Works by De Valpine, Perry

Results: 52

A pathway for multivariate analysis of ecological communities using copulas.

Published in:

Ecology & Evolution (20457758), 2019, v. 9, n. 6, p. 3276, doi. 10.1002/ece3.4948

By:

Anderson, Marti J.;
de Valpine, Perry;
Punnett, Andrew;
Miller, Arden E.

Publication type:

Article

A cloudy forecast for species distribution models: Predictive uncertainties abound for California birds after a century of climate and land‐use change.

Published in:

Global Change Biology, 2024, v. 30, n. 1, p. 1, doi. 10.1111/gcb.17019

By:

Clare, John D. J.;
de Valpine, Perry;
Moanga, Diana A.;
Tingley, Morgan W.;
Beissinger, Steven R.

Publication type:

Article

A century of climate and land‐use change cause species turnover without loss of beta diversity in California's Central Valley.

Published in:

Global Change Biology, 2018, v. 24, n. 12, p. 5882, doi. 10.1111/gcb.14458

By:

MacLean, Sarah A.;
Rios Dominguez, Andrea F.;
de Valpine, Perry;
Beissinger, Steven R.

Publication type:

Article

State‐space models for ecological time‐series data: Practical model‐fitting.

Published in:

Methods in Ecology & Evolution, 2023, v. 14, n. 1, p. 26, doi. 10.1111/2041-210X.13833

By:

Newman, Ken;
King, Ruth;
Elvira, Víctor;
de Valpine, Perry;
McCrea, Rachel S.;
Morgan, Byron J. T.

Publication type:

Article

The fire frequency analysis branch of the pyrostatistics tree: sampling decisions and censoring in fire interval data.

Published in:

Environmental & Ecological Statistics, 2009, v. 16, n. 2, p. 271, doi. 10.1007/s10651-007-0088-y

By:

Moritz, Max A.;
Moody, Tadashi J.;
Miles, Lori J.;
Smith, Matthew M.;
de Valpine, Perry

Publication type:

Article

To rarefy or not to rarefy: robustness and efficiency trade-offs of rarefying microbiome data.

Published in:

Bioinformatics, 2022, v. 38, n. 9, p. 2389, doi. 10.1093/bioinformatics/btac127

By:

Hong, Johnny;
Karaoz, Ulas;
Valpine, Perry de;
Fithian, William

Publication type:

Article

Computational Strategies and Estimation Performance With Bayesian Semiparametric Item Response Theory Models.

Published in:

Journal of Educational & Behavioral Statistics, 2023, v. 48, n. 2, p. 147, doi. 10.3102/10769986221136105

By:

Paganin, Sally;
Paciorek, Christopher J.;
Wehrhahn, Claudia;
Rodríguez, Abel;
Rabe-Hesketh, Sophia;
de Valpine, Perry

Publication type:

Article

Generalized additive models reveal among-stand variation in live tree biomass equations.

Published in:

Canadian Journal of Forest Research, 2021, v. 51, n. 4, p. 546, doi. 10.1139/cjfr-2020-0219

By:

Levine, Jacob;
de Valpine, Perry;
Battles, John

Publication type:

Article

Continental water recycling and H218O concentrations.

Published in:

Geophysical Research Letters, 1993, v. 20, n. 20, p. 2215, doi. 10.1029/93GL01781

By:

Koster, Randal D.;
de Valpine, D. Perry;
Jouzel, Jean

Publication type:

Article

Comparing N-mixture models and GLMMs for relative abundance estimation in a citizen science dataset.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-16368-z

By:

Goldstein, Benjamin R.;
de Valpine, Perry

Publication type:

Article

FITTING POPULATION MODELS INCORPORATING PROCESS NOISE AND OBSERVATION ERROR.

Published in:

Ecological Monographs, 2002, v. 72, n. 1, p. 57, doi. 10.1890/0012-9615(2002)072[0057:FPMIPN]2.0.CO;2

By:

de Valpine, Perry;
Hastings, Alan

Publication type:

Article

Higher incidence of high‐severity fire in and near industrially managed forests.

Published in:

Frontiers in Ecology & the Environment, 2022, v. 20, n. 7, p. 397, doi. 10.1002/fee.2499

By:

Levine, Jacob I;
Collins, Brandon M;
Steel, Zachary L;
de Valpine, Perry;
Stephens, Scott L

Publication type:

Article

Fast maximum likelihood estimation for general hierarchical models.

