Works by De Meyer, Tim

Results: 67

Transcriptional analysis through RNA sequencing of giant cells induced by Meloidogyne graminicola in rice roots.

Published in:

Journal of Experimental Botany, 2013, v. 64, n. 12, p. 3885, doi. 10.1093/jxb/ert219

By:

Ji, Hongli;
Gheysen, Godelieve;
Denil, Simon;
Lindsey, Keith;
Topping, Jennifer F.;
Nahar, Kamrun;
Haegeman, Annelies;
De Vos, Winnok H.;
Trooskens, Geert;
Van Criekinge, Wim;
De Meyer, Tim;
Kyndt, Tina

Publication type:

Article

Transcriptome analysis of rice mature root tissue and root tips in early development by massive parallel sequencing.

Published in:

Journal of Experimental Botany, 2012, v. 63, n. 5, p. 2141, doi. 10.1093/jxb/err435

By:

Kyndt, Tina;
Denil, Simon;
Haegeman, Annelies;
Trooskens, Geert;
De Meyer, Tim;
Van Criekinge, Wim;
Gheysen, Godelieve

Publication type:

Article

A variant at chromosome 9p21 is associated with recurrent myocardial infarction and cardiac death after acute coronary syndrome: The GRACE Genetics Study.

Published in:

European Heart Journal, 2010, v. 31, n. 9, p. 1132, doi. 10.1093/eurheartj/ehq053

By:

Buysschaert, Ian;
Carruthers, Kathryn F.;
Dunbar, Donald R.;
Peuteman, Gilian;
Rietzschel, Ernst;
Belmans, Ann;
Hedley, Ann;
De Meyer, Tim;
Budaj, Andrzej;
Van de Werf, Frans;
Lambrechts, Diether;
Fox, Keith A. A.

Publication type:

Article

Systemic telomere length and preclinical atherosclerosis: the Asklepios Study.

Published in:

European Heart Journal, 2009, v. 30, n. 24, p. 3074

By:

De Meyer, Tim;
Rietzschel, Ernst R.;
De Buyzere, Marc L.;
Langlois, Michel R.;
De Bacquer, Dirk;
Segers, Patrick;
Van Damme, Piet;
De Backer, Guy G.;
Van Oostveldt, Patrick;
Van Criekinge, Wim;
Gillebert, Thierry C.;
Bekaert, Sofie

Publication type:

Article

Genome‐wide DNA hypomethylation shapes nematode pattern‐triggered immunity in plants.

Published in:

New Phytologist, 2020, v. 227, n. 2, p. 545, doi. 10.1111/nph.16532

By:

Atighi, Mohammad Reza;
Verstraeten, Bruno;
De Meyer, Tim;
Kyndt, Tina

Publication type:

Article

PubMeth: a cancer methylation database combining text-mining and expert annotation.

Published in:

Nucleic Acids Research, 2008, v. 36, p. D842

By:

Ongenaert, Maté;
Van Neste, Leander;
De Meyer, Tim;
Menschaert, Gerben;
Bekaert, Sofie;
Van Criekinge, Wim

Publication type:

Article

Possible technical and biological explanations for the 'parental telomere length inheritance discrepancy' enigma.

Published in:

European Journal of Human Genetics, 2015, v. 23, n. 1, p. 3, doi. 10.1038/ejhg.2014.65

By:

De Meyer, Tim;
Eisenberg, Dan T A

Publication type:

Article

A non-genetic, epigenetic-like mechanism of telomere length inheritance?

Published in:

European Journal of Human Genetics, 2014, v. 22, n. 1, p. 10, doi. 10.1038/ejhg.2013.255

By:

De Meyer, Tim;
Vandepitte, Katrien;
Denil, Simon;
De Buyzere, Marc L;
Rietzschel, Ernst R;
Bekaert, Sofie

Publication type:

Article

Molecular insights into the compatible and incompatible interactions between sugar beet and the beet cyst nematode.

