Works by Derrien, Thomas

Results: 31

Prognostic value of somatic focal amplifications on chromosome 30 in canine oral melanoma.
Published in:
Veterinary & Comparative Oncology, 2020, v. 18, n. 2, p. 214, doi. 10.1111/vco.12536
By:
- Prouteau, Anais;
- Chocteau, Florian;
- Brito, Clotilde;
- Cadieu, Edouard;
- Primot, Aline;
- Botherel, Nadine;
- Degorce, Frédérique;
- Cornevin, Laurence;
- Lagadic, Marie A.;
- Cabillic, Florian;
- Fornel‐Thibaud, Pauline;
- Devauchelle, Patrick;
- Derrien, Thomas;
- Abadie, Jerome;
- André, Catherine;
- Hédan, Benoît
Publication type:
Article
Analysis of the Unassembled Part of the Dog Genome Sequence: Chromosomal Localization of 115 Genes Inferred from Multispecies Comparative Genomics.
Published in:
Journal of Heredity, 2007, v. 98, n. 5, p. 461, doi. 10.1093/jhered/esm027
By:
- Derrien, Thomas;
- André, Catherine;
- Galibert, Francis;
- Hitte, Christophe
Publication type:
Article
Analysis of the Unassembled Part of the Dog Genome Sequence: Chromosomal Localization of 115 Genes Inferred from Multispecies Comparative Genomics.
Published in:
Journal of Heredity, 2007, v. 98, n. 5, p. 461, doi. 10.1093/jhered/esm027
By:
- Derrien, Thomas;
- André, Catherine;
- Galibert, Francis;
- Hitte, Christophe
Publication type:
Article
Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species.
Published in:
Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-016-1145-3
By:
- Mathers, Thomas C.;
- Yazhou Chen;
- Kaithakottil, Gemy;
- Legeai, Fabrice;
- Mugford, Sam T.;
- Baa-Puyoulet, Patrice;
- Bretaudeau, Anthony;
- Clavijo, Bernardo;
- Colella, Stefano;
- Collin, Olivier;
- Dalmay, Tamas;
- Derrien, Thomas;
- Feng, Honglin;
- Gabaldön, Toni;
- Jordan, Anna;
- Julca, Irene;
- Kettles, Graeme J.;
- Kowitwanich, Krissana;
- Lavenier, Dominique;
- Lenzi, Paolo
Publication type:
Article
Assessment of transcript reconstruction methods for RNA-seq.
Published in:
Nature Methods, 2013, v. 10, n. 12, p. 1177, doi. 10.1038/nmeth.2714
By:
- Steijger, Tamara;
- Abril, Josep F;
- Engström, Pär G;
- Kokocinski, Felix;
- Akerman, Martin;
- Alioto, Tyler;
- Ambrosini, Giovanna;
- Antonarakis, Stylianos E;
- Behr, Jonas;
- Bertone, Paul;
- Bohnert, Regina;
- Bucher, Philipp;
- Cloonan, Nicole;
- Derrien, Thomas;
- Djebali, Sarah;
- Du, Jiang;
- Dudoit, Sandrine;
- Gerstein, Mark;
- Gingeras, Thomas R;
- Gonzalez, David
Publication type:
Article
Long noncoding RNA repertoire in chicken liver and adipose tissue.
Published in:
Genetics Selection Evolution, 2017, v. 49, p. 1, doi. 10.1186/s12711-016-0275-0
By:
- Muret, Kévin;
- Klopp, Christophe;
- Wucher, Valentin;
- Esquerré, Diane;
- Legeai, Fabrice;
- Lecerf, Frédéric;
- Désert, Colette;
- Boutin, Morgane;
- Jehl, Frédéric;
- Acloque, Hervé;
- Giuffra, Elisabetta;
- Djebali, Sarah;
- Foissac, Sylvain;
- Derrien, Thomas;
- Lagarrigue, Sandrine
Publication type:
Article
Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus.
Published in:
New Phytologist, 2017, v. 214, n. 1, p. 219, doi. 10.1111/nph.14321
By:
- Cormier, Alexandre;
- Avia, Komlan;
- Sterck, Lieven;
- Derrien, Thomas;
- Wucher, Valentin;
- Andres, Gwendoline;
- Monsoor, Misharl;
- Godfroy, Olivier;
- Lipinska, Agnieszka;
- Perrineau, Marie‐Mathilde;
- Van De Peer, Yves;
- Hitte, Christophe;
- Corre, Erwan;
- Coelho, Susana M.;
- Cock, J. Mark
Publication type:
Article
Facilitating genome navigation: survey sequencing and dense radiation-hybrid gene mapping.