Published in:

Journal of Applied Statistics, 2025, v. 52, n. 3, p. 595, doi. 10.1080/02664763.2024.2383284

By:

Hong, Johnny;
Stoudt, Sara;
de Valpine, Perry

Publication type:

Article

Commentary to: a cross-validation-based approach for delimiting reliable home range estimates.

Published in:

2018

By:

Dougherty, Eric R.;
de Valpine, Perry;
Carlson, Colin J.;
Blackburn, Jason K.;
Getz, Wayne M.

Publication type:

Letter

Estimating tree growth from complex forest monitoring data.

Published in:

Ecological Applications, 2013, v. 23, n. 6, p. 1288, doi. 10.1890/12-0504.1

By:

Eitzel, Melissa;
Battles, John;
York, Robert;
Knape, Jonas;
de Valpine, Perry

Publication type:

Article

Estimating spatially variable and density‐dependent survival using open‐population spatial capture–recapture models.

Published in:

Ecology, 2023, v. 104, n. 2, p. 1, doi. 10.1002/ecy.3934

By:

Milleret, Cyril;
Dey, Soumen;
Dupont, Pierre;
Brøseth, Henrik;
Turek, Daniel;
de Valpine, Perry;
Bischof, Richard

Publication type:

Article

A flexible and efficient Bayesian implementation of point process models for spatial capture–recapture data.

Published in:

Ecology, 2023, v. 104, n. 1, p. 1, doi. 10.1002/ecy.3887

By:

Zhang, Wei;
Chipperfield, Joseph D.;
Illian, Janine B.;
Dupont, Pierre;
Milleret, Cyril;
de Valpine, Perry;
Bischof, Richard

Publication type:

Article

Frequentist analysis of hierarchical models for population dynamics and demographic data.

Published in:

Journal of Ornithology, 2012, v. 152, p. 393, doi. 10.1007/s10336-010-0642-5

By:

de Valpine, Perry

Publication type:

Article

A simulation-approximation approach to sample size planning for high-dimensional classification studies.

Published in:

2009

By:

de Valpine P;
Bitter HM;
Brown MP;
Heller J;
de Valpine, Perry;
Bitter, Hans-Marcus;
Brown, Michael P S;
Heller, Jonathan

Publication type:

journal article

A simulation–approximation approach to sample size planning for high-dimensional classification studies.

Published in:

Biostatistics, 2009, v. 10, n. 3, p. 424, doi. 10.1093/biostatistics/kxp001

By:

DE VALPINE, PERRY;
BITTER, HANS-MARCUS;
BROWN, MICHAEL P. S.;
HELLER, JONATHAN

Publication type:

Article

Microclimate preferences during swarming and hibernation in the Townsend's big-eared bat, Corynorhinus townsendii.

Published in:

Journal of Mammalogy, 2010, v. 91, n. 5, p. 1242, doi. 10.1644/09-MAMM-A-288.1

By:

INGERSOLL, THOMAS E.;
NAVO, KIRK W.;
DE VALPINE, PERRY

Publication type:

Article

Population dynamics of an Arctiid caterpillar–tachinid parasitoid system using state-space models.

Published in:

Journal of Animal Ecology, 2010, v. 79, n. 3, p. 650, doi. 10.1111/j.1365-2656.2010.01664.x

By:

Karban, Richard;
de Valpine, Perry

Publication type:

Article

State-space likelihoods for nonlinear fisheries time-series.

Published in:

Canadian Journal of Fisheries & Aquatic Sciences, 2005, v. 62, n. 9, p. 1937, doi. 10.1139/F05-116

By:

De Valpine, Perry;
Hilborn, Ray

Publication type:

Article

Building integral projection models with nonindependent vital rates.

Published in:

Ecology & Evolution (20457758), 2022, v. 12, n. 3, p. 1, doi. 10.1002/ece3.8682

By:

Fung, Yik Leung;
Newman, Ken;
King, Ruth;
de Valpine, Perry

Publication type:

Article

No General Trend in Functional Diversity in Bird and Mammal Communities Despite Compositional Change.

