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Species-Specific Quality Control, Assembly and Contamination Detection in Microbial Isolate Sequences with AQUAMIS.
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- Genes, 2021, v. 12, n. 5, p. 644, doi. 10.3390/genes12050644
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- Article
Predicting bacterial virulence factors – evaluation of machine learning and negative data strategies.
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- Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1596, doi. 10.1093/bib/bbz076
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- Article
Whole genome sequencing reveals extended natural transformation in Campylobacter impacting diagnostics and the pathogens adaptive potential.
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- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-60320-y
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German-Wide Interlaboratory Study Compares Consistency, Accuracy and Reproducibility of Whole-Genome Short Read Sequencing.
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- Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.573972
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- Article
Development of a Novel mcr-6 to mcr-9 Multiplex PCR and Assessment of mcr-1 to mcr-9 Occurrence in Colistin-Resistant Salmonella enterica Isolates From Environment, Feed, Animals and Food (2011–2018) in Germany.
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- Frontiers in Microbiology, 2020, p. 1, doi. 10.3389/fmicb.2020.00080
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- Article
Fishing in the Soup – Pathogen Detection in Food Safety Using Metabarcoding and Metagenomic Sequencing.
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- Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.01805
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- Article
Complex Degradation Processes Lead to Non-Exponential Decay Patterns and Age-Dependent Decay Rates of Messenger RNA.
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- PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0055442
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- Article
Transient Phenomena in Gene Expression after Induction of Transcription.
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- PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0035044
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- Article
Genetic and Phenotypic Virulence Potential of Non-O1/Non-O139 Vibrio cholerae Isolated from German Retail Seafood.
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- Microorganisms, 2023, v. 11, n. 11, p. 2751, doi. 10.3390/microorganisms11112751
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- Article
Exploring Long-Read Metagenomics for Full Characterization of Shiga Toxin-Producing Escherichia coli in Presence of Commensal E. coli.
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- Microorganisms, 2023, v. 11, n. 8, p. 2043, doi. 10.3390/microorganisms11082043
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- Article
What WGS Reveals about Salmonella enterica subsp. enterica in Wildlife in Germany.
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- Microorganisms, 2021, v. 9, n. 9, p. 1911, doi. 10.3390/microorganisms9091911
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- Article
Phenotypic and Genotypic Properties of Fluoroquinolone-Resistant, qnr -Carrying Escherichia coli Isolated from the German Food Chain in 2017.
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- Microorganisms, 2021, v. 9, n. 6, p. 1308, doi. 10.3390/microorganisms9061308
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- Article
Outcome of Different Sequencing and Assembly Approaches on the Detection of Plasmids and Localization of Antimicrobial Resistance Genes in Commensal Escherichia coli.
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- Microorganisms, 2021, v. 9, n. 3, p. 598, doi. 10.3390/microorganisms9030598
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- Article
PaPrBaG: A machine learning approach for the detection of novel pathogens from NGS data.
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- Scientific Reports, 2017, p. 39194, doi. 10.1038/srep39194
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- Article
Decentralized Investigation of Bacterial Outbreaks Based on Hashed cgMLST.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.649517
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- Article
Toward an Integrated Genome-Based Surveillance of Salmonella enterica in Germany.
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- Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2021.626941
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- Article
Proficiency Testing of Metagenomics-Based Detection of Food-Borne Pathogens Using a Complex Artificial Sequencing Dataset.
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- Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.575377
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Genetic characterization of a multidrug-resistant Salmonella enterica serovar Agona isolated from a dietary supplement in Germany.
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- Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2023.1284929
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Genetic characterization of a multidrug-resistant Salmonella enterica serovar Agona isolated from a dietary supplement in Germany.
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- Frontiers in Microbiology, 2023, p. 01, doi. 10.3389/fmicb.2023.1284929
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- Article
First complete genome sequence and comparative analysis of Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) indicates host adaptation traits to sheep.
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- Gut Pathogens, 2019, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13099-019-0330-9
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- Article
Identification of knowledge gaps in whole-genome sequence analysis of multi-resistant thermotolerant Campylobacter spp.
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- BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10014-w
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- Article