Published in:
2005
By:
- Hitte, Christophe;
- Madeoy, Jennifer;
- Kirkness, Ewen F.;
- Priat, Catherine;
- Lorentzen, Travis D.;
- Senger, Fabrice;
- Thomas, Dan;
- Derrien, Thomas;
- Ramirez, Christina;
- Scott, Carol;
- Evanno, Gwenaelle;
- Pullar, Barbara;
- Cadieu, Edouard;
- Oza, Vinay;
- Lourgant, Kristelle;
- Jaffe, David B.;
- Tacher, Sandrine;
- Dréano, Stéphane;
- Berkova, Nadia;
- André, Catherine
Publication type:
research
Genome-Wide Analysis of Long Non-Coding RNA Profiles in Canine Oral Melanomas.
Published in:
Genes, 2019, v. 10, n. 6, p. 477, doi. 10.3390/genes10060477
By:
- Hitte, Christophe;
- Le Béguec, Céline;
- Cadieu, Edouard;
- Wucher, Valentin;
- Primot, Aline;
- Prouteau, Anaïs;
- Botherel, Nadine;
- Hédan, Benoît;
- Lindblad-Toh, Kerstin;
- André, Catherine;
- Derrien, Thomas
Publication type:
Article
Identification of a Missense Variant in MFSD12 Involved in Dilution of Phaeomelanin Leading to White or Cream Coat Color in Dogs.
Published in:
Genes, 2019, v. 10, n. 5, p. 386, doi. 10.3390/genes10050386
By:
- Hédan, Benoit;
- Cadieu, Edouard;
- Botherel, Nadine;
- Dufaure de Citres, Caroline;
- Letko, Anna;
- Rimbault, Maud;
- Drögemüller, Cord;
- Jagannathan, Vidhya;
- Derrien, Thomas;
- Schmutz, Sheila;
- Leeb, Tosso;
- André, Catherine
Publication type:
Article
Dynamic DNA material with emergent locomotion behavior powered by artificial metabolism.
Published in:
Science Robotics, 2019, v. 4, n. 29, p. 1, doi. 10.1126/scirobotics.aaw3512
By:
- Hamada, Shogo;
- Yancey, Kenneth Gene;
- Pardo, Yehudah;
- Gan, Mingzhe;
- Vanatta, Max;
- An, Duo;
- Hu, Yue;
- Derrien, Thomas L.;
- Ruiz, Roanna;
- Liu, Peifeng;
- Sabin, Jenny;
- Luo, Dan
Publication type:
Article
Revisiting the missing protein-coding gene catalog of the domestic dog.
Published in:
BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-62
By:
- Derrien, Thomas;
- Thézé, Julien;
- Vaysse, Amaury;
- André, Catherine;
- Ostrander, Elaine A.;
- Galibert, Francis;
- Hitte, Christophe
Publication type:
Article
Multi-species annotation of transcriptome and chromatin structure in domesticated animals.
Published in:
BMC Biology, 2019, v. 17, n. 1, p. 1, doi. 10.1186/s12915-019-0726-5
By:
- Foissac, Sylvain;
- Djebali, Sarah;
- Munyard, Kylie;
- Vialaneix, Nathalie;
- Rau, Andrea;
- Muret, Kevin;
- Esquerré, Diane;
- Zytnicki, Matthias;
- Derrien, Thomas;
- Bardou, Philippe;
- Blanc, Fany;
- Cabau, Cédric;
- Crisci, Elisa;
- Dhorne-Pollet, Sophie;
- Drouet, Françoise;
- Faraut, Thomas;
- Gonzalez, Ignacio;
- Goubil, Adeline;
- Lacroix-Lamandé, Sonia;
- Laurent, Fabrice
Publication type:
Article
Identification of Genomic Regions Associated with Phenotypic Variation between Dog Breeds using Selection Mapping.
Published in:
PLoS Genetics, 2011, v. 7, n. 10, p. 1, doi. 10.1371/journal.pgen.1002316
By:
- Vaysse, Amaury;
- Ratnakumar, Abhirami;
- Derrien, Thomas;
- Axelsson, Erik;
- Pielberg, Gerli Rosengren;
- Sigurdsson, Snaevar;
- Fall, Tove;
- Seppälä, Eija H.;
- Hansen, Mark S. T.;
- Lawley, Cindy T.;
- Karlsson, Elinor K.;
- Bannasch, Danika;
- Vilà, Carles;
- Lohi, Hannes;
- Galibert, Francis;
- Fredholm, Merete;
- Häggström, Jens;
- Hedhammar, Åke;
- André, Catherine;
- Lindblad-Toh, Kerstin
Publication type:
Article
Improved canine exome designs, featuring ncRNAs and increased coverage of protein coding genes.
