Works by DiFazio, Stephen P

Results: 45
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    A willow sex chromosome reveals convergent evolution of complex palindromic repeats.

    Published in:
    Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-1952-4
    By:
    • Zhou, Ran;
    • Macaya-Sanz, David;
    • Carlson, Craig H.;
    • Schmutz, Jeremy;
    • Jenkins, Jerry W.;
    • Kudrna, David;
    • Sharma, Aditi;
    • Sandor, Laura;
    • Shu, Shengqiang;
    • Barry, Kerrie;
    • Tuskan, Gerald A.;
    • Ma, Tao;
    • Liu, Jianquan;
    • Olson, Matthew;
    • Smart, Lawrence B.;
    • DiFazio, Stephen P.
    Publication type:
    Article
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    Hybrids abounding.

    Published in:
    2004
    By:
    • Strauss, Steven H.;
    • DiFazio, Stephen P.
    Publication type:
    Book Review
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    Multitrait genome‐wide association analysis of Populus trichocarpa identifies key polymorphisms controlling morphological and physiological traits.

    Published in:
    New Phytologist, 2019, v. 223, n. 1, p. 293, doi. 10.1111/nph.15777
    By:
    • Chhetri, Hari B.;
    • Macaya‐Sanz, David;
    • Kainer, David;
    • Biswal, Ajaya K.;
    • Evans, Luke M.;
    • Chen, Jin‐Gui;
    • Collins, Cassandra;
    • Hunt, Kimberly;
    • Mohanty, Sushree S.;
    • Rosenstiel, Todd;
    • Ryno, David;
    • Winkeler, Kim;
    • Yang, Xiaohan;
    • Jacobson, Daniel;
    • Mohnen, Debra;
    • Muchero, Wellington;
    • Strauss, Steven H.;
    • Tschaplinski, Timothy J.;
    • Tuskan, Gerald A.;
    • DiFazio, Stephen P.
    Publication type:
    Article
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    A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation.

    Published in:
    Plant Journal, 2007, v. 50, n. 6, p. 1063, doi. 10.1111/j.1365-313X.2007.03112.x
    By:
    • Kelleher, Colin T.;
    • Chiu, Readman;
    • Shin, Heesun;
    • Bosdet, Ian E.;
    • Krzywinski, Martin I.;
    • Fjell, Chris D.;
    • Wilkin, Jennifer;
    • Yin, TongMing;
    • DiFazio, Stephen P.;
    • Ali, Johar;
    • Asano, Jennifer K.;
    • Chan, Susanna;
    • Cloutier, Alison;
    • Girn, Noreen;
    • Leach, Stephen;
    • Lee, Darlene;
    • Mathewson, Carrie A.;
    • Olson, Teika;
    • O'Connor, Katie;
    • Prabhu, Anna-Liisa
    Publication type:
    Article
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    5-Enolpyruvylshikimate 3-Phosphate Synthase Functions as a Transcriptional Repressor in Populus.

    Published in:
    Plant Cell, 2018, v. 30, n. 7, p. 1645, doi. 10.1105/tpc.18.00168
    By:
    • Xie, Meng;
    • Muchero, Wellington;
    • Bryan, Anthony C.;
    • Yee, Kelsey;
    • Guo, Hao-Bo;
    • Zhang, Jin;
    • Tschaplinski, Timothy J.;
    • Singan, Vasanth R.;
    • Lindquist, Erika;
    • Payyavula, Raja S.;
    • Barros-Rios, Jaime;
    • Dixon, Richard;
    • Engle, Nancy;
    • Sykes, Robert W.;
    • Davis, Mark;
    • Jawdy, Sara S.;
    • Gunter, Lee E.;
    • Thompson, Olivia;
    • DiFazio, Stephen P.;
    • Evans, Luke M.
    Publication type:
    Article
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    20

    Sexual dimorphism in the dioecious willow Salix purpurea.

    Published in:
    American Journal of Botany, 2021, v. 108, n. 8, p. 1374, doi. 10.1002/ajb2.1704
    By:
    • Gouker, Fred E.;
    • Carlson, Craig H.;
    • Zou, Junzhu;
    • Evans, Luke;
    • Crowell, Chase R.;
    • Smart, Christine D.;
    • DiFazio, Stephen P.;
    • Smart, Lawrence B.
    Publication type:
    Article
    21
    22

    A General Model to Explain Repeated Turnovers of Sex Determination in the Salicaceae.

