Works matching AU Derrien, Thomas

Results: 31

Long noncoding RNA repertoire in chicken liver and adipose tissue.

Published in:

Genetics Selection Evolution, 2017, v. 49, p. 1, doi. 10.1186/s12711-016-0275-0

By:

Muret, Kévin;
Klopp, Christophe;
Wucher, Valentin;
Esquerré, Diane;
Legeai, Fabrice;
Lecerf, Frédéric;
Désert, Colette;
Boutin, Morgane;
Jehl, Frédéric;
Acloque, Hervé;
Giuffra, Elisabetta;
Djebali, Sarah;
Foissac, Sylvain;
Derrien, Thomas;
Lagarrigue, Sandrine

Publication type:

Article

Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus.

Published in:

New Phytologist, 2017, v. 214, n. 1, p. 219, doi. 10.1111/nph.14321

By:

Cormier, Alexandre;
Avia, Komlan;
Sterck, Lieven;
Derrien, Thomas;
Wucher, Valentin;
Andres, Gwendoline;
Monsoor, Misharl;
Godfroy, Olivier;
Lipinska, Agnieszka;
Perrineau, Marie‐Mathilde;
Van De Peer, Yves;
Hitte, Christophe;
Corre, Erwan;
Coelho, Susana M.;
Cock, J. Mark

Publication type:

Article

Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-016-1145-3

By:

Mathers, Thomas C.;
Yazhou Chen;
Kaithakottil, Gemy;
Legeai, Fabrice;
Mugford, Sam T.;
Baa-Puyoulet, Patrice;
Bretaudeau, Anthony;
Clavijo, Bernardo;
Colella, Stefano;
Collin, Olivier;
Dalmay, Tamas;
Derrien, Thomas;
Feng, Honglin;
Gabaldön, Toni;
Jordan, Anna;
Julca, Irene;
Kettles, Graeme J.;
Kowitwanich, Krissana;
Lavenier, Dominique;
Lenzi, Paolo

Publication type:

Article

Identification of Genomic Regions Associated with Phenotypic Variation between Dog Breeds using Selection Mapping.

Published in:

PLoS Genetics, 2011, v. 7, n. 10, p. 1, doi. 10.1371/journal.pgen.1002316

By:

Vaysse, Amaury;
Ratnakumar, Abhirami;
Derrien, Thomas;
Axelsson, Erik;
Pielberg, Gerli Rosengren;
Sigurdsson, Snaevar;
Fall, Tove;
Seppälä, Eija H.;
Hansen, Mark S. T.;
Lawley, Cindy T.;
Karlsson, Elinor K.;
Bannasch, Danika;
Vilà, Carles;
Lohi, Hannes;
Galibert, Francis;
Fredholm, Merete;
Häggström, Jens;
Hedhammar, Åke;
André, Catherine;
Lindblad-Toh, Kerstin

Publication type:

Article

CRH_Server: an online comparative and radiation hybrid mapping server for the canine genome.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3665

By:

Hitte, Christophe;
Derrien, Thomas;
André, Catherine;
Ostrander, Elaine A.;
Galibert, Francis

Publication type:

Article

Genome-Wide Analysis of Long Non-Coding RNA Profiles in Canine Oral Melanomas.

Published in:

Genes, 2019, v. 10, n. 6, p. 477, doi. 10.3390/genes10060477

By:

Hitte, Christophe;
Le Béguec, Céline;
Cadieu, Edouard;
Wucher, Valentin;
Primot, Aline;
Prouteau, Anaïs;
Botherel, Nadine;
Hédan, Benoît;
Lindblad-Toh, Kerstin;
André, Catherine;
Derrien, Thomas

Publication type:

Article

Identification of a Missense Variant in MFSD12 Involved in Dilution of Phaeomelanin Leading to White or Cream Coat Color in Dogs.

Published in:

Genes, 2019, v. 10, n. 5, p. 386, doi. 10.3390/genes10050386

By:

Hédan, Benoit;
Cadieu, Edouard;
Botherel, Nadine;
Dufaure de Citres, Caroline;
Letko, Anna;
Rimbault, Maud;
Drögemüller, Cord;
Jagannathan, Vidhya;
Derrien, Thomas;
Schmutz, Sheila;
Leeb, Tosso;
André, Catherine

Publication type:

Article

Coat colour in dogs: identification of the Merle locus in the Australian shepherd breed.

