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Longitudinal Serum Protein Analysis of Women with a High Risk of Developing Breast Cancer Reveals Large Interpatient Versus Small Intrapatient Variations: First Results from the TESTBREAST Study.
Published in:
International Journal of Molecular Sciences, 2022, v. 23, n. 20, p. 12399, doi. 10.3390/ijms232012399
By:
- Hagenaars, Sophie C.;
- Dekker, Lennard J. M.;
- Ravesteijn, Bob;
- van Vlierberghe, Ronald L. P.;
- Romijn, Fred P. H. T. M.;
- Verhoeff, Linda;
- Witkamp, Arjen J.;
- Schenk, Karin E.;
- Keymeulen, Kristien B. I. M.;
- Menke-Pluijmers, Marian B. E.;
- Dassen, Anneriet E.;
- Kortmann, Birgitta A.;
- de Vries, Jakob;
- Rutgers, Emiel J. T.;
- van der Burgt, Yuri E. M.;
- Meershoek-Klein Kranenbarg, Elma;
- Cobbaert, Christa M.;
- Luider, Theo M.;
- Mesker, Wilma E.;
- Tollenaar, Rob A. E. M.
Publication type:
Article
An antibody-based biomarker discovery method by mass spectrometry sequencing of complementarity determining regions.
Published in:
Analytical & Bioanalytical Chemistry, 2011, v. 399, n. 3, p. 1081, doi. 10.1007/s00216-010-4361-9
By:
- Dekker, Lennard J. M.;
- Zeneyedpour, Lona;
- Brouwer, Eric;
- Duijn, Martijn M. van;
- Sillevis Smitt, Peter A. E.;
- Luider, Theo M.
Publication type:
Article
Ultrafast and high-throughput mass spectrometric assay for therapeutic drug monitoring of antiretroviral drugs in pediatric HIV-1 infection applying dried blood spots.
Published in:
Analytical & Bioanalytical Chemistry, 2010, v. 398, n. 1, p. 319, doi. 10.1007/s00216-010-3952-9
By:
- Meesters, Roland J. W.;
- van Kampen, Jeroen J. A.;
- Reedijk, Mariska L.;
- Scheuer, Rachel D.;
- Dekker, Lennard J. M.;
- Burger, David M.;
- Hartwig, Nico G.;
- Osterhaus, Albert D. M. E.;
- Luider, Theo M.;
- Gruters, Rob A.
Publication type:
Article
Using Targeted Liquid Chromatography-Tandem Mass Spectrometry to Rapidly Detect β-Lactam, Aminoglycoside, and Fluoroquinolone Resistance Mechanisms in Blood Cultures Growing E. coli or K. pneumoniae.
Published in:
Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.793738
By:
- Foudraine, Dimard E.;
- Dekker, Lennard J. M.;
- Strepis, Nikolaos;
- Nispeling, Stan J.;
- Raaphorst, Merel N.;
- Kloezen, Wendy;
- Colle, Piet;
- Verbon, Annelies;
- Klaassen, Corné H. W.;
- Luider, Theo M.;
- Goessens, Wil H. F.
Publication type:
Article
Liquid Chromatography-Tandem Mass Spectrometry Analysis Demonstrates a Decrease in Porins and Increase in CMY-2 β-Lactamases in Escherichia coli Exposed to Increasing Concentrations of Meropenem.
Published in:
Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.793738
By:
- Foudraine, Dimard E.;
- Aarents, Camiel N. M.;
- Wattel, Agnes A.;
- van Boxtel, Ria;
- Strepis, Nikolaos;
- ten Kate, Marian T.;
- Verbon, Annelies;
- Luider, Theo M.;
- Klaassen, Corné H. W.;
- Hays, John;
- Dekker, Lennard J. M.;
- Tommassen, Jan;
- Goessens, Wil H. F.
Publication type:
Article
Peptides from the Variable Region of Specific Antibodies Are Shared among Lung Cancer Patients.