    Published in:
    Molecular Biology & Evolution, 2021, v. 38, n. 3, p. 968, doi. 10.1093/molbev/msaa261
    By:
    • Yang, Wenlu;
    • Wang, Deyan;
    • Li, Yiling;
    • Zhang, Zhiyang;
    • Tong, Shaofei;
    • Li, Mengmeng;
    • Zhang, Xu;
    • Zhang, Lei;
    • Ren, Liwen;
    • Ma, Xinzhi;
    • Zhou, Ran;
    • Sanderson, Brian J;
    • Keefover-Ring, Ken;
    • Yin, Tongming;
    • Smart, Lawrence B;
    • Liu, Jianquan;
    • DiFazio, Stephen P;
    • Olson, Matthew;
    • Ma, Tao
    Publication type:
    Article
    23

    A framework for community and ecosystem genetics: from genes to ecosystems.

    Published in:
    Nature Reviews Genetics, 2006, v. 7, n. 7, p. 510, doi. 10.1038/nrg1877
    By:
    • Whitham, Thomas G.;
    • Bailey, Joseph K.;
    • Schweitzer, Jennifer A.;
    • Shuster, Stephen M.;
    • Bangert, Randy K.;
    • LeRoy, Carri J.;
    • Lonsdorf, Eric V.;
    • Allan, Gery J.;
    • DiFazio, Stephen P.;
    • Potts, Brad M.;
    • Fischer, Dylan G.;
    • Gehring, Catherine A.;
    • Lindroth, Richard L.;
    • Marks, Jane C.;
    • Hart, Stephen C.;
    • Wimp, Gina M.;
    • Wooley, Stuart C.
    Publication type:
    Article
    24

    Genome-wide association mapping for wood characteristics in Populus identifies an array of candidate single nucleotide polymorphisms.

    Published in:
    New Phytologist, 2013, v. 200, n. 3, p. 710, doi. 10.1111/nph.12422
    By:
    • Porth, Ilga;
    • Klapšte, Jaroslav;
    • Skyba, Oleksandr;
    • Hannemann, Jan;
    • McKown, Athena D.;
    • Guy, Robert D.;
    • DiFazio, Stephen P.;
    • Muchero, Wellington;
    • Ranjan, Priya;
    • Tuskan, Gerald A.;
    • Friedmann, Michael C.;
    • Ehlting, Juergen;
    • Cronk, Quentin C. B.;
    • El‐Kassaby, Yousry A.;
    • Douglas, Carl J.;
    • Mansfield, Shawn D.
    Publication type:
    Article
    25

    Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa.

    Published in:
    New Phytologist, 2012, v. 196, n. 3, p. 713, doi. 10.1111/j.1469-8137.2012.04258.x
    By:
    • Slavov, Gancho T.;
    • DiFazio, Stephen P.;
    • Martin, Joel;
    • Schackwitz, Wendy;
    • Muchero, Wellington;
    • Rodgers-Melnick, Eli;
    • Lipphardt, Mindie F.;
    • Pennacchio, Christa P.;
    • Hellsten, Uffe;
    • Pennacchio, Len A.;
    • Gunter, Lee E.;
    • Ranjan, Priya;
    • Vining, Kelly;
    • Pomraning, Kyle R.;
    • Wilhelm, Larry J.;
    • Pellegrini, Matteo;
    • Mockler, Todd C.;
    • Freitag, Michael;
    • Geraldes, Armando;
    • El-Kassaby, Yousry A.
    Publication type:
    Article
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    Evolution of a ZW sex chromosome system in willows.

    Published in:
    Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42880-5
    By:
    • Hu, Nan;
    • Sanderson, Brian J.;
    • Guo, Minghao;
    • Feng, Guanqiao;
    • Gambhir, Diksha;
    • Hale, Haley;
    • Wang, Deyan;
    • Hyden, Brennan;
    • Liu, Jianquan;
    • Smart, Lawrence B.;
    • DiFazio, Stephen P.;
    • Ma, Tao;
    • Olson, Matthew S.
    Publication type:
    Article
    30

    Evolution of a ZW sex chromosome system in willows.