Published in:

BMC Plant Biology, 2020, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12870-020-02706-8

By:

Ghaemi, Razieh;
Pourjam, Ebrahim;
Safaie, Naser;
Verstraeten, Bruno;
Mahmoudi, Seyed Bagher;
Mehrabi, Rahim;
De Meyer, Tim;
Kyndt, Tina

Publication type:

Article

A Hypomorphic Mutant of PHD Domain Protein Male Meiocytes Death 1.

Published in:

Genes, 2021, v. 12, n. 4, p. 516, doi. 10.3390/genes12040516

By:

Liu, Bing;
Jin, Chunlian;
De Storme, Nico;
Schotte, Sébastien;
Schindfessel, Cédric;
De Meyer, Tim;
Geelen, Danny

Publication type:

Article

Correction to: Spatiotemporal expression profle of novel and known small RNAs throughout rice plant development focussing on seed tissues.

Published in:

2022

By:

Meijer, Anikó;
De Meyer, Tim;
Vandepoele, Klaas;
Kyndt, Tina

Publication type:

Correction Notice

Spatiotemporal expression profile of novel and known small RNAs throughout rice plant development focussing on seed tissues.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-021-08264-z

By:

Meijer, Anikó;
De Meyer, Tim;
Vandepoele, Klaas;
Kyndt, Tina

Publication type:

Article

Correction to: Non-coding RNAs in the interaction between rice and Meloidogyne graminicola.

Published in:

2022

By:

Verstraeten, Bruno;
Atighi, Mohammad Reza;
Ruiz-Ferrer, Virginia;
Escobar, Carolina;
De Meyer, Tim;
Kyndt, Tina

Publication type:

Correction Notice

Spatiotemporal expression profile of novel and known small RNAs throughout rice plant development focussing on seed tissues.

Published in:

BMC Genomics, 2022, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-08264-z

By:

Meijer, Anikó;
De Meyer, Tim;
Vandepoele, Klaas;
Kyndt, Tina

Publication type:

Article

Spatiotemporal expression profile of novel and known small RNAs throughout rice plant development focussing on seed tissues.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-021-08264-z

By:

Meijer, Anikó;
De Meyer, Tim;
Vandepoele, Klaas;
Kyndt, Tina

Publication type:

Article

The genome of the extremophile Artemia provides insight into strategies to cope with extreme environments.

Published in:

BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-07937-z

By:

De Vos, Stephanie;
Rombauts, Stephane;
Coussement, Louis;
Dermauw, Wannes;
Vuylsteke, Marnik;
Sorgeloos, Patrick;
Clegg, James S.;
Nambu, Ziro;
Van Nieuwerburgh, Filip;
Norouzitallab, Parisa;
Van Leeuwen, Thomas;
De Meyer, Tim;
Van Stappen, Gilbert;
Van de Peer, Yves;
Bossier, Peter

Publication type:

Article

Non-coding RNAs in the interaction between rice and Meloidogyne graminicola.

Published in:

BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-07735-7

By:

Verstraeten, Bruno;
Atighi, Mohammad Reza;
Ruiz-Ferrer, Virginia;
Escobar, Carolina;
De Meyer, Tim;
Kyndt, Tina

Publication type:

Article

Patterns of sex ratio variation and genetic diversity in the dioecious forest perennial Mercurialis perennis.

Published in:

Plant Ecology, 2010, v. 206, n. 1, p. 105, doi. 10.1007/s11258-009-9627-y

By:

Vandepitte, Katrien;
Honnay, Olivier;
De Meyer, Tim;
Jacquemyn, Hans;
Roldán-Ruiz, Isabel

Publication type:

Article

Reproducibility of Telomere Length Assessment--An International Collaborative Study.

Published in:

2015

By:

Martin-Ruiz, Carmen M;
Baird, Duncan;
Roger, Laureline;
Boukamp, Petra;
Krunic, Damir;
Cawthon, Richard;
Dokter, Martin M;
van der Harst, Pim;
Bekaert, Sofie;
de Meyer, Tim;
Roos, Goran;
Svenson, Ulrika;
Codd, Veryan;
Samani, Nilesh J;
McGlynn, Liane;
Shiels, Paul G;
Pooley, Karen A;
Dunning, Alison M;
Cooper, Rachel;
Wong, Andrew

Publication type:

corrected article

Reproducibility of telomere length assessment: Authors' Response to Damjan Krstajic and Ljubomir Buturovic.