Published in:

Global Ecology & Biogeography, 2025, v. 34, n. 1, p. 1, doi. 10.1111/geb.13950

By:

Norman, Kari E. A.;
de Valpine, Perry;
Boettiger, Carl

Publication type:

Article

Estimating population impacts via dynamic occupancy analysis of Before--After Control--Impact studies.

Published in:

Ecological Applications, 2012, v. 22, n. 4, p. 1389, doi. 10.1890/11-1669.1

By:

Popescu, Viorel D.;
De Valpine, Perry;
Tempel, Douglas;
Peery, M. Zachariah

Publication type:

Article

Synchrony of population dynamics of two vineyard arthropods occurs at multiple spatial and temporal scales.

Published in:

Ecological Applications, 2010, v. 20, n. 7, p. 1926, doi. 10.1890/09-0468.1

By:

de Valpine, Perry;
Scranton, Katherine;
Ohmart, Clifford P.

Publication type:

Article

Shared challenges and common ground for Bayesian and classical analysis of hierarchical statistical models.

Published in:

Ecological Applications, 2009, v. 19, n. 3, p. 584, doi. 10.1890/08-0562.1

By:

de Valpine, Perry

Publication type:

Article

Small-Scale Intraspecific Life History Variation in Herbivorous Spider Mites (Tetranychus pacificus) Is Associated with Host Plant Cultivar.

Published in:

PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0072980

By:

Scranton, Katherine;
Stavrinides, Menelaos;
Mills, Nicholas J.;
de Valpine, Perry

Publication type:

Article

Estimation of stage duration distributions and mortality under repeated cohort censuses.

Published in:

Biometrics, 2014, v. 70, n. 2, p. 346, doi. 10.1111/biom.12138

By:

Knape, Jonas;
Daane, Kent M.;
de Valpine, Perry

Publication type:

Article

Nested Adaptation of MCMC Algorithms.

Published in:

Bayesian Analysis, 2020, v. 15, n. 4, p. 1323, doi. 10.1214/19-BA1190

By:

Dao Nguyen;
de Valpine, Perry;
Atchade, Yves;
Turek, Daniel;
Michaud, Nicholas;
Paciorek, Christopher

Publication type:

Article

Automated Parameter Blocking for Efficient Markov Chain Monte Carlo Sampling.

Published in:

Bayesian Analysis, 2017, v. 12, n. 2, p. 465, doi. 10.1214/16-BA1008

By:

Turek, Daniel;
de Valpine, Perry;
Paciorek, Christopher J.;
Anderson-Bergman, Clifford

Publication type:

Article

Drought influences habitat associations and abundances of birds in California's Central Valley.

Published in:

Diversity & Distributions, 2024, v. 30, n. 5, p. 1, doi. 10.1111/ddi.13827

By:

Goldstein, Benjamin R.;
Furnas, Brett J.;
Calhoun, Kendall L.;
Larsen, Ashley E.;
Karp, Daniel S.;
de Valpine, Perry

Publication type:

Article

Monte Carlo State-Space Likelihoods by Weighted Posterior Kernal Density Estimation.

Published in:

Journal of the American Statistical Association, 2004, v. 99, n. 466, p. 523, doi. 10.1198/016214504000000476

By:

De Valpine, Perry

Publication type:

Article

Proximity of restored hedgerows interacts with local floral diversity and species' traits to shape long‐term pollinator metacommunity dynamics.

Published in:

Ecology Letters, 2019, v. 22, n. 7, p. 1048, doi. 10.1111/ele.13257

By:

Ponisio, Lauren C.;
de Valpine, Perry;
M'Gonigle, Leithen K.;
Kremen, Claire;
Haddad, Nick

Publication type:

Article

Are patterns of density dependence in the Global Population Dynamics Database driven by uncertainty about population abundance?

Published in:

Ecology Letters, 2012, v. 15, n. 1, p. 17, doi. 10.1111/j.1461-0248.2011.01702.x

By:

Knape, Jonas;
de Valpine, Perry

Publication type:

Article

Climate and edaphic controllers influence rhizosphere community assembly for a wild annual grass.

