Works by DeLuca, David S.

Results: 27

Human Bronchial Epithelial Cell Transcriptome Changes in Response to Serum from Patients with Different Status of Inflammation.

Published in:

Lung (0341-2040), 2024, v. 202, n. 2, p. 157, doi. 10.1007/s00408-024-00679-1

By:

Sivaraman, Kokilavani;
Liu, Bin;
Martinez-Delgado, Beatriz;
Held, Julia;
Büttner, Manuela;
Illig, Thomas;
Volland, Sonja;
Gomez-Mariano, Gema;
Jedicke, Nils;
Yevsa, Tetyana;
Welte, Tobias;
DeLuca, David S.;
Wrenger, Sabine;
Olejnicka, Beata;
Janciauskiene, Sabina

Publication type:

Article

Human leukocyte antigen typing using a knowledge base coupled with a high-throughput oligonucleotide probe array analysis.

Published in:

Frontiers in Immunology, 2014, v. 5, p. 1, doi. 10.3389/fimmu.2014.00597

By:

Guang Lan Zhang;
Keskin, Derin B.;
Hsin-Nan Lin;
Hong Huang Lin;
DeLuca, David S.;
Leppanen, Scott;
Milford, Edgar L.;
Reinherz, Ellis L.;
Brusic, Vladimir

Publication type:

Article

SOX2 and p63 colocalize at genetic loci in squamous cell carcinomas.

Published in:

Journal of Clinical Investigation, 2014, v. 124, n. 4, p. 1636, doi. 10.1172/JCI71545

By:

Hideo Watanabe;
Qiuping Ma;
Shouyong Peng;
Adelmant, Guillaume;
Swain, Danielle;
Wenyu Song;
Fox, Cameron;
Francis, Joshua M.;
Chandra Sekhar Pedamallu;
DeLuca, David S.;
Brooks, Angela N.;
Su Wang;
Jianwen Que;
Rustgi, Anil K.;
Kwok-kin Wong;
Ligon, Keith L.;
Liu, X. Shirley;
Marto, Jarrod A.;
Meyerson, Matthew;
Bass, Adam J.

Publication type:

Article

Pleural CD14<sup>+</sup> monocytes/macrophages of healthy adolescents show a high expression of metallothionein family genes.

Published in:

European Journal of Immunology, 2023, v. 53, n. 1, p. 1, doi. 10.1002/eji.202250019

By:

Schukfeh, Nagoud;
Liu, Bin;
DeLuca, David S.;
Tumpara, Srinu;
Nikolin, Christoph;
Immenschuh, Stephan;
Ure, Benno M.;
Kuebler, Joachim F.;
Welte, Tobias;
Viemann, Dorothee;
Janciauskiene, Sabina M.;
Vieten, Gertrud

Publication type:

Article

IL‐17 regulates DC migration to the peribronchial LNs and allergen presentation in experimental allergic asthma.

Published in:

European Journal of Immunology, 2020, v. 50, n. 7, p. 1019, doi. 10.1002/eji.201948409

By:

Jirmo, Adan Chari;
Busse, Mandy;
Happle, Christine;
Skuljec, Jelena;
Dalüge, Kathleen;
Habener, Anika;
Grychtol, Ruth;
DeLuca, David S.;
Breiholz, Oliver D.;
Prinz, Immo;
Hansen, Gesine

Publication type:

Article

Filtration and Normalization of Sequencing Read Data in Whole-Metagenome Shotgun Samples.

Published in:

PLoS ONE, 2016, v. 11, n. 10, p. 1, doi. 10.1371/journal.pone.0165015

By:

Chouvarine, Philippe;
Wiehlmann, Lutz;
Moran Losada, Patricia;
DeLuca, David S.;
Tümmler, Burkhard

Publication type:

Article

Loss of Serpina1 in Mice Leads to Altered Gene Expression in Inflammatory and Metabolic Pathways.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 18, p. N.PAG, doi. 10.3390/ijms231810425

By:

Meghadri, Sri Harsha;
Martinez-Delgado, Beatriz;
Ostermann, Lena;
Gomez-Mariano, Gema;
Perez-Luz, Sara;
Tumpara, Srinu;
Wrenger, Sabine;
DeLuca, David S.;
Maus, Ulrich A.;
Welte, Tobias;
Janciauskiene, Sabina

Publication type:

Article

MicroRNA-449a Inhibits Triple Negative Breast Cancer by Disturbing DNA Repair and Chromatid Separation.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 9, p. 5131, doi. 10.3390/ijms23095131

By:

Vajen, Beate;
Bhowmick, Rahul;
Greiwe, Luisa;
Schäffer, Vera;
Eilers, Marlies;
Reinkens, Thea;
Stalke, Amelie;
Schmidt, Gunnar;
Fiedler, Jan;
Thum, Thomas;
DeLuca, David S.;
Hickson, Ian D.;
Schlegelberger, Brigitte;
Illig, Thomas;
Skawran, Britta

Publication type:

Article

A comparison of curated gene sets versus transcriptomics-derived gene signatures for detecting pathway activation in immune cells.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3366-4

By:

Liu, Bin;
Lindner, Patrick;
Jirmo, Adan Chari;
Maus, Ulrich;
Illig, Thomas;
DeLuca, David S.

