Works matching AU Degui Zhi

Results: 89

Public Perception Analysis of Tweets During the 2015 Measles Outbreak: Comparative Study Using Convolutional Neural Network Models.

Published in:

2018

By:

Jingcheng Du;
Lu Tang;
Yang Xiang;
Degui Zhi;
Jun Xu;
Hsing-Yi Song;
Cui Tao;
Du, Jingcheng;
Tang, Lu;
Xiang, Yang;
Zhi, Degui;
Xu, Jun;
Song, Hsing-Yi;
Tao, Cui

Publication type:

journal article

Oxidative Modifications of Protein Tyrosyl Residues Are Increased in Plasma of Human Subjects with Interstitial Lung Disease.

Published in:

2016

By:

Pennathur, Subramaniam;
Vivekanandan-Giri, Anuradha;
Locy, Morgan L.;
Kulkarni, Tejaswini;
Degui Zhi;
Lixia Zeng;
Byun, Jaeman;
de Andrade, Joao A.;
Thannickal, Victor J.;
Zhi, Degui;
Zeng, Lixia

Publication type:

journal article

Haplotype Kernel Association Test as a Powerful Method to Identify Chromosomal Regions Harboring Uncommon Causal Variants.

Published in:

Genetic Epidemiology, 2013, v. 37, n. 6, p. 560, doi. 10.1002/gepi.21740

By:

Lin, Wan‐Yu;
Yi, Nengjun;
Lou, Xiang‐Yang;
Zhi, Degui;
Zhang, Kui;
Gao, Guimin;
Tiwari, Hemant K.;
Liu, Nianjun

Publication type:

Article

Pathway-Based Approaches for Sequencing-Based Genome-Wide Association Studies.

Published in:

Genetic Epidemiology, 2013, v. 37, n. 5, p. 478, doi. 10.1002/gepi.21728

By:

Wu, Guodong;
Zhi, Degui

Publication type:

Article

Haplotype-Based Methods for Detecting Uncommon Causal Variants With Common SNPs.

Published in:

Genetic Epidemiology, 2012, v. 36, n. 6, p. 572, doi. 10.1002/gepi.21650

By:

Lin, Wan-Yu;
Yi, Nengjun;
Zhi, Degui;
Zhang, Kui;
Gao, Guimin;
Tiwari, Hemant K.;
Liu, Nianjun

Publication type:

Article

Bayesian analysis of rare variants in genetic association studies.

Published in:

Genetic Epidemiology, 2011, v. 35, n. 1, p. 57, doi. 10.1002/gepi.20554

By:

Yi, Nengjun;
Zhi, Degui

Publication type:

Article

Joint haplotype phasing and genotype calling of multiple individuals using haplotype informative reads.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2427, doi. 10.1093/bioinformatics/btt418

By:

Zhang, Kui;
Zhi, Degui

Publication type:

Article

Genotype calling from next-generation sequencing data using haplotype information of reads.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 938, doi. 10.1093/bioinformatics/bts047

By:

Zhi, Degui;
Wu, Jihua;
Liu, Nianjun;
Zhang, Kui

Publication type:

Article

Length bias correction for RNA-seq data in gene set analyses.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 662, doi. 10.1093/bioinformatics/btr005

By:

Gao, Liyan;
Fang, Zhide;
Zhang, Kui;
Zhi, Degui;
Cui, Xiangqin

Publication type:

Article

Alignment-free local structural search by writhe decomposition.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1176, doi. 10.1093/bioinformatics/btq127

By:

Zhi, Degui;
Shatsky, Maxim;
Brenner, Steven E.;
Tramontano, Anna

Publication type:

Article

Asthma Exacerbation Prediction and Risk Factor Analysis Based on a Time-Sensitive, Attentive Neural Network: Retrospective Cohort Study.