Published in:

Ecology, 2016, v. 97, n. 5, p. 1307, doi. 10.1890/15-0882.1

By:

Nuccio, ERIN E.;
ANDERSON-FURGESON, JAMES;
ESTERA, KATERINA Y.;
PETT-RIDGE, JENNIFER;
VALPINE, PERRY DE;
BRODIE, EOIN L.;
FIRESTONE, AND MARY K.

Publication type:

Article

Monte Carlo estimation of stage structured development from cohort data.

Published in:

Ecology, 2016, v. 97, n. 4, p. 992, doi. 10.1890/15-0942.1

By:

Knape, Jonas;
de Valpine, Perry

Publication type:

Article

An approximate Bayesian computation approach to parameter estimation in a stochastic stage-structured population model.

Published in:

Ecology, 2014, v. 95, n. 5, p. 1418, doi. 10.1890/13-1065.1

By:

Scranton, Katherine;
Knape, Jonas;
de Valpine, Perry

Publication type:

Article

The common sense of P values.

Published in:

2014

By:

de Valpine, Perry

Publication type:

Opinion

General models for resource use or other compositional count data using the Dirichlet-multinomial distribution.

Published in:

Ecology, 2013, v. 94, n. 12, p. 2678, doi. 10.1890/12-0416.1

By:

de Valpine, Perry;
Harmon-Threatt, Alexandra N.

Publication type:

Article

Using uncertainty estimates in analyses of population time series.

Published in:

Ecology, 2013, v. 94, n. 9, p. 2097, doi. 10.1890/12-0712.1

By:

Knape, Jonas;
Besbeas, Panagiotis;
de Valpine, Perry

Publication type:

Article

Fitting complex population models by combining particle filters with Markov chain Monte Carlo.

Published in:

Ecology, 2012, v. 93, n. 2, p. 256, doi. 10.1890/11-0797.1

By:

Knape, Jonas;
De Valpine, Perry

Publication type:

Article

A robust-design formulation of the incidence function model of metapopulation dynamics applied to two species of rails.

Published in:

Ecology, 2011, v. 92, n. 2, p. 462, doi. 10.1890/09-2402.1

By:

Risk, Benjamin B.;
De Valpine, Perry;
Beissinger, Steven R.

Publication type:

Article

Likelihood ridges and multimodality in population growth rate models.

Published in:

Ecology, 2009, v. 90, n. 8, p. 2313, doi. 10.1890/08-1461.1

By:

Polansky, Leo;
De Valpine, Perry;
Lloyd-Smith, James O.;
Getz, Wayne M.

Publication type:

Article

IS SPREAD OF INVASIVE SPECIES REGULATED? USING ECOLOGICAL THEORY TO INTERPRET STATISTICAL ANALYSIS.

Published in:

Ecology, 2008, v. 89, n. 9, p. 2377, doi. 10.1890/07-0090.1

By:

DE VALPINE, PERRY;
CUDDINGTON, KIM;
HOOPES, MARTHA F.;
LOCKWOOD, JULIE L.

Publication type:

Article

FIELD-SCALE ROLES OF DENSITY, TEMPERATURE, NITROGEN, AND PREDATION ON APHID POPULATION DYNAMICS.

Published in:

Ecology, 2008, v. 89, n. 2, p. 532, doi. 10.1890/06-1996.1

By:

de Valpine, Perry;
Rosenheim, Jay A.

Publication type:

Article

BETTER INFERENCES FROM POPULATION-DYNAMICS EXPERIMENTS USING MONTE CARLO STATE-SPACE LIKELIHOOD METHODS.

Published in:

Ecology, 2003, v. 84, n. 11, p. 3064, doi. 10.1890/02-0039

By:

Valpine, Perry de

Publication type:

Article

PLANT RESPONSES TO EXPERIMENTAL WARMING IN A MONTANE MEADOW.

Published in:

Ecology, 2001, v. 82, n. 3, p. 637, doi. 10.1890/0012-9658(2001)082[0637:PRTEWI]2.0.CO;2

By:

De Valpine, Perry;
Harte, John

Publication type:

Article

Computational Methods for Fast Bayesian Model Assessment via Calibrated Posterior p-values.

Published in:

Journal of Computational & Graphical Statistics, 2025, v. 34, n. 2, p. 462, doi. 10.1080/10618600.2024.2374585

By:

Paganin, Sally;
de Valpine, Perry

Publication type:

Article