    Published in:
    Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42880-5
    By:
    • Hu, Nan;
    • Sanderson, Brian J.;
    • Guo, Minghao;
    • Feng, Guanqiao;
    • Gambhir, Diksha;
    • Hale, Haley;
    • Wang, Deyan;
    • Hyden, Brennan;
    • Liu, Jianquan;
    • Smart, Lawrence B.;
    • DiFazio, Stephen P.;
    • Ma, Tao;
    • Olson, Matthew S.
    Publication type:
    Article
    31

    Repeated turnovers keep sex chromosomes young in willows.

    Published in:
    Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02769-w
    By:
    • Wang, Deyan;
    • Li, Yiling;
    • Li, Mengmeng;
    • Yang, Wenlu;
    • Ma, Xinzhi;
    • Zhang, Lei;
    • Wang, Yubo;
    • Feng, Yanlin;
    • Zhang, Yuanyuan;
    • Zhou, Ran;
    • Sanderson, Brian J.;
    • Keefover-Ring, Ken;
    • Yin, Tongming;
    • Smart, Lawrence B.;
    • DiFazio, Stephen P.;
    • Liu, Jianquan;
    • Olson, Matthew;
    • Ma, Tao
    Publication type:
    Article
    32

    High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus.

    Published in:
    BMC Genomics, 2015, v. 16, n. 1, p. 555, doi. 10.1186/s12864-015-1215-z
    By:
    • Muchero, Wellington;
    • Jianjun Guo;
    • DiFazio, Stephen P.;
    • Jin-Gui Chen;
    • Ranjan, Priya;
    • Slavov, Gancho T.;
    • Gunter, Lee E.;
    • Jawdy, Sara;
    • Bryan, Anthony C.;
    • Sykes, Robert;
    • Ziebell, Angela;
    • Klápštĕ, Jaroslav;
    • Porth, Ilga;
    • Skyba, Oleksandr;
    • Unda, Faride;
    • El-Kassaby, Yousry A.;
    • Douglas, Carl J.;
    • Mansfield, Shawn D.;
    • Martin, Joel;
    • Schackwitz, Wendy
    Publication type:
    Article
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    Phylogenomics reveals patterns of ancient hybridization and differential diversification that contribute to phylogenetic conflict in willows, poplars, and close relatives.

    Published in:
    Systematic Biology, 2023, v. 72, n. 6, p. 1220, doi. 10.1093/sysbio/syad042
    By:
    • Sanderson, Brian J;
    • Gambhir, Diksha;
    • Feng, Guanqiao;
    • Hu, Nan;
    • Cronk, Quentin C;
    • Percy, Diana M;
    • Freaner, Francisco Molina;
    • Johnson, Matthew G;
    • Smart, Lawrence B;
    • Keefover-Ring, Ken;
    • Yin, Tongming;
    • Ma, Tao;
    • DiFazio, Stephen P;
    • Liu, Jianquan;
    • Olson, Matthew S
    Publication type:
    Article
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    Poplar Genomics: State of the Science.

    Published in:
    Critical Reviews in Plant Sciences, 2009, v. 28, n. 5, p. 285, doi. 10.1080/07352680903241014
    By:
    • Xiaohan Yang;
    • Kalluri, Udaya C.;
    • DiFazio, Stephen P.;
    • Wullschleger, Stan D.;
    • Tschaplinski, Timothy J.;
    • Zong-Ming Cheng;
    • Tuskan, Gerald A.
    Publication type:
    Article
    45

    Agronomic performance of Populus deltoides trees engineered for biofuel production.

    Published in:
    Biotechnology for Biofuels, 2017, v. 10, p. 1, doi. 10.1186/s13068-017-0934-6
    By:
    • Macaya-Sanz, David;
    • Jin-Gui Chen;
    • Kalluri, Udaya C.;
    • Muchero, Wellington;
    • Tschaplinski, Timothy J.;
    • Gunter, Lee E.;
    • Simon, Sandra J.;
    • Biswal, Ajaya K.;
    • Bryan, Anthony C.;
    • Payyavula, Raja;
    • Meng Xie;
    • Yongil Yang;
    • Jin Zhang;
    • Mohnen, Debra;
    • Tuskan, Gerald A.;
    • DiFazio, Stephen P.
    Publication type:
    Article