
Smith, Barry

Publication type:

Article

The identification of a common pathogen-specific HLA class I A*0201-restricted cytotoxic T cell epitope encoded within the heat shock protein 65.

Published in:

European Journal of Immunology, 2001, v. 31, n. 12, p. 3602, doi. 10.1002/1521-4141(200112)31:12<3602::AID-IMMU3602>3.0.CO;2-L

By:

Charo, Jehad;
Geluk, Annemieke;
Sundbäck, Maria;
Mirzai, Babak;
Diehl, Alexander D.;
Malmberg, Karl-Johan;
Achour, Adnane;
Huriguchi, Shigetoshi;
Meijgaarden, Krista E. van;
Drijfhout, Jan-Wouter;
Beekman, Nico;
Veelen, Peter van;
Ossendorp, Ferry;
Ottenhoff, Tom H.M.;
Kiessling, Rolf

Publication type:

Article

Muscle Research and Gene Ontology: New standards for improved data integration.

Published in:

BMC Medical Genomics, 2009, v. 2, p. 1, doi. 10.1186/1755-8794-2-6

By:

Feltrin, Erika;
Campanaro, Stefano;
Diehl, Alexander D.;
Ehler, Elisabeth;
Faulkner, Georgine;
Fordham, Jennifer;
Gardin, Chiara;
Harris, Midori;
Hill, David;
Knoell, Ralph;
Laveder, Paolo;
Mittempergher, Lorenza;
Nori, Alessandra;
Reggiani, Carlo;
Sorrentino, Vincenzo;
Volpe, Pompeo;
Zara, Ivano;
Valle, Giorgio;
Clark, Jennifer Deegan née

Publication type:

Article