Published in:

BMC Veterinary Research, 2006, v. 2, p. 1

By:

Hédan, Benoit;
Corre, Sébastien;
Hitte, Christophe;
Dréano, Stéphane;
Vilboux, Thierry;
Derrien, Thomas;
Denis, Bernard;
Galibert, Francis;
Galibert, Marie-Dominique;
André, Catherine

Publication type:

Article

A Point Mutation in a lincRNA Upstream of GDNF Is Associated to a Canine Insensitivity to Pain: A Spontaneous Model for Human Sensory Neuropathies.

Published in:

PLoS Genetics, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pgen.1006482

By:

Plassais, Jocelyn;
Lagoutte, Laetitia;
Correard, Solenne;
Paradis, Manon;
Guaguère, Eric;
Hédan, Benoit;
Pommier, Alix;
Botherel, Nadine;
Cadiergues, Marie-Christine;
Pilorge, Philippe;
Silversides, David;
Bizot, Maud;
Samuels, Mark;
Arnan, Carme;
Johnson, Rory;
Hitte, Christophe;
Salbert, Gilles;
Méreau, Agnès;
Quignon, Pascale;
Derrien, Thomas

Publication type:

Article

The Origins, Evolution, and Functional Potential of Alternative Splicing in Vertebrates.

Published in:

Molecular Biology & Evolution, 2011, v. 28, n. 10, p. 2949, doi. 10.1093/molbev/msr127

By:

Mudge, Jonathan M.;
Frankish, Adam;
Fernandez-Banet, Julio;
Alioto, Tyler;
Derrien, Thomas;
Howald, Cédric;
Reymond, Alexandre;
Guigó, Roderic;
Hubbard, Tim;
Harrow, Jennifer

Publication type:

Article

Prognostic value of somatic focal amplifications on chromosome 30 in canine oral melanoma.

Published in:

Veterinary & Comparative Oncology, 2020, v. 18, n. 2, p. 214, doi. 10.1111/vco.12536

By:

Prouteau, Anais;
Chocteau, Florian;
Brito, Clotilde;
Cadieu, Edouard;
Primot, Aline;
Botherel, Nadine;
Degorce, Frédérique;
Cornevin, Laurence;
Lagadic, Marie A.;
Cabillic, Florian;
Fornel‐Thibaud, Pauline;
Devauchelle, Patrick;
Derrien, Thomas;
Abadie, Jerome;
André, Catherine;
Hédan, Benoît

Publication type:

Article

Facilitating genome navigation: survey sequencing and dense radiation-hybrid gene mapping.

Published in:

2005

By:

Hitte, Christophe;
Madeoy, Jennifer;
Kirkness, Ewen F.;
Priat, Catherine;
Lorentzen, Travis D.;
Senger, Fabrice;
Thomas, Dan;
Derrien, Thomas;
Ramirez, Christina;
Scott, Carol;
Evanno, Gwenaelle;
Pullar, Barbara;
Cadieu, Edouard;
Oza, Vinay;
Lourgant, Kristelle;
Jaffe, David B.;
Tacher, Sandrine;
Dréano, Stéphane;
Berkova, Nadia;
André, Catherine

Publication type:

research

Multi-species annotation of transcriptome and chromatin structure in domesticated animals.

Published in:

BMC Biology, 2019, v. 17, n. 1, p. 1, doi. 10.1186/s12915-019-0726-5

By:

Foissac, Sylvain;
Djebali, Sarah;
Munyard, Kylie;
Vialaneix, Nathalie;
Rau, Andrea;
Muret, Kevin;
Esquerré, Diane;
Zytnicki, Matthias;
Derrien, Thomas;
Bardou, Philippe;
Blanc, Fany;
Cabau, Cédric;
Crisci, Elisa;
Dhorne-Pollet, Sophie;
Drouet, Françoise;
Faraut, Thomas;
Gonzalez, Ignacio;
Goubil, Adeline;
Lacroix-Lamandé, Sonia;
Laurent, Fabrice

Publication type:

Article

Characterisation and functional predictions of canine long non-coding RNAs.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-31770-2

By:

Le Béguec, Céline;
Wucher, Valentin;
Lagoutte, Lætitia;
Cadieu, Edouard;
Botherel, Nadine;
Hédan, Benoît;
De Brito, Clotilde;
Guillory, Anne-Sophie;
André, Catherine;
Derrien, Thomas;
Hitte, Christophe

Publication type:

Article

Crystallization of DNA-Capped Gold Nanoparticles in High-Concentration, Divalent Salt Environments.