Published in:
Scientific Reports, 2015, p. 12810, doi. 10.1038/srep12810
By:
- Broeckx, Bart J.G.;
- Hitte, Christophe;
- Coopman, Frank;
- Verhoeven, Geert E.C.;
- De Keulenaer, Sarah;
- De Meester, Ellen;
- Derrien, Thomas;
- Alfoldi, Jessica;
- Lindblad-Toh, Kerstin;
- Bosmans, Tim;
- Gielen, Ingrid;
- Van Bree, Henri;
- Van Ryssen, Bernadette;
- Saunders, Jimmy H.;
- Van Nieuwerburgh, Filip;
- Deforce, Dieter
Publication type:
Article
A Point Mutation in a lincRNA Upstream of GDNF Is Associated to a Canine Insensitivity to Pain: A Spontaneous Model for Human Sensory Neuropathies.
Published in:
PLoS Genetics, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pgen.1006482
By:
- Plassais, Jocelyn;
- Lagoutte, Laetitia;
- Correard, Solenne;
- Paradis, Manon;
- Guaguère, Eric;
- Hédan, Benoit;
- Pommier, Alix;
- Botherel, Nadine;
- Cadiergues, Marie-Christine;
- Pilorge, Philippe;
- Silversides, David;
- Bizot, Maud;
- Samuels, Mark;
- Arnan, Carme;
- Johnson, Rory;
- Hitte, Christophe;
- Salbert, Gilles;
- Méreau, Agnès;
- Quignon, Pascale;
- Derrien, Thomas
Publication type:
Article
Characterisation and functional predictions of canine long non-coding RNAs.
Published in:
Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-31770-2
By:
- Le Béguec, Céline;
- Wucher, Valentin;
- Lagoutte, Lætitia;
- Cadieu, Edouard;
- Botherel, Nadine;
- Hédan, Benoît;
- De Brito, Clotilde;
- Guillory, Anne-Sophie;
- André, Catherine;
- Derrien, Thomas;
- Hitte, Christophe
Publication type:
Article
Identification of common predisposing loci to hematopoietic cancers in four dog breeds.
Published in:
PLoS Genetics, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pgen.1009395
By:
- Hédan, Benoît;
- Cadieu, Édouard;
- Rimbault, Maud;
- Vaysse, Amaury;
- Dufaure de Citres, Caroline;
- Devauchelle, Patrick;
- Botherel, Nadine;
- Abadie, Jérôme;
- Quignon, Pascale;
- Derrien, Thomas;
- André, Catherine
Publication type:
Article
The Origins, Evolution, and Functional Potential of Alternative Splicing in Vertebrates.
Published in:
Molecular Biology & Evolution, 2011, v. 28, n. 10, p. 2949, doi. 10.1093/molbev/msr127
By:
- Mudge, Jonathan M.;
- Frankish, Adam;
- Fernandez-Banet, Julio;
- Alioto, Tyler;
- Derrien, Thomas;
- Howald, Cédric;
- Reymond, Alexandre;
- Guigó, Roderic;
- Hubbard, Tim;
- Harrow, Jennifer
Publication type:
Article
CRH_Server: an online comparative and radiation hybrid mapping server for the canine genome.
Published in:
Bioinformatics, 2004, v. 20, n. 18, p. 3665
By:
- Hitte, Christophe;
- Derrien, Thomas;
- André, Catherine;
- Ostrander, Elaine A.;
- Galibert, Francis
Publication type:
Article
Canine Oral Melanoma Genomic and Transcriptomic Study Defines Two Molecular Subgroups with Different Therapeutical Targets.
Published in:
Cancers, 2022, v. 14, n. 2, p. 276, doi. 10.3390/cancers14020276
By:
- Prouteau, Anais;
- Mottier, Stephanie;
- Primot, Aline;
- Cadieu, Edouard;
- Bachelot, Laura;
- Botherel, Nadine;
- Cabillic, Florian;
- Houel, Armel;
- Cornevin, Laurence;
- Kergal, Camille;
- Corre, Sébastien;
- Abadie, Jérôme;
- Hitte, Christophe;
- Gilot, David;
- Lindblad-Toh, Kerstin;
- André, Catherine;
- Derrien, Thomas;
- Hedan, Benoit
Publication type:
Article
Crystallization of DNA-Capped Gold Nanoparticles in High-Concentration, Divalent Salt Environments.
Published in:
Angewandte Chemie, 2014, v. 126, n. 5, p. 1340, doi. 10.1002/ange.201307113
By:
- Tan, Shawn J.;
- Kahn, Jason S.;
- Derrien, Thomas L.;
- Campolongo, Michael J.;
- Zhao, Mervin;
- Smilgies, Detlef ‐ M.;
- Luo, Dan
Publication type:
Article
LncRNAs in domesticated animals: from dog to livestock species.