Published in:

2020

By:

Xiang, Yang;
Ji, Hangyu;
Zhou, Yujia;
Li, Fang;
Du, Jingcheng;
Rasmy, Laila;
Wu, Stephen;
Zheng, W Jim;
Xu, Hua;
Zhi, Degui;
Zhang, Yaoyun;
Tao, Cui

Publication type:

journal article

The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: systems biology on diverse data types.

Published in:

BMC Systems Biology, 2018, v. 12, n. 8, p. N.PAG, doi. 10.1186/s12918-018-0648-9

By:

Wang, Kai;
Liu, Xiaoming;
Guo, Yan;
Wu, Zhijin;
Zhi, Degui;
Ruan, Jianhua;
Zhao, Zhongming

Publication type:

Article

Detecting transcription of ribosomal protein pseudogenes in diverse human tissues from RNA-seq data.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 412, doi. 10.1186/1471-2164-13-412

By:

Tonner, Peter;
Srinivasasainagendra, Vinodh;
Shaojie Zhang;
Degui Zhi

Publication type:

Article

Cyclosporine-mediated allograft fibrosis is associated with micro- RNA-21 through AKT signaling.

Published in:

Transplant International, 2015, v. 28, n. 2, p. 232, doi. 10.1111/tri.12471

By:

Chen, Jianguo;
Zmijewska, Anna;
Zhi, Degui;
Mannon, Roslyn B.

Publication type:

Article

Genomics of Post-Prandial Lipidomic Phenotypes in the Genetics of Lipid Lowering Drugs and Diet Network (GOLDN) Study.

Published in:

PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0099509

By:

Irvin, Marguerite R.;
Zhi, Degui;
Aslibekyan, Stella;
Claas, Steven A.;
Absher, Devin M.;
Ordovas, Jose M.;
Tiwari, Hemant K.;
Watkins, Steve;
Arnett, Donna K.

Publication type:

Article

Statistical Guidance for Experimental Design and Data Analysis of Mutation Detection in Rare Monogenic Mendelian Diseases by Exome Sequencing.

Published in:

PLoS ONE, 2012, v. 7, n. 2, p. 1, doi. 10.1371/journal.pone.0031358

By:

Degui Zhi;
Rui Chen

Publication type:

Article

Expression Signature of IFN/STAT1 Signaling Genes Predicts Poor Survival Outcome in Glioblastoma Multiforme in a Subtype-Specific Manner.

Published in:

PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0029653

By:

Duarte, Christine W.;
Willey, Christopher D.;
Degui Zhi;
Xiangqin Cui;
Harris, Jacqueline J.;
Vaughan, Laura Kelly;
Mehta, Tapan;
McCubrey, Raymond O.;
Khodarev, Nikolai N.;
Weichselbaum, Ralph R.;
Gillespie, G. Yancey

Publication type:

Article

Statistical Quantification of Methylation Levels by Next-Generation Sequencing.

Published in:

PLoS ONE, 2011, v. 6, n. 6, p. 1, doi. 10.1371/journal.pone.0021034

By:

Guodong Wu;
Nengjun Yi;
Absher, Devin;
Degui Zhi

Publication type:

Article

iDASH secure genome analysis competition 2018: blockchain genomic data access logging, homomorphic encryption on GWAS, and DNA segment searching.

Published in:

2020

By:

Kuo, Tsung-Ting;
Jiang, Xiaoqian;
Tang, Haixu;
Wang, XiaoFeng;
Bath, Tyler;
Bu, Diyue;
Wang, Lei;
Harmanci, Arif;
Zhang, Shaojie;
Zhi, Degui;
Sofia, Heidi J.;
Ohno-Machado, Lucila

Publication type:

Editorial

A PheWAS study of a large observational epidemiological cohort of African Americans from the REGARDS study.