Publication type:

Article

SERPINA1 gene polymorphisms in a population‐based ALSPAC cohort.

Published in:

Pediatric Pulmonology, 2019, v. 54, n. 9, p. 1474, doi. 10.1002/ppul.24422

By:

DeLuca, David S.;
Poluzioroviene, Edita;
Taminskiene, Vaida;
Wrenger, Sabine;
Utkus, Algirdas;
Valiulis, Algirdas;
Alasevičius, Tomas;
Henderson, John;
Bush, Andrew;
Welte, Tobias;
Janciauskiene, Sabina;
Valiulis, Arunas

Publication type:

Article

Complications and risk factors in pediatric bronchoscopy in a tertiary pediatric respiratory center.

Published in:

Pediatric Pulmonology, 2018, v. 53, n. 5, p. 619, doi. 10.1002/ppul.23957

By:

Carlens, Julia;
Fuge, Jan;
Price, Timothy;
DeLuca, David S.;
Price, Mareike;
Hansen, Gesine;
Schwerk, Nicolaus

Publication type:

Article

The Delivery of α1-Antitrypsin Therapy Through Transepidermal Route: Worthwhile to Explore.

Published in:

Frontiers in Pharmacology, 2020, v. 11, p. 1, doi. 10.3389/fphar.2020.00983

By:

Tumpara, Srinu;
Martinez-Delgado, Beatriz;
Gomez-Mariano, Gema;
Liu, Bin;
DeLuca, David S.;
Korenbaum, Elena;
Jonigk, Danny;
Jugert, Frank;
Wurm, Florian M.;
Wurm, Maria J.;
Welte, Tobias;
Janciauskiene, Sabina

Publication type:

Article

RNA-SeQC: RNA-seq metrics for quality control and process optimization.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1530, doi. 10.1093/bioinformatics/bts196

By:

DeLuca, David S.;
Levin, Joshua Z.;
Sivachenko, Andrey;
Fennell, Timothy;
Nazaire, Marc-Danie;
Williams, Chris;
Reich, Michael;
Winckler, Wendy;
Getz, Gad

Publication type:

Article

High-throughput minor histocompatibility antigen prediction.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2411, doi. 10.1093/bioinformatics/btp404

By:

DeLuca, David S.;
Eiz-Vesper, Britta;
Ladas, Nektarios;
Khattab, Barbara Anna-Maria;
Blasczyk, Rainer

Publication type:

Article

Aberrant intracellular trafficking of a variant B glycosyltransferase.

Published in:

Transfusion, 2008, v. 48, n. 9, p. 1898, doi. 10.1111/j.1537-2995.2008.01782.x

By:

Seltsam, Axel;
Grüger, Daniela;
Just, Burkhard;
Figueiredo, Constança;
Gupta, Christa Das;
DeLuca, David S.;
Blasczyk, Rainer

Publication type:

Article

The molecular diversity of Sema7A, the semaphorin that carries the JMH blood group antigens.

Published in:

Transfusion, 2007, v. 47, n. 1, p. 133, doi. 10.1111/j.1537-2995.2007.01076.x

By:

Seltsam, Axel;
Strigens, Susanne;
Levene, Cyril;
Yahalom, Vered;
Moulds, Marilyn;
Moulds, John J.;
Hustinx, Hein;
Weisbach, Volker;
Figueroa, Dolores;
Bade-Doeding, Christina;
DeLuca, David S.;
Blasczyk, Rainer

Publication type:

Article

PB1-F2 Finder: scanning influenza sequences for PB1-F2 encoding RNA segments.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S6

By:

DeLuca, David S.;
Keskin, Derin B.;
Guang Lan Zhang;
Reinherz, Ellis L.;
Brusic, Vladimir

Publication type:

Article

Lung Adenocarcinoma Cell Sensitivity to Chemotherapies: A Spotlight on Lipid Droplets and SREBF1 Gene.

Published in:

Cancers, 2022, v. 14, n. 18, p. N.PAG, doi. 10.3390/cancers14184454

By:

Gründing, Anna Ricarda;
Schneider, Marc A.;
Richtmann, Sarah;
Kriegsmann, Mark;
Winter, Hauke;
Martinez-Delgado, Beatriz;
Varona, Sarai;
Liu, Bin;
DeLuca, David S.;
Held, Julia;
Wrenger, Sabine;
Muley, Thomas;
Meister, Michael;
Welte, Tobias;
Janciauskiene, Sabina

Publication type:

Article

Smokers with COPD Show a Shift in Energy and Nitrogen Metabolism at Rest and During Exercise.

