Found: 89
Select item for more details and to access through your institution.
RecGraph: recombination-aware alignment of sequences to variation graphs.
- Published in:
- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae292
- By:
- Publication type:
- Article
KmerAperture: Retaining k-mer synteny for alignment-free extraction of core and accessory differences between bacterial genomes.
- Published in:
- PLoS Genetics, 2024, v. 20, n. 4, p. 1, doi. 10.1371/journal.pgen.1011184
- By:
- Publication type:
- Article
Detection of a historic reservoir of bedaquiline/clofazimine resistance-associated variants in Mycobacterium tuberculosis.
- Published in:
- Genome Medicine, 2024, v. 16, p. 1, doi. 10.1186/s13073-024-01289-5
- By:
- Publication type:
- Article
Inference of Infectious Disease Transmission through a Relaxed Bottleneck Using Multiple Genomes Per Host.
- Published in:
- Molecular Biology & Evolution, 2024, v. 41, n. 1, p. 1, doi. 10.1093/molbev/msad288
- By:
- Publication type:
- Article
Within-host diversity improves phylogenetic and transmission reconstruction of SARS-CoV-2 outbreaks.
- Published in:
- eLife, 2023, p. 1, doi. 10.7554/eLife.84384
- By:
- Publication type:
- Article
Phylogenetic analysis of the origin and spread of plague in Madagascar.
- Published in:
- PLoS Neglected Tropical Diseases, 2023, v. 16, n. 5, p. 1, doi. 10.1371/journal.pntd.0010362
- By:
- Publication type:
- Article
Epidemiological impacts of the NHS COVID-19 app in England and Wales throughout its first year.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-36495-z
- By:
- Publication type:
- Article
Genomic Diversity among Actinomyces naeslundii Strains and Closely Related Species.
- Published in:
- Microorganisms, 2023, v. 11, n. 2, p. 254, doi. 10.3390/microorganisms11020254
- By:
- Publication type:
- Article
Distinguishing imported cases from locally acquired cases within a geographically limited genomic sample of an infectious disease.
- Published in:
- Bioinformatics, 2023, v. 39, n. 1, p. 1, doi. 10.1093/bioinformatics/btac761
- By:
- Publication type:
- Article
Model design for nonparametric phylodynamic inference and applications to pathogen surveillance.
- Published in:
- Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead028
- By:
- Publication type:
- Article
Bayesian Inference of Clonal Expansions in a Dated Phylogeny.
- Published in:
- Systematic Biology, 2022, v. 71, n. 5, p. 1073, doi. 10.1093/sysbio/syab095
- By:
- Publication type:
- Article
London parochial burial records from 1563 to 1665 indicate higher plague death rates for males than females: Some possible demographic and social explanations.
- Published in:
- PLoS ONE, 2022, v. 17, n. 8, p. 1, doi. 10.1371/journal.pone.0272278
- By:
- Publication type:
- Article
Transmission history of SARS-CoV-2 in humans and white-tailed deer.
- Published in:
- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-16071-z
- By:
- Publication type:
- Article
SARS-CoV-2 transmissibility compared between variants of concern and vaccination status.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 2, p. 1, doi. 10.1093/bib/bbab594
- By:
- Publication type:
- Article
Genomic signatures of pre-resistance in Mycobacterium tuberculosis.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27616-7
- By:
- Publication type:
- Article
Major genetic discontinuity and novel toxigenic species in Clostridioides difficile taxonomy.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.64325
- By:
- Publication type:
- Article
Additive Uncorrelated Relaxed Clock Models for the Dating of Genomic Epidemiology Phylogenies.
- Published in:
- Molecular Biology & Evolution, 2021, v. 38, n. 1, p. 307, doi. 10.1093/molbev/msaa193
- By:
- Publication type:
- Article
Population genomics and antimicrobial resistance in Corynebacterium diphtheriae.
- Published in:
- Genome Medicine, 2020, v. 12, n. 1, p. N.PAG, doi. 10.1186/s13073-020-00805-7
- By:
- Publication type:
- Article
Using rapid point-of-care tests to inform antibiotic choice to mitigate drug resistance in gonorrhoea.
- Published in:
- Eurosurveillance (15607917), 2020, v. 25, n. 43, p. 1, doi. 10.2807/1560-7917.ES.2020.25.43.1900210
- By:
- Publication type:
- Article
Assessment of the Potential of Vaccination to Combat Antibiotic Resistance in Gonorrhea: A Modeling Analysis to Determine Preferred Product Characteristics.
- Published in:
- Clinical Infectious Diseases, 2020, v. 71, n. 8, p. 1912, doi. 10.1093/cid/ciz1241
- By:
- Publication type:
- Article
Inference of person-to-person transmission of COVID-19 reveals hidden super-spreading events during the early outbreak phase.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18836-4
- By:
- Publication type:
- Article
Identification of Hidden Population Structure in Time-Scaled Phylogenies.
- Published in:
- Systematic Biology, 2020, v. 69, n. 5, p. 884, doi. 10.1093/sysbio/syaa009
- By:
- Publication type:
- Article
Emerging phylogenetic structure of the SARS-CoV-2 pandemic.
- Published in:
- Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa082
- By:
- Publication type:
- Article
Rapid Detection of Mobilized Colistin Resistance using a Nucleic Acid Based Lab-on-a-Chip Diagnostic System.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-64612-1
- By:
- Publication type:
- Article
Genomic epidemiology of Vibrio cholerae reveals the regional and global spread of two epidemic non-toxigenic lineages.