Published in:

BMC Medical Genomics, 2019, v. 12, n. 1, p. 1, doi. 10.1186/s12920-018-0462-7

By:

Zhao, Xueyan;
Geng, Xin;
Srinivasasainagendra, Vinodh;
Chaudhary, Ninad;
Judd, Suzanne;
Wadley, Virginia;
Gutiérrez, Orlando M.;
Wang, Henry;
Lange, Ethan M.;
Lange, Leslie A.;
Woo, Daniel;
Unverzagt, Frederick W.;
Safford, Monika;
Cushman, Mary;
Limdi, Nita;
Quarells, Rakale;
Arnett, Donna K.;
Irvin, Marguerite R.;
Zhi, Degui

Publication type:

Article

The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: genomics meets medicine.

Published in:

2019

By:

Zhi, Degui;
Zhao, Zhongming;
Li, Fuhai;
Wu, Zhijin;
Liu, Xiaoming;
Wang, Kai

Publication type:

Editorial

RAFFI: Accurate and fast familial relationship inference in large scale biobank studies using RaPID.

Published in:

PLoS Genetics, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pgen.1009315

By:

Naseri, Ardalan;
Shi, Junjie;
Lin, Xihong;
Zhang, Shaojie;
Zhi, Degui

Publication type:

Article

Association of Body Mass Index with DNA Methylation and Gene Expression in Blood Cells and Relations to Cardiometabolic Disease: A Mendelian Randomization Approach.

Published in:

2017

By:

Mendelson, Michael M.;
Marioni, Riccardo E.;
Joehanes, Roby;
Liu, Chunyu;
Hedman, Åsa K.;
Aslibekyan, Stella;
Demerath, Ellen W.;
Guan, Weihua;
Zhi, Degui;
Yao, Chen;
Huan, Tianxiao;
Willinger, Christine;
Chen, Brian;
Courchesne, Paul;
Multhaup, Michael;
Irvin, Marguerite R.;
Cohain, Ariella;
Schadt, Eric E.;
Grove, Megan L.;
Bressler, Jan

Publication type:

journal article

A Folding-Docking-Affinity framework for protein-ligand binding affinity prediction.

Published in:

Communications Chemistry, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42004-025-01506-1

By:

Wu, Ming-Hsiu;
Xie, Ziqian;
Zhi, Degui

Publication type:

Article

Representation of EHR data for predictive modeling: a comparison between UMLS and other terminologies.

Published in:

2020

By:

Rasmy, Laila;
Tiryaki, Firat;
Zhou, Yujia;
Xiang, Yang;
Tao, Cui;
Xu, Hua;
Zhi, Degui

Publication type:

journal article

Network context matters: graph convolutional network model over social networks improves the detection of unknown HIV infections among young men who have sex with men.

Published in:

2019

By:

Xiang, Yang;
Fujimoto, Kayo;
Schneider, John;
Jia, Yuxi;
Zhi, Degui;
Tao, Cui

Publication type:

journal article

Lipid changes due to fenofibrate treatment are not associated with changes in DNA methylation patterns in the GOLDN study.

Published in:

Frontiers in Genetics, 2015, p. 1, doi. 10.3389/fgene.2015.00304

By:

Das, Mithun;
Irvin, M. Ryan;
Jin Sha;
Aslibekyan, Stella;
Hidalgo, Bertha;
Perry, Rodney T.;
Degui Zhi;
Tiwari, Hemant K.;
Absher, Devin;
Ordovas, Jose M.;
Arnett, Donna K.;
Prata, Maria J.;
Pearson, John Frederick

Publication type:

Article

A hidden Markov model for haplotype inference for present-absent data of clustered genes using identified haplotypes and haplotype patterns.

Published in:

Frontiers in Genetics, 2014, v. 5, p. 1, doi. 10.3389/fgene.2014.00267

By:

Jihua Wu;
Guo-Bo Chen;
Degui Zhi;
Nianjun Liu;
Kui Zhang

Publication type:

Article

A hidden Markov model for haplotype inference for present-absent data of clustered genes using identified haplotypes and haplotype patterns.