Published in:

Angewandte Chemie, 2014, v. 126, n. 5, p. 1340, doi. 10.1002/ange.201307113

By:

Tan, Shawn J.;
Kahn, Jason S.;
Derrien, Thomas L.;
Campolongo, Michael J.;
Zhao, Mervin;
Smilgies, Detlef ‐ M.;
Luo, Dan

Publication type:

Article

Canine Oral Melanoma Genomic and Transcriptomic Study Defines Two Molecular Subgroups with Different Therapeutical Targets.

Published in:

Cancers, 2022, v. 14, n. 2, p. 276, doi. 10.3390/cancers14020276

By:

Prouteau, Anais;
Mottier, Stephanie;
Primot, Aline;
Cadieu, Edouard;
Bachelot, Laura;
Botherel, Nadine;
Cabillic, Florian;
Houel, Armel;
Cornevin, Laurence;
Kergal, Camille;
Corre, Sébastien;
Abadie, Jérôme;
Hitte, Christophe;
Gilot, David;
Lindblad-Toh, Kerstin;
André, Catherine;
Derrien, Thomas;
Hedan, Benoit

Publication type:

Article

Assessment of transcript reconstruction methods for RNA-seq.

Published in:

Nature Methods, 2013, v. 10, n. 12, p. 1177, doi. 10.1038/nmeth.2714

By:

Steijger, Tamara;
Abril, Josep F;
Engström, Pär G;
Kokocinski, Felix;
Akerman, Martin;
Alioto, Tyler;
Ambrosini, Giovanna;
Antonarakis, Stylianos E;
Behr, Jonas;
Bertone, Paul;
Bohnert, Regina;
Bucher, Philipp;
Cloonan, Nicole;
Derrien, Thomas;
Djebali, Sarah;
Du, Jiang;
Dudoit, Sandrine;
Gerstein, Mark;
Gingeras, Thomas R;
Gonzalez, David

Publication type:

Article

Identification of common predisposing loci to hematopoietic cancers in four dog breeds.

Published in:

PLoS Genetics, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pgen.1009395

By:

Hédan, Benoît;
Cadieu, Édouard;
Rimbault, Maud;
Vaysse, Amaury;
Dufaure de Citres, Caroline;
Devauchelle, Patrick;
Botherel, Nadine;
Abadie, Jérôme;
Quignon, Pascale;
Derrien, Thomas;
André, Catherine

Publication type:

Article

Dynamic DNA material with emergent locomotion behavior powered by artificial metabolism.

Published in:

Science Robotics, 2019, v. 4, n. 29, p. 1, doi. 10.1126/scirobotics.aaw3512

By:

Hamada, Shogo;
Yancey, Kenneth Gene;
Pardo, Yehudah;
Gan, Mingzhe;
Vanatta, Max;
An, Duo;
Hu, Yue;
Derrien, Thomas L.;
Ruiz, Roanna;
Liu, Peifeng;
Sabin, Jenny;
Luo, Dan

Publication type:

Article

Analysis of the Unassembled Part of the Dog Genome Sequence: Chromosomal Localization of 115 Genes Inferred from Multispecies Comparative Genomics.

Published in:

Journal of Heredity, 2007, v. 98, n. 5, p. 461, doi. 10.1093/jhered/esm027

By:

Derrien, Thomas;
André, Catherine;
Galibert, Francis;
Hitte, Christophe

Publication type:

Article

Analysis of the Unassembled Part of the Dog Genome Sequence: Chromosomal Localization of 115 Genes Inferred from Multispecies Comparative Genomics.

Published in:

Journal of Heredity, 2007, v. 98, n. 5, p. 461, doi. 10.1093/jhered/esm027

By:

Derrien, Thomas;
André, Catherine;
Galibert, Francis;
Hitte, Christophe

Publication type:

Article

Author Correction: An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues.

Published in:

2021

By:

Jehl, Frédéric;
Muret, Kévin;
Bernard, Maria;
Boutin, Morgane;
Lagoutte, Laetitia;
Désert, Colette;
Dehais, Patrice;
Esquerré, Diane;
Acloque, Hervé;
Giuffra, Elisabetta;
Djebali, Sarah;
Foissac, Sylvain;
Derrien, Thomas;
Pitel, Frédérique;
Zerjal, Tatiana;
Klopp, Christophe;
Lagarrigue, Sandrine

Publication type:

Correction Notice

Circulating tumor DNA is detectable in canine histiocytic sarcoma, oral malignant melanoma, and multicentric lymphoma.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-020-80332-y

