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A framework for considering prior information in network‐based approaches to omics data analysis.
- Published in:
- Proteomics, 2023, v. 23, n. 21/22, p. 1, doi. 10.1002/pmic.202200402
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- Article
Selective enrichment of plasma cell-free messenger RNA in cancer-associated extracellular vesicles.
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- Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-05232-z
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- Article
Author- sourced capture of pathway knowledge in computable form using Biofactoid.
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- eLife, 2021, p. 1, doi. 10.7554/eLife.68292
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- Article
Newt: a comprehensive web-based tool for viewing, constructing and analyzing biological maps.
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- Bioinformatics, 2021, v. 37, n. 10, p. 1475, doi. 10.1093/bioinformatics/btaa850
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- Article
Systematic interrogation of mutation groupings reveals divergent downstream expression programs within key cancer genes.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04147-y
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- Article
Ribavirin shows antiviral activity against SARS-CoV-2 and downregulates the activity of TMPRSS2 and the expression of ACE2 in vitro.
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- Canadian Journal of Physiology & Pharmacology, 2021, v. 99, n. 5, p. 449, doi. 10.1139/cjpp-2020-0734
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- Article
Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.
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- 2020
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- Correction Notice
COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.
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- Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0477-8
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- Article
Cancer-associated mutations in DICER1 RNase IIIa and IIIb domains exert similar effects on miRNA biogenesis.
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- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11610-1
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- Article
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.
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- Journal of Integrative Bioinformatics, 2019, v. 16, n. 2, p. 1, doi. 10.1515/jib-2019-0022
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- Article
Large-scale automated machine reading discovers new cancer-driving mechanisms.
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- Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay098
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- Article
PaxtoolsR: pathway analysis in R using Pathway Commons.
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- Bioinformatics, 2016, v. 32, n. 8, p. 1262, doi. 10.1093/bioinformatics/btv733
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- Article
Perturbation biology nominates upstream--downstream drug combinations in RAF inhibitor resistant melanoma cells.
- Published in:
- eLife, 2015, p. 1, doi. 10.7554/eLife.04640
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- Article
SBGNViz: A Tool for Visualization and Complexity Management of SBGN Process Description Maps.
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- PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0128985
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- Article
Systematic identification of cancer driving signaling pathways based on mutual exclusivity of genomic alterations.
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- Genome Biology, 2015, v. 16, n. 1, p. 45, doi. 10.1186/s13059-015-0612-6
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- Article
Prediction of individualized therapeutic vulnerabilities in cancer from genomic profiles.
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- Bioinformatics, 2014, v. 30, n. 14, p. 2051, doi. 10.1093/bioinformatics/btu164
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- Article
Integrating biological pathways and genomic profiles with ChiBE 2.
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- BMC Genomics, 2014, v. 15, n. 1, p. 642, doi. 10.1186/1471-2164-15-642
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- Article
Pattern search in BioPAX models.
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- Bioinformatics, 2014, v. 30, n. 1, p. 139, doi. 10.1093/bioinformatics/btt539
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- Article
The BioPAX Validator.
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- Bioinformatics, 2013, v. 29, n. 20, p. 2659, doi. 10.1093/bioinformatics/btt452
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- Article
Using Biological Pathway Data with Paxtools.
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- PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003194
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- Article
Software support for SBGN maps: SBGN-ML and LibSBGN.
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- Bioinformatics, 2012, v. 28, n. 15, p. 2016, doi. 10.1093/bioinformatics/bts270
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- Article
Corrigendum: The BioPAX community standard for pathway data sharing.
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- 2012
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- Erratum
BioPAX support in CellDesigner.
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- Bioinformatics, 2011, v. 27, n. 24, p. 3437, doi. 10.1093/bioinformatics/btr586
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- Article
Pathway Commons, a web resource for biological pathway data.
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- Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D685, doi. 10.1093/nar/gkq1039
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- Article
The BioPAX community standard for pathway data sharing.
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- 2010
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- Correction notice
Discovering modulators of gene expression.
- Published in:
- Nucleic Acids Research, 2010, v. 38, n. 17, p. 5648, doi. 10.1093/nar/gkq287
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- Article
The BioPAX community standard for pathway data sharing.
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- Nature Biotechnology, 2010, v. 28, n. 9, p. 935, doi. 10.1038/nbt.1666
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- Article
ChiBE: interactive visualization and manipulation of BioPAX pathway models.
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- Bioinformatics, 2010, v. 26, n. 3, p. 429, doi. 10.1093/bioinformatics/btp665
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- Publication type:
- Article
Automated Network Analysis Identifies Core Pathways in Glioblastoma.
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- PLoS ONE, 2010, v. 5, n. 2, p. 1, doi. 10.1371/journal.pone.0008918
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- Article
Erratum: The Systems Biology Graphical Notation.
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- 2009
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- Correction notice
The Systems Biology Graphical Notation.
- Published in:
- Nature Biotechnology, 2009, v. 27, n. 8, p. 735, doi. 10.1038/nbt.1558
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- Publication type:
- Article
PATIKA mad: Putting microarray data into pathway context.
- Published in:
- Proteomics, 2008, v. 8, n. 11, p. 2196, doi. 10.1002/pmic.200700769
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- Publication type:
- Article