Published in:

Frontiers in Genetics, 2014, v. 5, p. 1, doi. 10.3389/fgene.2014.00267

By:

Jihua Wu;
Guo-Bo Chen;
Degui Zhi;
Nianjun Liu;
Kui Zhang

Publication type:

Article

Deep sequencing of RYR3 gene identifies rare and common variants associated with increased carotid intima-media thickness (cIMT) in HIV-infected individuals.

Published in:

Journal of Human Genetics, 2015, v. 60, n. 2, p. 63, doi. 10.1038/jhg.2014.104

By:

Zhi, Degui;
Shendre, Aditi;
Scherzer, Rebecca;
Irvin, Marguerite R;
Perry, Rodney T;
Levy, Shawn;
Arnett, Donna K;
Grunfeld, Carl;
Shrestha, Sadeep

Publication type:

Article

Epigenome-wide association study (EWAS) of BMI, BMI change and waist circumference in African American adults identifies multiple replicated loci.

Published in:

Human Molecular Genetics, 2015, v. 24, n. 15, p. 4464, doi. 10.1093/hmg/ddv161

By:

Demerath, Ellen W.;
Guan, Weihua;
Grove, Megan L.;
Aslibekyan, Stella;
Mendelson, Michael;
Yi-Hui Zhou;
Hedman, Åsa K.;
Sandling, Johanna K.;
Li-An Li;
Irvin, Marguerite R.;
Degui Zhi;
Deloukas, Panos;
Liming Liang;
Chunyu Liu;
Bressler, Jan;
Spector, Tim D.;
North, Kari;
Yun Li;
Absher, Devin M.;
Levy, Daniel

Publication type:

Article

Brain imaging endophenotypes by unsupervised deep learning.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2023, v. 19, p. 1, doi. 10.1002/alz.074788

By:

Zhi, Degui

Publication type:

Article

Vasopressor treatment and mortality following nontraumatic subarachnoid hemorrhage: a nationwide electronic health record analysis.

Published in:

Neurosurgical Focus, 2020, v. 48, n. 5, p. 1, doi. 10.3171/2020.2.FOCUS191002

By:

Williams, George;
Maroufy, Vahed;
Rasmy, Laila;
Brown, Derek;
Duo Yu;
Hai Zhu;
Talebi, Yashar;
Xueying Wang;
Thomas, Emy;
Gen Zhu;
Yaseen, Ashraf;
Miao, Hongyu;
Novelo, Luis Leon;
Degui Zhi;
DeSantis, Stacia M.;
Zhu, Hongjian;
Yamal, Jose-Miguel;
Aguilar, David;
Hulin Wu

Publication type:

Article

Gravidas with class III obesity: evaluating the abdominal skin microbiota above and below the panniculus (.).

Published in:

2016

By:

Edwards, Rodney K.;
Kumar, Ranjit;
Zhi, Degui;
Szychowski, Jeffrey;
Subramaniam, Akila;
Lefkowitz, Elliot J.;
Morrow, Casey

Publication type:

journal article

Author Correction: Identification of donor microbe species that colonize and persist long term in the recipient after fecal transplant for recurrent Clostridium difficile.

Published in:

2017

By:

Kumar, Ranjit;
Yi, Nengjun;
Zhi, Degui;
Eipers, Peter;
Goldsmith, Kelly T.;
Dixon, Paula;
Crossman, David K.;
Crowley, Michael R.;
Lefkowitz, Elliot J.;
Rodriguez, J. Martin;
Morrow, Casey D.

Publication type:

Correction Notice

Identification of donor microbe species that colonize and persist long term in the recipient after fecal transplant for recurrent Clostridium difficile.

Published in:

NPJ Biofilms & Microbiomes, 2017, v. 3, n. 1, p. N.PAG, doi. 10.1038/s41522-017-0020-7

By:

Kumar, Ranjit;
Yi, Nengjun;
Zhi, Degui;
Eipers, Peter;
Goldsmith, Kelly T.;
Dixon, Paula;
Crossman, David K.;
Crowley, Michael R.;
Lefkowitz, Elliot J.;
Rodriguez, J. Martin;
Morrow, Casey D.

