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Enhancer-driven 3D chromatin domain folding modulates transcription in human mammary tumor cells.
- Published in:
- Life Science Alliance, 2024, v. 7, n. 2, p. 1, doi. 10.26508/lsa.202302154
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- Publication type:
- Article
Mitotic chromosomes scale to nuclear-cytoplasmic ratio and cell size in Xenopus.
- Published in:
- eLife, 2023, p. 1, doi. 10.7554/eLife.84360
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- Publication type:
- Article
Regulation of the mitotic chromosome folding machines.
- Published in:
- Biochemical Journal, 2022, v. 479, n. 20, p. 2153, doi. 10.1042/BCJ20210140
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- Publication type:
- Article
Nutritional control regulates symbiont proliferation and life history in coral-dinoflagellate symbiosis.
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- BMC Biology, 2022, v. 20, n. 1, p. 1, doi. 10.1186/s12915-022-01306-2
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- Publication type:
- Article
Chromosome-Level Reference Genomes for Two Strains of Caenorhabditis briggsae: An Improved Platform for Comparative Genomics.
- Published in:
- Genome Biology & Evolution, 2022, v. 14, n. 4, p. 1, doi. 10.1093/gbe/evac042
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- Publication type:
- Article
Loops, topologically associating domains, compartments, and territories are elastic and robust to dramatic nuclear volume swelling.
- Published in:
- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-08602-5
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- Publication type:
- Article
Inner nuclear protein Matrin-3 coordinates cell differentiation by stabilizing chromatin architecture.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26574-4
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- Publication type:
- Article
Linker histone H1.8 inhibits chromatin binding of condensins and DNA topoisomerase II to tune chromosome length and individualization.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.68918
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- Publication type:
- Article
Hi-C 3.0: Improved Protocol for Genome-Wide Chromosome Conformation Capture.
- Published in:
- Current Protocols, 2021, v. 1, n. 7, p. 1, doi. 10.1002/cpz1.198
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- Publication type:
- Article
Erratum to: Chromosome-Level Assembly of the Atlantic Silverside Genome Reveals Extreme Levels of Sequence Diversity and Structural Genetic Variation.
- Published in:
- Genome Biology & Evolution, 2021, v. 13, n. 7, p. 1, doi. 10.1093/gbe/evab163
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- Publication type:
- Article
Chromosome-Level Assembly of the Atlantic Silverside Genome Reveals Extreme Levels of Sequence Diversity and Structural Genetic Variation.
- Published in:
- Genome Biology & Evolution, 2021, v. 13, n. 6, p. 1, doi. 10.1093/gbe/evab098
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- Publication type:
- Article
Clustering of strong replicators associated with active promoters is sufficient to establish an early‐replicating domain.
- Published in:
- EMBO Journal, 2020, v. 39, n. 21, p. 1, doi. 10.15252/embj.201899520
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- Publication type:
- Article
rad21 Is Involved in Corneal Stroma Development by Regulating Neural Crest Migration.
- Published in:
- International Journal of Molecular Sciences, 2020, v. 21, n. 20, p. 7807, doi. 10.3390/ijms21207807
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- Publication type:
- Article
Large domains of heterochromatin direct the formation of short mitotic chromosome loops.
- Published in:
- eLife, 2020, p. 1, doi. 10.7554/eLife.57212
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- Publication type:
- Article
Highly structured homolog pairing reflects functional organization of the Drosophila genome.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12208-3
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- Publication type:
- Article
The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12211-8
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- Publication type:
- Article
Measuring the reproducibility and quality of Hi-C data.
- Published in:
- Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1658-7
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- Publication type:
- Article
The non-canonical SMC protein SmcHD1 antagonises TAD formation and compartmentalisation on the inactive X chromosome.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-018-07907-2
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- Publication type:
- Article
Progress toward an amplifiable metabolic label for DNA: conversion of 4-thiothymidine (4sT) to 5-methyl-2′-deoxycytidine and synthesis of a 4sT phosphorodiamidate prodrug.
- Published in:
- Canadian Journal of Chemistry, 2018, v. 96, n. 7, p. 636, doi. 10.1139/cjc-2017-0732
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- Publication type:
- Article
Genetics and Genomics of Longitudinal Lung Function Patterns in Individuals with Asthma.
- Published in:
- American Journal of Respiratory & Critical Care Medicine, 2016, v. 194, n. 12, p. 1465, doi. 10.1164/rccm.201602-0250OC
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- Publication type:
- Article
Genetics and Genomics of Longitudinal Lung Function Patterns in Individuals with Asthma.
- Published in:
- 2016
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- Publication type:
- journal article
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing.
- Published in:
- Genome Biology, 2015, v. 18, p. 259, doi. 10.1186/s13059-015-0831-x
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- Publication type:
- Article
Structural and functional diversity of Topologically Associating Domains.
- Published in:
- FEBS Letters, 2015, v. 589, n. 20PartA, p. 2877, doi. 10.1016/j.febslet.2015.08.044
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- Publication type:
- Article
The yeast genome undergoes significant topological reorganization in quiescence.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. 17, p. 8299, doi. 10.1093/nar/gkv723
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- Publication type:
- Article
Chromatin interaction analysis reveals changes in small chromosome and telomere clustering between epithelial and breast cancer cells.