Published in:
PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0096029
By:
- de Costa, Dominique;
- Broodman, Ingrid;
- Calame, Wim;
- Stingl, Christoph;
- Dekker, Lennard J. M.;
- Vernhout, René M.;
- de Koning, Harry J.;
- Hoogsteden, Henk C.;
- Smitt, Peter A. E. Sillevis.;
- van Klaveren, Rob J.;
- Luider, Theo M.;
- VanDuijn, Martijn M.
Publication type:
Article
Collagen Peptides in Urine: A New Promising Biomarker for the Detection of Colorectal Liver Metastases.
Published in:
PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0070918
By:
- Bröker, Mirelle E. E.;
- Lalmahomed, Zarina S.;
- Roest, Henk P.;
- van Huizen, Nick A.;
- Dekker, Lennard J. M.;
- Calame, Wim;
- Verhoef, Cornelis;
- IJzermans, Jan N. M.;
- Luider, Theo M.
Publication type:
Article
Ultra-Fast Analysis of Plasma and Intracellular Levels of HIV Protease Inhibitors in Children: A Clinical Application of MALDI Mass Spectrometry.
Published in:
PLoS ONE, 2010, v. 5, n. 7, p. 1, doi. 10.1371/journal.pone.0011409
By:
- Kampen, Jeroen J. A. van;
- Reedijk, Mariska L.;
- Burgers, Peter C.;
- Dekker, Lennard J. M.;
- Hartwig, Nico G.;
- Ende, Ineke E. van der;
- Groot, Ronald de;
- Osterhaus, Albert D. M. E.;
- Burger, David M.;
- Luider, Theo M.;
- Gruters, Rob A.
Publication type:
Article
Serum proteomics in amnestic mild cognitive impairment.
Published in:
Proteomics, 2013, v. 13, n. 16, p. 2526, doi. 10.1002/pmic.201200190
By:
- IJsselstijn, Linda;
- Papma, Janne M.;
- Dekker, Lennard J. M.;
- Calame, Wim;
- Stingl, Christoph;
- Koudstaal, Peter J.;
- Prins, Niels D.;
- Sillevis Smitt, Peter A. E.;
- Luider, Theo M.
Publication type:
Article
Mass spectrometry analyses of κ and λ fractions result in increased number of complementarity-determining region identifications.
Published in:
Proteomics, 2012, v. 12, n. 2, p. 183, doi. 10.1002/pmic.201100244
By:
- Broodman, Ingrid;
- de Costa, Dominique;
- Stingl, Christoph;
- Dekker, Lennard J. M.;
- VanDuijn, Martijn M.;
- Lindemans, Jan;
- van Klaveren, Rob J.;
- Luider, Theo M.
Publication type:
Article
Differential expression of protease activity in serum samples of prostate carcinoma patients with metastases.
Published in:
Proteomics, 2010, v. 10, n. 12, p. 2348, doi. 10.1002/pmic.200900682
By:
- Dekker, Lennard J. M.;
- Burgers, Peter C.;
- Charif, Halima;
- van Rijswijk, Angelique L. C. T.;
- Titulaer, Mark K.;
- Jenster, Guido;
- Bischoff, Rainer;
- Bangma, Chris H.;
- Luider, Theo M.
Publication type:
Article
Cryo-Gel embedding compound for renal biopsy biobanking.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-51962-8
By:
- Snijders, Malou L. H.;
- Zajec, Marina;
- Walter, Laurens A. J.;
- de Louw, Remco M. A. A.;
- Oomen, Monique H. A.;
- Arshad, Shazia;
- van den Bosch, Thierry P. P.;
- Dekker, Lennard J. M.;
- Doukas, Michail;
- Luider, Theo M.;
- Riegman, Peter H. J.;
- van Kemenade, Folkert J.;
- Clahsen-van Groningen, Marian C.
Publication type:
Article
Circulating glioma biomarkers.