Published in:
Mammalian Genome, 2022, v. 33, n. 2, p. 248, doi. 10.1007/s00335-021-09928-7
By:
- Lagarrigue, Sandrine;
- Lorthiois, Matthias;
- Degalez, Fabien;
- Gilot, David;
- Derrien, Thomas
Publication type:
Article
Annotation of the domestic dog genome sequence: finding the missing genes.
Published in:
Mammalian Genome, 2012, v. 23, n. 1/2, p. 124, doi. 10.1007/s00335-011-9372-0
By:
- Derrien, Thomas;
- Vaysse, Amaury;
- André, Catherine;
- Hitte, Christophe
Publication type:
Article
Author Correction: An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues.
Published in:
2021
By:
- Jehl, Frédéric;
- Muret, Kévin;
- Bernard, Maria;
- Boutin, Morgane;
- Lagoutte, Laetitia;
- Désert, Colette;
- Dehais, Patrice;
- Esquerré, Diane;
- Acloque, Hervé;
- Giuffra, Elisabetta;
- Djebali, Sarah;
- Foissac, Sylvain;
- Derrien, Thomas;
- Pitel, Frédérique;
- Zerjal, Tatiana;
- Klopp, Christophe;
- Lagarrigue, Sandrine
Publication type:
Correction Notice
Circulating tumor DNA is detectable in canine histiocytic sarcoma, oral malignant melanoma, and multicentric lymphoma.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-020-80332-y
By:
- Prouteau, Anaïs;
- Denis, Jérôme Alexandre;
- De Fornel, Pauline;
- Cadieu, Edouard;
- Derrien, Thomas;
- Kergal, Camille;
- Botherel, Nadine;
- Ulvé, Ronan;
- Rault, Mélanie;
- Bouzidi, Amira;
- François, Romain;
- Dorso, Laetitia;
- Lespagnol, Alexandra;
- Devauchelle, Patrick;
- Abadie, Jérôme;
- André, Catherine;
- Hédan, Benoît
Publication type:
Article
An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-77586-x
By:
- Jehl, Frédéric;
- Muret, Kévin;
- Bernard, Maria;
- Boutin, Morgane;
- Lagoutte, Laetitia;
- Désert, Colette;
- Dehais, Patrice;
- Esquerré, Diane;
- Acloque, Hervé;
- Giuffra, Elisabetta;
- Djebali, Sarah;
- Foissac, Sylvain;
- Derrien, Thomas;
- Pitel, Frédérique;
- Zerjal, Tatiana;
- Klopp, Christophe;
- Lagarrigue, Sandrine
Publication type:
Article
PTPN11 mutations in canine and human disseminated histiocytic sarcoma.
Published in:
International Journal of Cancer, 2020, v. 147, n. 6, p. 1657, doi. 10.1002/ijc.32991
By:
- Hédan, Benoit;
- Rault, Mélanie;
- Abadie, Jérôme;
- Ulvé, Ronan;
- Botherel, Nadine;
- Devauchelle, Patrick;
- Copie‐Bergman, Christiane;
- Cadieu, Edouard;
- Parrens, Marie;
- Alten, Julia;
- Zalcman, Emmanuelle L.;
- Cario, Gunnar;
- Damaj, Gandhi;
- Mokhtari, Karima;
- Le Loarer, Francois;
- Coulomb‐Lhermine, Aurore;
- Derrien, Thomas;
- Hitte, Christophe;
- Bachelot, Laura;
- Breen, Matthew
Publication type:
Article
Coat colour in dogs: identification of the Merle locus in the Australian shepherd breed.
Published in:
BMC Veterinary Research, 2006, v. 2, p. 1
By:
- Hédan, Benoit;
- Corre, Sébastien;
- Hitte, Christophe;
- Dréano, Stéphane;
- Vilboux, Thierry;
- Derrien, Thomas;
- Denis, Bernard;
- Galibert, Francis;
- Galibert, Marie-Dominique;
- André, Catherine
Publication type:
Article
Fast Computation and Applications of Genome Mappability.
Published in:
PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0030377
By:
- Derrien, Thomas;
- Estellé, Jordi;
- Sola, Santiago Marco;
- Knowles, David G.;
- Raineri, Emanuele;
- Guigó, Roderic;
- Ribeca, Paolo
Publication type:
Article
Crystallization of DNA-Capped Gold Nanoparticles in High-Concentration, Divalent Salt Environments.
Published in:
Angewandte Chemie International Edition, 2014, v. 53, n. 5, p. 1316, doi. 10.1002/anie.201307113
By:
- Tan, Shawn J.;
- Kahn, Jason S.;
- Derrien, Thomas L.;
- Campolongo, Michael J.;
- Zhao, Mervin;
- Smilgies, Detlef‐M.;
- Luo, Dan
Publication type:
Article