- Published in:
- Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0768-0
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- Publication type:
- Article
Condensin-driven remodelling of X chromosome topology during dosage compensation.
- Published in:
- Nature, 2015, v. 523, n. 7559, p. 240, doi. 10.1038/nature14450
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- Publication type:
- Article
Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. pombe.
- Published in:
- Nature, 2014, v. 516, n. 7531, p. 432, doi. 10.1038/nature13833
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- Publication type:
- Article
High-throughput genome scaffolding from in vivo DNA interaction frequency.
- Published in:
- Nature Biotechnology, 2013, v. 31, n. 12, p. 1143, doi. 10.1038/nbt.2768
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- Publication type:
- Article
Biological techniques: Chromosomes captured one by one.
- Published in:
- Nature, 2013, v. 502, n. 7469, p. 45, doi. 10.1038/nature12691
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- Publication type:
- Article
Segmental folding of chromosomes: A basis for structural and regulatory chromosomal neighborhoods?
- Published in:
- BioEssays, 2013, v. 35, n. 9, p. 818, doi. 10.1002/bies.201300040
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- Publication type:
- Article
Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data.
- Published in:
- Nature Reviews Genetics, 2013, v. 14, n. 6, p. 390, doi. 10.1038/nrg3454
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- Publication type:
- Article
Polymer models of yeast S. cerevisiae genome organization.
- Published in:
- 2013
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- Publication type:
- Conference Paper
S cerevisiae genome as a confined equilibrium polymer brush.
- Published in:
- 2013
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- Publication type:
- Conference Paper
Mating type specific chromosome conformation in Saccharomyces cerevisiae.
- Published in:
- 2013
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- Publication type:
- Conference Paper
Folding principles of genomes.
- Published in:
- Epigenetics & Chromatin, 2013, v. 6, n. S1, p. 1, doi. 10.1186/1756-8935-6-S1-O40
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- Publication type:
- Article
HiTC: exploration of high-throughput ‘C’ experiments.
- Published in:
- Bioinformatics, 2012, v. 28, n. 21, p. 2843, doi. 10.1093/bioinformatics/bts521
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- Publication type:
- Article
Iterative correction of Hi-C data reveals hallmarks of chromosome organization.
- Published in:
- Nature Methods, 2012, v. 9, n. 10, p. 999, doi. 10.1038/nmeth.2148
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- Publication type:
- Article
The long-range interaction landscape of gene promoters.
- Published in:
- Nature, 2012, v. 489, n. 7414, p. 109, doi. 10.1038/nature11279
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- Publication type:
- Article
Spatial partitioning of the regulatory landscape of the X-inactivation centre.
- Published in:
- Nature, 2012, v. 485, n. 7398, p. 381, doi. 10.1038/nature11049
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- Publication type:
- Article
Folding principles of genomes.
- Published in:
- 2012
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- Publication type:
- Abstract
Yeast one-hybrid assays for gene-centered human gene regulatory network mapping.
- Published in:
- Nature Methods, 2011, v. 8, n. 12, p. 1050, doi. 10.1038/nmeth.1764
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- Publication type:
- Article
Enhanced yeast one-hybrid assays for high-throughput gene-centered regulatory network mapping.
- Published in:
- Nature Methods, 2011, v. 8, n. 12, p. 1059, doi. 10.1038/nmeth.1748
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- Publication type:
- Article
Mediator and cohesin connect gene expression and chromatin architecture.
- Published in:
- 2011
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- Publication type:
- Correction notice
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression.
- Published in:
- Nature, 2011, v. 472, n. 7341, p. 120, doi. 10.1038/nature09819
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- Publication type:
- Article
The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules.
- Published in:
- Nature Structural & Molecular Biology, 2011, v. 18, n. 1, p. 107, doi. 10.1038/nsmb.1936
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- Publication type:
- Article
Genomics tools for unraveling chromosome architecture.
- Published in:
- Nature Biotechnology, 2010, v. 28, n. 10, p. 1089, doi. 10.1038/nbt.1680
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- Publication type:
- Article
Mediator and cohesin connect gene expression and chromatin architecture.
- Published in:
- Nature, 2010, v. 467, n. 7314, p. 430, doi. 10.1038/nature09380
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- Publication type:
- Article
Cell-type-specific long-range looping interactions identify distant regulatory elements of the CFTR gene.
- Published in:
- Nucleic Acids Research, 2010, v. 38, n. 13, p. 4325, doi. 10.1093/nar/gkq175
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- Publication type:
- Article
My5C: web tools for chromosome conformation capture studies.
- Published in:
- 2009
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- Publication type:
- Letter
Gene dates, parties and galas. Symposium on Chromatin Dynamics and Higher Order Organization.
- Published in:
- EMBO Reports, 2009, v. 10, n. 7, p. 689, doi. 10.1038/embor.2009.136
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- Publication type:
- Article