Published in:

2015

By:

Martin-Ruiz, Carmen M.;
Baird, Duncan;
Roger, Laureline;
Boukamp, Petra;
Krunic, Damir;
Cawthon, Richard;
Dokter, Martin M.;
Van Der Harst, Pim;
Bekaert, Sofie;
De Meyer, Tim;
Roos, Goran;
Svenson, Ulrika;
Codd, Veryan;
Samani, Nilesh J.;
Mcglynn, Liane;
Shiels, Paul G.;
Pooley, Karen A.;
Dunning, Alison M.;
Cooper, Rachel;
AndrewWong

Publication type:

Letter

Is Southern blotting necessary to measure telomere length reproducibly? Authors' Response to: Commentary: The reliability of telomere length measurements.

Published in:

2015

By:

Martin-Ruiz, Carmen M.;
Baird, Duncan;
Roger, Laureline;
Boukamp, Petra;
Krunic, Damir;
Cawthon, Richard;
Dokter, Martin M.;
Van Der Harst, Pim;
Bekaert, Sofie;
De Meyer, Tim;
Roos, Goran;
Svenson, Ulrika;
Codd, Veryan;
Samani, Nilesh J.;
Mcglynn, Liane;
Shiels, Paul G.;
Pooley, Karen A.;
Dunning, Alison M.;
Cooper, Rachel;
AndrewWong

Publication type:

journal article

Reproducibility of telomere length assessment: an international collaborative study.

Published in:

2015

By:

Martin-Ruiz, Carmen M.;
Baird, Duncan;
Roger, Laureline;
Boukamp, Petra;
Krunic, Damir;
Cawthon, Richard;
Dokter, Martin M.;
van der Harst, Pim;
Bekaert, Sofie;
de Meyer, Tim;
Roos, Goran;
Svenson, Ulrika;
Codd, Veryan;
Samani, Nilesh J.;
McGlynn, Liane;
Shiels, Paul G.;
Pooley, Karen A.;
Dunning, Alison M.;
Cooper, Rachel;
AndrewWong

Publication type:

journal article

Paternal age at birth is an important determinant of offspring telomere length.

Published in:

Human Molecular Genetics, 2007, v. 16, n. 24, p. 3097

By:

De Meyer, Tim;
Rietzschel, Ernst R.;
De Buyzere, Marc L.;
De Bacquer, Dirk;
Van Criekinge, Wim;
De Backer, Guy G.;
Gillebert, Thierry C.;
Van Oostveldt, Patrick;
Bekaert, Sofie

Publication type:

Article

Molecular and epigenetic features of melanomas and tumor immune microenvironment linked to durable remission to ipilimumab-based immunotherapy in metastatic patients.

Published in:

2016

By:

Seremet, Teofila;
Koch, Alexander;
Jansen, Yanina;
Schreuer, Max;
Wilgenhof, Sofie;
Del Marmol, Véronique;
Liènard, Danielle;
Thielemans, Kris;
Schats, Kelly;
Kockx, Mark;
Van Criekinge, Wim;
Coulie, Pierre G.;
De Meyer, Tim;
van Baren, Nicolas;
Neyns, Bart

Publication type:

journal article

Evaluation of standard and advanced preprocessing methods for the univariate analysis of blood serum H-NMR spectra.

Published in:

Analytical & Bioanalytical Chemistry, 2010, v. 398, n. 4, p. 1781, doi. 10.1007/s00216-010-4085-x

By:

De Meyer, Tim;
Sinnaeve, Davy;
Gasse, Bjorn Van;
Rietzschel, Ernst-R;
De Buyzere, Marc L.;
Langlois, Michel R.;
Bekaert, Sofie;
Martins, José C.;
Van Criekinge, Wim

Publication type:

Article

Epigenetic sampling effects: nephrectomy modifies the clear cell renal cell cancer methylome.