By:

Prouteau, Anaïs;
Denis, Jérôme Alexandre;
De Fornel, Pauline;
Cadieu, Edouard;
Derrien, Thomas;
Kergal, Camille;
Botherel, Nadine;
Ulvé, Ronan;
Rault, Mélanie;
Bouzidi, Amira;
François, Romain;
Dorso, Laetitia;
Lespagnol, Alexandra;
Devauchelle, Patrick;
Abadie, Jérôme;
André, Catherine;
Hédan, Benoît

Publication type:

Article

An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-77586-x

By:

Jehl, Frédéric;
Muret, Kévin;
Bernard, Maria;
Boutin, Morgane;
Lagoutte, Laetitia;
Désert, Colette;
Dehais, Patrice;
Esquerré, Diane;
Acloque, Hervé;
Giuffra, Elisabetta;
Djebali, Sarah;
Foissac, Sylvain;
Derrien, Thomas;
Pitel, Frédérique;
Zerjal, Tatiana;
Klopp, Christophe;
Lagarrigue, Sandrine

Publication type:

Article

PTPN11 mutations in canine and human disseminated histiocytic sarcoma.

Published in:

International Journal of Cancer, 2020, v. 147, n. 6, p. 1657, doi. 10.1002/ijc.32991

By:

Hédan, Benoit;
Rault, Mélanie;
Abadie, Jérôme;
Ulvé, Ronan;
Botherel, Nadine;
Devauchelle, Patrick;
Copie‐Bergman, Christiane;
Cadieu, Edouard;
Parrens, Marie;
Alten, Julia;
Zalcman, Emmanuelle L.;
Cario, Gunnar;
Damaj, Gandhi;
Mokhtari, Karima;
Le Loarer, Francois;
Coulomb‐Lhermine, Aurore;
Derrien, Thomas;
Hitte, Christophe;
Bachelot, Laura;
Breen, Matthew

Publication type:

Article

Fast Computation and Applications of Genome Mappability.

Published in:

PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0030377

By:

Derrien, Thomas;
Estellé, Jordi;
Sola, Santiago Marco;
Knowles, David G.;
Raineri, Emanuele;
Guigó, Roderic;
Ribeca, Paolo

Publication type:

Article

Crystallization of DNA-Capped Gold Nanoparticles in High-Concentration, Divalent Salt Environments.

Published in:

Angewandte Chemie International Edition, 2014, v. 53, n. 5, p. 1316, doi. 10.1002/anie.201307113

By:

Tan, Shawn J.;
Kahn, Jason S.;
Derrien, Thomas L.;
Campolongo, Michael J.;
Zhao, Mervin;
Smilgies, Detlef‐M.;
Luo, Dan

Publication type:

Article

LncRNAs in domesticated animals: from dog to livestock species.

Published in:

Mammalian Genome, 2022, v. 33, n. 2, p. 248, doi. 10.1007/s00335-021-09928-7

By:

Lagarrigue, Sandrine;
Lorthiois, Matthias;
Degalez, Fabien;
Gilot, David;
Derrien, Thomas

Publication type:

Article

Annotation of the domestic dog genome sequence: finding the missing genes.

Published in:

Mammalian Genome, 2012, v. 23, n. 1/2, p. 124, doi. 10.1007/s00335-011-9372-0

By:

Derrien, Thomas;
Vaysse, Amaury;
André, Catherine;
Hitte, Christophe

Publication type:

Article

Improved canine exome designs, featuring ncRNAs and increased coverage of protein coding genes.

Published in:

Scientific Reports, 2015, p. 12810, doi. 10.1038/srep12810

By:

Broeckx, Bart J.G.;
Hitte, Christophe;
Coopman, Frank;
Verhoeven, Geert E.C.;
De Keulenaer, Sarah;
De Meester, Ellen;
Derrien, Thomas;
Alfoldi, Jessica;
Lindblad-Toh, Kerstin;
Bosmans, Tim;
Gielen, Ingrid;
Van Bree, Henri;
Van Ryssen, Bernadette;
Saunders, Jimmy H.;
Van Nieuwerburgh, Filip;
Deforce, Dieter

Publication type:

Article

Revisiting the missing protein-coding gene catalog of the domestic dog.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-62

By:

Derrien, Thomas;
Thézé, Julien;
Vaysse, Amaury;
André, Catherine;
Ostrander, Elaine A.;
Galibert, Francis;
Hitte, Christophe

Publication type:

Article