Publication type:

Article

Genome-wide admixture and association study of subclinical atherosclerosis in the Women’s Interagency HIV Study (WIHS).

Published in:

PLoS ONE, 2017, v. 12, n. 12, p. 1, doi. 10.1371/journal.pone.0188725

By:

Shendre, Aditi;
Wiener, Howard W.;
Irvin, Marguerite R.;
Aouizerat, Bradley E.;
Overton, Edgar T.;
Lazar, Jason;
Liu, Chenglong;
Hodis, Howard N.;
Limdi, Nita A.;
Weber, Kathleen M.;
Gange, Stephen J.;
Zhi, Degui;
Floris-Moore, Michelle A.;
Ofotokun, Ighovwerha;
Qi, Qibin;
Hanna, David B.;
Kaplan, Robert C.;
Shrestha, Sadeep

Publication type:

Article

P-smoother: efficient PBWT smoothing of large haplotype panels.

Published in:

Bioinformatics Advances, 2022, v. 2, n. 1, p. 1, doi. 10.1093/bioadv/vbac045

By:

Yue, William;
Naseri, Ardalan;
Wang, Victor;
Shakya, Pramesh;
Zhang, Shaojie;
Zhi, Degui

Publication type:

Article

PRKCZ methylation is associated with sunlight exposure in a North American but not a Mediterranean population.

Published in:

Chronobiology International: The Journal of Biological & Medical Rhythm Research, 2014, v. 31, n. 9, p. 1034, doi. 10.3109/07420528.2014.944266

By:

Aslibekyan, Stella;
Dashti, Hassan S.;
Tanaka, Toshiko;
Sha, Jin;
Ferrucci, Luigi;
Zhi, Degui;
Bandinelli, Stefania;
Borecki, Ingrid B.;
Absher, Devin M.;
Arnett, Donna K.;
Ordovas, Jose M.

Publication type:

Article

Predicting gene expression using DNA methylation in three human populations.

Published in:

PeerJ, 2019, p. 1, doi. 10.7717/peerj.6757

By:

Huan Zhong;
Soyeon Kim;
Degui Zhi;
Xiangqin Cui

Publication type:

Article

Genome‐wide meta‐analysis of SNP and antihypertensive medication interactions on left ventricular traits in African Americans.

Published in:

Molecular Genetics & Genomic Medicine, 2019, v. 7, n. 10, p. N.PAG, doi. 10.1002/mgg3.788

By:

Do, Anh N.;
Zhao, Wei;
Baldridge, Abigail S.;
Raffield, Laura M.;
Wiggins, Kerri L.;
Shah, Sanjiv J.;
Aslibekyan, Stella;
Tiwari, Hemant K.;
Limdi, Nita;
Zhi, Degui;
Sitlani, Colleen M.;
Taylor, Kent D.;
Psaty, Bruce M.;
Sotoodehnia, Nona;
Brody, Jennifer A.;
Rasmussen‐Torvik, Laura J.;
Lloyd‐Jones, Donald;
Lange, Leslie A.;
Wilson, James G.;
Smith, Jennifer A.

Publication type:

Article

Advancing Pancreatic Cancer Prediction with a Next Visit Token Prediction Head on Top of Med-BERT.

Published in:

Cancers, 2025, v. 17, n. 3, p. 516, doi. 10.3390/cancers17030516

By:

He, Jianping;
Rasmy, Laila;
Zhi, Degui;
Tao, Cui

Publication type:

Article

Metabolic and inflammatory biomarkers are associated with epigenetic aging acceleration estimates in the GOLDN study.

Published in:

Clinical Epigenetics, 2018, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13148-018-0481-4

By:

Irvin, Marguerite R.;
Aslibekyan, Stella;
Do, Anh;
Zhi, Degui;
Hidalgo, Bertha;
Claas, Steven A.;
Srinivasasainagendra, Vinodh;
Horvath, Steve;
Tiwari, Hemant K.;
Absher, Devin M.;
Arnett, Donna K.