Published in:
Neuro-Oncology, 2015, v. 17, n. 3, p. 343, doi. 10.1093/neuonc/nou207
By:
- Kros, Johan M.;
- Mustafa, Dana M.;
- Dekker, Lennard J. M.;
- Sillevis Smitt, Peter A. E.;
- Luider, Theo M.;
- Ping-Pin Zheng
Publication type:
Article
Metabolic changes related to the IDH1 mutation in gliomas preserve TCA‐cycle activity: An investigation at the protein level.
Published in:
FASEB Journal, 2020, v. 34, n. 3, p. 3646, doi. 10.1096/fj.201902352R
By:
- Dekker, Lennard J. M.;
- Wu, Suying;
- Jurriëns, Cherise;
- Mustafa, Dana A. N.;
- Grevers, Frederieke;
- Burgers, Peter C.;
- Sillevis Smitt, Peter A. E.;
- Kros, Johan M.;
- Luider, Theo M.
Publication type:
Article
De Novo Sequencing of Peptides from High-Resolution Bottom-Up Tandem Mass Spectra using Top-Down Intended Methods.
Published in:
Proteomics, 2017, v. 17, n. 23/24., p. n/a, doi. 10.1002/pmic.201600321
By:
- Vyatkina, Kira;
- Dekker, Lennard J. M.;
- Wu, Si;
- VanDuijn, Martijn M.;
- Liu, Xiaowen;
- Tolić, Nikola;
- Luider, Theo M.;
- Paša‐Tolić, Ljiljana
Publication type:
Article
Dimerization of Peptides by Calcium Ions: Investigation of a Calcium-Binding Motif.
Published in:
International Journal of Proteomics, 2014, p. 1, doi. 10.1155/2014/153712
By:
- Jamalian, Azadeh;
- Sneekes, Evert-Jan;
- Dekker, Lennard J. M.;
- Ursem, Mario;
- Luider, Theo M.;
- Burgers, Peter C.
Publication type:
Article
A mass spectrometry based imaging method developed for the intracellular detection of HIV protease inhibitors.
Published in:
Rapid Communications in Mass Spectrometry: RCM, 2009, v. 23, n. 8, p. 1183, doi. 10.1002/rcm.3981
By:
- Dekker, Lennard J. M.;
- van Kampen, Jeroen J. A.;
- Reedijk, Mariska L.;
- Burgers, Peter C.;
- Gruters, Rob A.;
- Osterhaus, Albert D. M. E.;
- Luider, Theo M.
Publication type:
Article
Serum levels of arachidonic acid metabolites change during prostate cancer progression.
Published in:
Prostate, 2014, v. 74, n. 6, p. 618, doi. 10.1002/pros.22779
By:
- Rodríguez‐Blanco, Giovanny;
- Burgers, Peter C.;
- Dekker, Lennard J. M.;
- IJzermans, Jan J. N.;
- Wildhagen, Mark F.;
- Schenk‐Braat, Ellen A. M.;
- Bangma, Chris H.;
- Jenster, Guido;
- Luider, Theo M.
Publication type:
Article
Exploring antimicrobial resistance to beta-lactams, aminoglycosides and fluoroquinolones in E. coli and K. pneumoniae using proteogenomics.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-91905-w
By:
- Foudraine, Dimard E.;
- Strepis, Nikolaos;
- Stingl, Christoph;
- ten Kate, Marian T.;
- Verbon, Annelies;
- Klaassen, Corné H. W.;
- Goessens, Wil H. F.;
- Luider, Theo M.;
- Dekker, Lennard J. M.
Publication type:
Article
Analysis of Virus and Host Proteomes During Productive HSV-1 and VZV Infection in Human Epithelial Cells.
Published in:
Frontiers in Microbiology, 2020, v. 11, p. 1, doi. 10.3389/fmicb.2020.01179
By:
- Ouwendijk, Werner J. D.;
- Dekker, Lennard J. M.;
- van den Ham, Henk-Jan;
- Lenac Rovis, Tihana;
- Haefner, Erik S.;
- Jonjic, Stipan;
- Haas, Jürgen;
- Luider, Theo M.;
- Verjans, Georges M. G. M.