Published in:

International Journal of COPD, 2020, v. 15, p. 1, doi. 10.2147/COPD.S217474

By:

Holz, Olaf;
DeLuca, David S;
Roepcke, Stefan;
Illig, Thomas;
Weinberger, Klaus M;
Schudt, Christian;
Hohlfeld, Jens M

Publication type:

Article

Corrigendum: Comparative analysis of RNA sequencing methods for degraded or low-input samples.

Published in:

Nature Methods, 2014, v. 11, n. 2, p. 210, doi. 10.1038/nmeth0214-210e

By:

Adiconis, Xian;
Borges-Rivera, Diego;
Satija, Rahul;
DeLuca, David S;
Busby, Michele A;
Berlin, Aaron M;
Sivachenko, Andrey;
Thompson, Dawn Anne;
Wysoker, Alec;
Fennell, Timothy;
Gnirke, Andreas;
Pochet, Nathalie;
Regev, Aviv;
Levin, Joshua Z

Publication type:

Article

Comparative analysis of RNA sequencing methods for degraded or low-input samples.

Published in:

Nature Methods, 2013, v. 10, n. 7, p. 623, doi. 10.1038/nmeth.2483

By:

Adiconis, Xian;
Borges-Rivera, Diego;
Satija, Rahul;
DeLuca, David S;
Busby, Michele A;
Berlin, Aaron M;
Sivachenko, Andrey;
Thompson, Dawn Anne;
Wysoker, Alec;
Fennell, Timothy;
Gnirke, Andreas;
Pochet, Nathalie;
Regev, Aviv;
Levin, Joshua Z

Publication type:

Article

Molecular profiling of rheumatoid arthritis patients reveals an association between innate and adaptive cell populations and response to anti-tumor necrosis factor.

Published in:

Arthritis Research & Therapy, 2019, v. 21, n. 1, p. N.PAG, doi. 10.1186/s13075-019-1999-3

By:

Farutin, Victor;
Prod'homme, Thomas;
McConnell, Kevin;
Washburn, Nathaniel;
Halvey, Patrick;
Etzel, Carol J.;
Guess, Jamey;
Duffner, Jay;
Getchell, Kristen;
Meccariello, Robin;
Gutierrez, Bryan;
Honan, Christopher;
Zhao, Ganlin;
Cilfone, Nicholas A.;
Gunay, Nur Sibel;
Hillson, Jan L.;
DeLuca, David S.;
Saunders, Katherine C.;
Pappas, Dimitrios A.;
Greenberg, Jeffrey D.

Publication type:

Article

A Pan-Cancer Analysis of Transcriptome Changes Associated with Somatic Mutations in <i>U2AF1</i> Reveals Commonly Altered Splicing Events.

Published in:

PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0087361

By:

Brooks, Angela N.;
Choi, Peter S.;
de Waal, Luc;
Sharifnia, Tanaz;
Imielinski, Marcin;
Saksena, Gordon;
Pedamallu, Chandra Sekhar;
Sivachenko, Andrey;
Rosenberg, Mara;
Chmielecki, Juliann;
Lawrence, Michael S.;
DeLuca, David S.;
Getz, Gad;
Meyerson, Matthew

Publication type:

Article

Amino acid 95 causes strong alteration of peptide position PΩ in HLA-B*41 variants.

Published in:

Immunogenetics, 2007, v. 59, n. 4, p. 253, doi. 10.1007/s00251-007-0197-7

By:

Bade-Doeding, Christina;
DeLuca, David S.;
Seltsam, Axel;
Blasczyk, Rainer;
Eiz-Vesper, Britta

Publication type:

Article

A modular concept of HLA for comprehensive peptide binding prediction.

Published in:

Immunogenetics, 2007, v. 59, n. 1, p. 25, doi. 10.1007/s00251-006-0176-4

By:

DeLuca, David S.;
Khattab, Barbara;
Blasczyk, Rainer

Publication type:

Article

Novel sequence feature variant type analysis of the HLA genetic association in systemic sclerosis.

Published in:

Human Molecular Genetics, 2010, v. 19, n. 4, p. 707, doi. 10.1093/hmg/ddp521

By:

Karp, David R.;
Marthandan, Nishanth;
Marsh, Steven G.E.;
Ahn, Chul;
Arnett, Frank C.;
DeLuca, David S.;
Diehl, Alexander D.;
Dunivin, Raymond;
Eilbeck, Karen;
Feolo, Michael;
Guidry, Paula A.;
Helmberg, Wolfgang;
Lewis, Suzanna;
Mayes, Maureen D.;
Mungall, Chris;
Natale, Darren A.;
Peters, Bjoern;
Petersdorf, Effie;
Reveille, John D.;
Smith, Barry

Publication type:

Article

A variational autoencoder trained with priors from canonical pathways increases the interpretability of transcriptome data.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011198

By:

Liu, Bin;
Rosenhahn, Bodo;
Illig, Thomas;
DeLuca, David S.

Publication type:

Article