Published in:

Cellular Oncology (2211-3428), 2017, v. 40, n. 3, p. 293, doi. 10.1007/s13402-016-0313-5

By:

Van Neste, Christophe;
Laird, Alexander;
O'Mahony, Fiach;
Van Criekinge, Wim;
Deforce, Dieter;
Van Nieuwerburgh, Filip;
Powles, Thomas;
Harrison, David;
Stewart, Grant;
De Meyer, Tim

Publication type:

Article

Staphylococcal enterotoxin B influences the DNA methylation pattern in nasal polyp tissue: a preliminary study.

Published in:

Allergy, Asthma & Clinical Immunology, 2013, v. 9, n. 1, p. 17, doi. 10.1186/1710-1492-9-48

By:

Pérez-Novo, Claudina A.;
Yuan Zhang;
Denil, Simon;
Trooskens, Geert;
De Meyer, Tim;
Van Criekinge, Wim;
Van Cauwenberge, Paul;
Luo Zhang;
Bachert, Claus

Publication type:

Article

MEXPRESS: visualizing expression, DNA methylation and clinical TCGA data.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1847-z

By:

Koch, Alexander;
De Meyer, Tim;
Jeschke, Jana;
Criekinge, Wim Van

Publication type:

Article

Changes in histone lysine acetylation, but not DNA methylation during facultative hibernation in Syrian hamster liver.

Published in:

Epigenetics Communications, 2024, v. 4, n. 1, p. 1, doi. 10.1186/s43682-023-00024-2

By:

Oosterhof, Marloes M.;
Coussement, Louis;
van Pijkeren, Alienke;
Kwiatkowski, Marcel;
Zwinderman, Martijn R. H.;
Dekker, Frank J.;
de Meyer, Tim;
Reitsema, Vera A.;
Bischoff, Rainer;
Guryev, Victor;
Bouma, Hjalmar R.;
Henning, Rob H.;
Rots, Marianne G.

Publication type:

Article

Quantitative transcriptomic and epigenomic data analysis: a primer.

Published in:

Bioinformatics Advances, 2024, v. 4, n. 1, p. 1, doi. 10.1093/bioadv/vbae019

By:

Coussement, Louis;
Criekinge, Wim Van;
Meyer, Tim De

Publication type:

Article

Decreasing initial telomere length in humans intergenerationally understates age-associated telomere shortening.

Published in:

Aging Cell, 2015, v. 14, n. 4, p. 669, doi. 10.1111/acel.12347

By:

Holohan, Brody;
De Meyer, Tim;
Batten, Kimberly;
Mangino, Massimo;
Hunt, Steven C.;
Bekaert, Sofie;
De Buyzere, Marc L.;
Rietzschel, Ernst R.;
Spector, Tim D.;
Wright, Woodring E.;
Shay, Jerry W.

Publication type:

Article

Lower red blood cell counts in middle-aged subjects with shorter peripheral blood leukocyte telomere length.

Published in:

Aging Cell, 2008, v. 7, n. 5, p. 700, doi. 10.1111/j.1474-9726.2008.00419.x

By:

De Meyer, Tim;
De Buyzere, Marc L.;
Langlois, Michel;
Rietzschel, Ernst R.;
Cassiman, Peter;
De Bacquer, Dirk;
Van Oostveldt, Patrick;
De Backer, Guy G.;
Gillebert, Thierry C.;
Van Criekinge, Wim;
Bekaert, Sofie

Publication type:

Article

Telomere length and cardiovascular risk factors in a middle-aged population free of overt cardiovascular disease.

Published in:

Aging Cell, 2007, v. 6, n. 5, p. 639, doi. 10.1111/j.1474-9726.2007.00321.x

By:

Bekaert, Sofie;
De Meyer, Tim;
Rietzschel, Ernst R.;
De Buyzere, Marc L.;
De Bacquer, Dirk;
Langlois, Michel;
Segers, Patrick;
Cooman, Luc;
Van Damme, Piet;
Cassiman, Peter;
Van Criekinge, Wim;
Verdonck, Pascal;
De Backer, Guy G.;
Gillebert, Thierry C.;
Van Oostveldt, Patrick

Publication type:

Article

Characterization of Loss-of-Imprinting in Breast Cancer at the Cellular Level by Integrating Single-Cell Full-Length Transcriptome with Bulk RNA-Seq Data.