Publication type:
Article
Evaluation of different pretreatment protocols to detect accurately clinical carbapenemase-producing Enterobacteriaceae by MALDI-TOF.
Published in:
2016
By:
- Monteferrante, Carmine G.;
- Sultan, Sadaf;
- ten Kate, Marian T.;
- Dekker, Lennard J. M.;
- Sparbier, Katrin;
- Peer, Markus;
- Kostzrewa, Markus;
- Luider, Theo M.;
- Goessens, Wil H. F.;
- Burgers, Peter C.
Publication type:
journal article
Top-down analysis of protein samples by de novo sequencing techniques.
Published in:
Bioinformatics, 2016, v. 32, n. 18, p. 2753, doi. 10.1093/bioinformatics/btw307
By:
- Vyatkina, Kira;
- Pevzner, Pavel A.;
- Si Wu;
- Dekker, Lennard J. M.;
- VanDuijn, Martijn M.;
- Luider, Theo M.;
- Xiaowen Liu;
- Tolić, Nikola;
- Paša-Tolic, Ljiljana
Publication type:
Article
Accurate Detection of the Four Most Prevalent Carbapenemases in E. coli and K. pneumoniae by High-Resolution Mass Spectrometry.
Published in:
Frontiers in Microbiology, 2019, v. 10, p. 1, doi. 10.3389/fmicb.2019.02760
By:
- Foudraine, Dimard E.;
- Dekker, Lennard J. M.;
- Strepis, Nikolaos;
- Bexkens, Michiel L.;
- Klaassen, Corné H. W.;
- Luider, Theo M.;
- Goessens, Wil H. F.
Publication type:
Article
Neoantigens in Chronic Obstructive Pulmonary Disease and Lung Cancer: A Point of View.
Published in:
Proteomics - Clinical Applications, 2019, v. 13, n. 2, p. N.PAG, doi. 10.1002/prca.201800093
By:
- Zeneyedpour, Lona;
- Dekker, Lennard J. M.;
- Sten‐van't Hoff, Jenny J. M.;
- Burgers, Peter C.;
- ten Hacken, Nick H. T.;
- Luider, Theo M.
Publication type:
Article
Comparison of Targeted Mass Spectrometry Techniques with an Immunoassay: A Case Study for HSP90α.
Published in:
Proteomics - Clinical Applications, 2018, v. 12, n. 1, p. 1, doi. 10.1002/prca.201700107
By:
- Güzel, Coşkun;
- Govorukhina, Natalia I.;
- Stingl, Christoph;
- Dekker, Lennard J. M.;
- Boichenko, Alexander;
- van der Zee, Ate G. J.;
- Bischoff, Rainer P. H.;
- Luider, Theo M.
Publication type:
Article
Differential expression of protease activity in serum samples of prostate carcinoma patients with metastases.
Published in:
Proteomics - Clinical Applications, 2010, v. 4, n. 10/11, p. 850, doi. 10.1002/prca.201090067
By:
- Dekker, Lennard J. M.;
- Burgers, Peter C.;
- Charif, Halima;
- van Rijswijk, Angelique L. C. T.;
- Titulaer, Mark K.;
- Jenster, Guido;
- Bischoff, Rainer;
- Bangma, Chris H.;
- Luider, Theo M.
Publication type:
Article
Expression of virulence and antimicrobial related proteins in Burkholderia mallei and Burkholderia pseudomallei.
Published in:
PLoS Neglected Tropical Diseases, 2023, v. 16, n. 1, p. 1, doi. 10.1371/journal.pntd.0011006
By:
- Paauw, Armand;
- Scholz, Holger C.;
- Mars-Groenendijk, Roos H.;
- Dekker, Lennard J. M.;
- Luider, Theo M.;
- van Leeuwen, Hans C.
Publication type:
Article

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