- Published in:
- PLoS Neglected Tropical Diseases, 2020, v. 14, n. 2, p. 1, doi. 10.1371/journal.pntd.0008046
- By:
- Publication type:
- Article
Within-host evolution of Helicobacter pylori shaped by niche-specific adaptation, intragastric migrations and selective sweeps.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10050-1
- By:
- Publication type:
- Article
A dynamic power-law sexual network model of gonorrhoea outbreaks.
- Published in:
- PLoS Computational Biology, 2019, v. 15, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006748
- By:
- Publication type:
- Article
The Population Structure of Pseudomonas aeruginosa Is Characterized by Genetic Isolation of exoU+ and exoS+ Lineages.
- Published in:
- Genome Biology & Evolution, 2019, v. 11, n. 1, p. 1780, doi. 10.1093/gbe/evz119
- By:
- Publication type:
- Article
Bayesian inference of ancestral dates on bacterial phylogenetic trees.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. 22, p. e134, doi. 10.1093/nar/gky783
- By:
- Publication type:
- Article
Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07368-7
- By:
- Publication type:
- Article
Microevolution of Neisseria lactamica during nasopharyngeal colonisation induced by controlled human infection.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07235-5
- By:
- Publication type:
- Article
outbreaker2: a modular platform for outbreak reconstruction
- Published in:
- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2330-z
- By:
- Publication type:
- Article
Genomic Investigation of a Mycobacterium tuberculosis Outbreak Involving Prison and Community Cases in Florida, United States.
- Published in:
- American Journal of Tropical Medicine & Hygiene, 2018, v. 99, n. 4, p. 867, doi. 10.4269/ajtmh.17-0700
- By:
- Publication type:
- Article
Epidemiological Trends of Antibiotic Resistant Gonorrhoea in the United Kingdom.
- Published in:
- Antibiotics (2079-6382), 2018, v. 7, n. 3, p. 60, doi. 10.3390/antibiotics7030060
- By:
- Publication type:
- Article
Modeling the Growth and Decline of Pathogen Effective Population Size Provides Insight into Epidemic Dynamics and Drivers of Antimicrobial Resistance.
- Published in:
- Systematic Biology, 2018, v. 67, n. 4, p. 719, doi. 10.1093/sysbio/syy007
- By:
- Publication type:
- Article
The global distribution and spread of the mobilized colistin resistance gene mcr-1.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03205-z
- By:
- Publication type:
- Article
Correction to: <italic>Neisseria lactamica</italic> Y92–1009 complete genome sequence.
- Published in:
- 2018
- By:
- Publication type:
- Correction Notice
A phylogenetic method to perform genome-wide association studies in microbes that accounts for population structure and recombination.
- Published in:
- PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005958
- By:
- Publication type:
- Article
Estimating the fitness cost and benefit of cefixime resistance in Neisseria gonorrhoeae to inform prescription policy: A modelling study.
- Published in:
- 2017
- By:
- Publication type:
- journal article
Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination.
- Published in:
- Molecular Biology & Evolution, 2017, v. 34, n. 10, p. 2537, doi. 10.1093/molbev/msx173
- By:
- Publication type:
- Article
Local genes for local bacteria: Evidence of allopatry in the genomes of transatlantic Campylobacter populations.
- Published in:
- Molecular Ecology, 2017, v. 26, n. 17, p. 4497, doi. 10.1111/mec.14176
- By:
- Publication type:
- Article
Neisseria lactamica Y92-1009 complete genome sequence.
- Published in:
- Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0250-6
- By:
- Publication type:
- Article
Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks.
- Published in:
- PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005495
- By:
- Publication type:
- Article
Re-emergence of methicillin susceptibility in a resistant lineage of Staphylococcus aureus.
- Published in:
- 2017
- By:
- Publication type:
- journal article
Evolution and Transmission of Carbapenem-Resistant Klebsiella pneumoniae Expressing the bla<sub>OXA-232</sub> Gene During an Institutional Outbreak Associated With Endoscopic Retrograde Cholangiopancreatography.
- Published in:
- Clinical Infectious Diseases, 2017, v. 64, n. 7, p. 894, doi. 10.1093/cid/ciw876
- By:
- Publication type:
- Article
Genomic Infectious Disease Epidemiology in Partially Sampled and Ongoing Outbreaks.
- Published in:
- Molecular Biology & Evolution, 2017, v. 34, n. 4, p. 997, doi. 10.1093/molbev/msw275
- By:
- Publication type:
- Article
Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.
- Published in:
- Molecular Biology & Evolution, 2017, v. 34, n. 1, p. 185, doi. 10.1093/molbev/msw217
- By:
- Publication type:
- Article
Dynamics of genome change among Legionella species.
- Published in:
- Scientific Reports, 2016, p. 33442, doi. 10.1038/srep33442
- By:
- Publication type:
- Article
Bayesian Inference of the Evolution of a Phenotype Distribution on a Phylogenetic Tree.
- Published in:
- Genetics, 2016, v. 204, n. 1, p. 89, doi. 10.1534/genetics.116.190496
- By:
- Publication type:
- Article
Impact of HIV co-infection on the evolution and transmission of multidrug-resistant tuberculosis.
- Published in:
- eLife, 2016, p. 1, doi. 10.7554/eLife.16644
- By:
- Publication type:
- Article