Published in:

Biomolecules (2218-273X), 2024, v. 14, n. 12, p. 1598, doi. 10.3390/biom14121598

By:

Amin, Muhammad Talal;
Coussement, Louis;
De Meyer, Tim

Publication type:

Article

Loss-of-Imprinting of HM13 Leads to Poor Prognosis in Clear Cell Renal Cell Carcinoma.

Published in:

Biomolecules (2218-273X), 2024, v. 14, n. 8, p. 936, doi. 10.3390/biom14080936

By:

Voorthuijzen, Floris;
Stroobandt, Cedric;
Van Criekinge, Wim;
Goovaerts, Tine;
De Meyer, Tim

Publication type:

Article

The phenylalanine ammonia‐lyase inhibitor AIP induces rice defence against the root‐knot nematode Meloidogyne graminicola.

Published in:

Molecular Plant Pathology, 2024, v. 25, n. 1, p. 1, doi. 10.1111/mpp.13424

By:

Liu, Jing;
Lefevere, Hannes;
Coussement, Louis;
Delaere, Ilse;
De Meyer, Tim;
Demeestere, Kristof;
Höfte, Monica;
Gershenzon, Jonathan;
Ullah, Chhana;
Gheysen, Godelieve

Publication type:

Article

Diproline-induced resistance to parasitic nematodes in the same and subsequent rice generations: Roles of iron, nitric oxide and ethylene.

Published in:

Frontiers in Plant Science, 2023, v. 14, p. 1, doi. 10.3389/fpls.2023.1112007

By:

De Kesel, Jonas;
Bonneure, Eli;
Frei, Michael;
De Meyer, Tim;
Mangelinckx, Sven;
Kyndt, Tina

Publication type:

Article

The impact of extensive clonal growth on fine-scale mating patterns: a full paternity analysis of a lily-of-the-valley population (Convallaria majalis).

Published in:

Annals of Botany, 2013, v. 111, n. 4, p. 623, doi. 10.1093/aob/mct024

By:

Vandepitte, Katrien;
De Meyer, Tim;
Jacquemyn, Hans;
Roldán-Ruiz, Isabel;
Honnay, Olivier

Publication type:

Article

Targeted RNA‐seq successfully identifies normal and pathogenic splicing events in breast/ovarian cancer susceptibility and Lynch syndrome genes.

Published in:

International Journal of Cancer, 2019, v. 145, n. 2, p. 401, doi. 10.1002/ijc.32114

By:

Brandão, Rita D.;
Mensaert, Klaas;
López‐Perolio, Irene;
Tserpelis, Demis;
Xenakis, Markos;
Lattimore, Vanessa;
Walker, Logan C.;
Kvist, Anders;
Vega, Ana;
Gutiérrez‐Enríquez, Sara;
Díez, Orland;
Hoya, Miguel;
Spurdle, Amanda B.;
De Meyer, Tim;
Blok, Marinus J.

Publication type:

Article

Identification of DNA methylation markers for early detection of CRC indicates a role for nervous system-related genes in CRC.

Published in:

Clinical Epigenetics, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13148-021-01067-9

By:

Rademakers, Glenn;
Massen, Maartje;
Koch, Alexander;
Draht, Muriel X.;
Buekers, Nikkie;
Wouters, Kim A. D.;
Vaes, Nathalie;
De Meyer, Tim;
Carvalho, Beatriz;
Meijer, Gerrit A.;
Herman, James G.;
Smits, Kim M.;
van Engeland, Manon;
Melotte, Veerle

Publication type:

Article

Transcript‐ and annotation‐guided genome assembly of the European starling.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 8, p. 3141, doi. 10.1111/1755-0998.13679

By:

Stuart, Katarina C.;
Edwards, Richard J.;
Cheng, Yuanyuan;
Warren, Wesley C.;
Burt, David W.;
Sherwin, William B.;
Hofmeister, Natalie R.;
Werner, Scott J.;
Ball, Gregory F.;
Bateson, Melissa;
Brandley, Matthew C.;
Buchanan, Katherine L.;
Cassey, Phillip;
Clayton, David F.;
De Meyer, Tim;
Meddle, Simone L.;
Rollins, Lee A.