Publication type:

Article

Epigenome-wide association study of metabolic syndrome in African-American adults.

Published in:

Clinical Epigenetics, 2018, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13148-018-0483-2

By:

Akinyemiju, Tomi;
Do, Anh N.;
Patki, Amit;
Aslibekyan, Stella;
Zhi, Degui;
Hidalgo, Bertha;
Tiwari, Hemant K.;
Absher, Devin;
Geng, Xin;
Arnett, Donna K.;
Irvin, Marguerite R.

Publication type:

Article

A genome-wide association study in catfish reveals the presence of functional hubs of related genes within QTLs for columnaris disease resistance.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1409-4

By:

Xin Geng;
Jin Sha;
Shikai Liu;
Lisui Bao;
Jiaren Zhang;
Ruijia Wang;
Jun Yao;
Chao Li;
Jianbin Feng;
Fanyue Sun;
Luyang Sun;
Chen Jiang;
Yu Zhang;
Ailu Chen;
Dunham, Rex;
Degui Zhi;
Zhanjiang Liu

Publication type:

Article

Personalized genealogical history of UK individuals inferred from biobank-scale IBD segments.

Published in:

BMC Biology, 2021, v. 19, n. 1, p. 1, doi. 10.1186/s12915-021-00964-y

By:

Naseri, Ardalan;
Tang, Kecong;
Geng, Xin;
Shi, Junjie;
Zhang, Jing;
Shakya, Pramesh;
Liu, Xiaoming;
Zhang, Shaojie;
Zhi, Degui

Publication type:

Article

APOL1 nephropathy risk variants are associated with altered high-density lipoprotein profiles in African Americans.

Published in:

Nephrology Dialysis Transplantation, 2016, v. 31, n. 4, p. 602, doi. 10.1093/ndt/gfv229

By:

Gutiérrez, Orlando M.;
Judd, Suzanne E.;
Irvin, Marguerite R.;
Degui Zhi;
Limdi, Nita;
Palmer, Nicholette D.;
Rich, Stephen S.;
Sale, Michèle M.;
Freedman, Barry I.

Publication type:

Article

Unsupervised deep representation learning enables phenotype discovery for genetic association studies of brain imaging.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06096-7

By:

Patel, Khush;
Xie, Ziqian;
Yuan, Hao;
Islam, Sheikh Muhammad Saiful;
Xie, Yaochen;
He, Wei;
Zhang, Wanheng;
Gottlieb, Assaf;
Chen, Han;
Giancardo, Luca;
Knaack, Alexander;
Fletcher, Evan;
Fornage, Myriam;
Ji, Shuiwang;
Zhi, Degui

Publication type:

Article

Contrastive learning with transformer for adverse endpoint prediction in patients on DAPT post-coronary stent implantation.

Published in:

Frontiers in Cardiovascular Medicine, 2025, p. 1, doi. 10.3389/fcvm.2024.1460354

By:

Li, Fang;
Sun, Zenan;
abdelhameed, Ahmed;
Duan, Tiehang;
Rasmy, Laila;
Hu, Xinyue;
He, Jianping;
Dang, Yifang;
Feng, Jingna;
Li, Jianfu;
Wang, Yichen;
Lyu, Tianchen;
Braun, Naomi;
Pham, Si;
Gharacholou, Michael;
Fairweather, DeLisa;
Zhi, Degui;
Bian, Jiang;
Tao, Cui

Publication type:

Article

Local Ancestry and Clinical Cardiovascular Events Among African Americans From the Atherosclerosis Risk in Communities Study.

Published in:

2017

By:

Shendre, Aditi;
Irvin, Marguerite R.;
Wiener, Howard;
Zhi, Degui;
Limdi, Nita A.;
Overton, Edgar T.;
Shrestha, Sadeep

Publication type:

journal article