Publication type:

Article

Dicer-like 3a mediates intergenerational resistance against root-knot nematodes in rice via hormone responses.

Published in:

Plant Physiology, 2023, v. 193, n. 3, p. 2071, doi. 10.1093/plphys/kiad215

By:

Meijer, Anikó;
Atighi, Mohammad Reza;
Demeestere, Kristof;
De Meyer, Tim;
Vandepoele, Klaas;
Kyndt, Tina

Publication type:

Article

Trans-driven variation in expression is common among detoxification genes in the extreme generalist herbivore Tetranychus urticae.

Published in:

PLoS Genetics, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pgen.1010333

By:

Kurlovs, Andre H.;
De Beer, Berdien;
Ji, Meiyuan;
Vandenhole, Marilou;
De Meyer, Tim;
Feyereisen, René;
Clark, Richard M.;
Van Leeuwen, Thomas

Publication type:

Article

Dehydroascorbate induces plant resistance in rice against root‐knot nematode Meloidogyne graminicola.

Published in:

Molecular Plant Pathology, 2022, v. 23, n. 9, p. 1303, doi. 10.1111/mpp.13230

By:

Chavan, Satish Namdeo;
De Kesel, Jonas;
Desmedt, Willem;
Degroote, Eva;
Singh, Richard Raj;
Nguyen, Giang Thu;
Demeestere, Kristof;
De Meyer, Tim;
Kyndt, Tina

Publication type:

Article

Genome‐wide shifts in histone modifications at early stage of rice infection with Meloidogyne graminicola.

Published in:

Molecular Plant Pathology, 2021, v. 22, n. 4, p. 440, doi. 10.1111/mpp.13037

By:

Atighi, Mohammad Reza;
Verstraeten, Bruno;
De Meyer, Tim;
Kyndt, Tina

Publication type:

Article

Chorismate mutase and isochorismatase, two potential effectors of the migratory nematode Hirschmanniella oryzae, increase host susceptibility by manipulating secondary metabolite content of rice.

Published in:

Molecular Plant Pathology, 2020, v. 21, n. 12, p. 1634, doi. 10.1111/mpp.13003

By:

Bauters, Lander;
Kyndt, Tina;
De Meyer, Tim;
Morreel, Kris;
Boerjan, Wout;
Lefevere, Hannes;
Gheysen, Godelieve

Publication type:

Article

Mining for viral fragments in methylation enriched sequencing data.

Published in:

Frontiers in Genetics, 2015, v. 6, p. 1, doi. 10.3389/fgene.2015.00016

By:

Mensaert, Klaas;
Van Criekinge, Wim;
Thas, Olivier;
Schuuring, Ed;
Steenbergen, Renske D. M.;
Wisman, Bea A.;
De Meyer, Tim

Publication type:

Article

MEXPRESS update 2019.

Published in:

Nucleic Acids Research, 2019, v. 47, n. W1, p. W561, doi. 10.1093/nar/gkz445

By:

Koch, Alexander;
Jeschke, Jana;
Van Criekinge, Wim;
van Engeland, Manon;
De Meyer, Tim

Publication type:

Article

SNP-guided identification of monoallelic DNA-methylation events from enrichment-based sequencing data.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. e157, doi. 10.1093/nar/gku847

By:

Steyaert, Sandra;
Van Criekinge, Wim;
De Paepe, Ayla;
Denil, Simon;
Mensaert, Klaas;
Vandepitte, Katrien;
Berghe, Wim Vanden;
Trooskens, Geert;
De Meyer, Tim

Publication type:

Article

A comprehensive overview of genomic imprinting in breast and its deregulation in cancer.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06566-7

By:

Goovaerts, Tine;
Steyaert, Sandra;
Vandenbussche, Chari A.;
Galle, Jeroen;
Thas, Olivier;
Van Criekinge, Wim;
De Meyer, Tim

Publication type:

Article