Works by Dastmalchi, Siavoush

Results: 88

The impact of simulation time in predicting binding free energies using end-point approaches.

Published in:

Journal of Bioinformatics & Computational Biology, 2022, v. 20, n. 5, p. 1, doi. 10.1142/S021972002250024X

By:

Sokouti, Babak;
Dastmalchi, Siavoush;
Hamzeh-Mivehroud, Maryam

Publication type:

Article

Hybridization‐based design of novel anticholinesterase indanone–carbamates for Alzheimer's disease: Synthesis, biological evaluation, and docking studies.

Published in:

Archiv der Pharmazie, 2021, v. 354, n. 7, p. 1, doi. 10.1002/ardp.202000453

By:

Shahrivar‐Gargari, Mohammad;
Hamzeh‐Mivehroud, Maryam;
Hemmati, Salar;
Mojarrad, Javid S.;
Tüylü Küçükkılınç, Tuba;
Ayazgök, Beyza;
Dastmalchi, Siavoush

Publication type:

Article

Identification of a RON tyrosine kinase receptor binding peptide using phage display technique and computational modeling of its binding mode.

Published in:

Journal of Molecular Modeling, 2017, v. 23, n. 9, p. 1, doi. 10.1007/s00894-017-3437-2

By:

Zarei, Omid;
Benvenuti, Silvia;
Ustun-Alkan, Fulya;
Hamzeh-Mivehroud, Maryam;
Dastmalchi, Siavoush

Publication type:

Article

In Vitro and In Silico Studies to Explore Structural Features of Flavonoids for Aldehyde Oxidase Inhibition.

Published in:

Archiv der Pharmazie, 2014, v. 347, n. 10, p. 738, doi. 10.1002/ardp.201400076

By:

Hamzeh ‐ Mivehroud, Maryam;
Rahmani, Seifullah;
Feizi, Mohammad ‐ Ali Hosseinpour;
Dastmalchi, Siavoush;
Rashidi, Mohammad ‐ Reza

Publication type:

Article

Systems biology comprehensive analysis on breast cancer for identification of key gene modules and genes associated with TNM-based clinical stages.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-67643-w

By:

Amjad, Elham;
Asnaashari, Solmaz;
Sokouti, Babak;
Dastmalchi, Siavoush

Publication type:

Article

Prediction of the Human EP1 Receptor Binding Site by Homology Modeling and Molecular Dynamics Simulation.

Published in:

Scientia Pharmaceutica, 2011, v. 79, n. 4, p. 793, doi. 10.3797/scipharm.1106-24

By:

Zare, Behnoush;
Madadkar-Sobhani, Armin;
Dastmalchi, Siavoush;
Mahmoudian, Masoud

Publication type:

Article

Effects of Angiotensin II Receptor Blockade on Soluble Klotho and Oxidative Stress in Calcineurin Inhibitor Nephrotoxicity in Rats.

Published in:

2016

By:

Raeisi, Sina;
Ghorbanihaghjo, Amir;
Argani, Hassan;
Dastmalchi, Siavoush;
Ghasemi, Babollah;
Ghazizadeh, Teimour;
Rashtchizadeh, Nadereh;
Nemati, Mahboob;
Mesgari Abbasi, Mehran;
Bargahi, Nasrin;
Mota, Ali;
Mansour Vatankhah, Amir;
Vatankhah, Amir Mansour

Publication type:

journal article

Growth Arrest-specific 6 Protein and Matrix Gla Protein in Hemodialysis Patients.

Published in:

Iranian Journal of Kidney Diseases, 2015, v. 9, n. 3, p. 249

By:

Hallajzadeh, Jamal;
Ghorbanihaghjo, Amir;
Argani, Hassan;
Dastmalchi, Siavoush;
Rashtchizadeh, Nadereh

Publication type:

Article

Extraction of methamphetamine and pseudoephedrine by modified graphene oxide solid phase extraction method coupled to HPLC-UV in urine sample.

Published in:

BMC Chemistry, 2024, v. 18, n. 1, p. 1, doi. 10.1186/s13065-024-01331-y

By:

Nourani, Nasim;
Javadzadeh, Yousef;
Shayanfar, Ali;
Taghvimi, Arezou;
Bavili-Tabrizi, Ahad;
Dastmalchi, Siavoush

Publication type:

Article

Determination of indoxyl sulfate by spectrofluorimetric method in human plasma through extraction with deep eutectic solvent.

Published in:

BMC Chemistry, 2024, v. 18, n. 1, p. 1, doi. 10.1186/s13065-024-01172-9

By:

Shafiee, Samira;
Dastmalchi, Siavoush;
Gharekhani, Afshin;
Shayanfar, Ali

Publication type:

Article

Protection of renal damage by HMG-CoA inhibitors: A comparative study between atorvastatin and rosuvastatin.

Published in:

Iranian Journal of Basic Medical Sciences, 2020, v. 23, n. 2, p. 206, doi. 10.22038/IJBMS.2019.38239.9080

By:

Jabarpour, Maryam;
Rashtchizadeh, Nadereh;
haghjo, Amir Ghorbani;
Argani, Hassan;
Nemati, Mahboub;
Dastmalchi, Siavoush;
Roshangar, Leila;
Ranjbarzadhag, Masoumeh;
Mesgari-Abbasi, Mehran;
Bargahi, Nasrin;
Sanajou, Davoud

Publication type:

Article

In silico and in vitro studies of two non‐imidazole multiple targeting agents at histamine H3 receptors and cholinesterase enzymes.

Published in:

Chemical Biology & Drug Design, 2020, v. 95, n. 2, p. 279, doi. 10.1111/cbdd.13642

By:

Ghamari, Nakisa;
Dastmalchi, Siavoush;
Zarei, Omid;
Arias‐Montaño, José‐Antonio;
Reiner, David;
Ustun‑Alkan, Fulya;
Stark, Holger;
Hamzeh‐Mivehroud, Maryam

Publication type:

Article

Histamine H3 receptor ligands by hybrid virtual screening, docking, molecular dynamics simulations, and investigation of their biological effects.

Published in:

Chemical Biology & Drug Design, 2019, v. 93, n. 5, p. 832, doi. 10.1111/cbdd.13471

By:

Ghamari, Nakisa;
Zarei, Omid;
Reiner, David;
Dastmalchi, Siavoush;
Stark, Holger;
Hamzeh‐Mivehroud, Maryam

Publication type:

Article

Identification of New Peptide Ligands for Epidermal Growth Factor Receptor Using Phage Display and Computationally Modeling their Mode of Binding.

Published in:

Chemical Biology & Drug Design, 2012, v. 79, n. 3, p. 246, doi. 10.1111/j.1747-0285.2011.01282.x

By:

Hamzeh-Mivehroud, Maryam;
Mahmoudpour, Ali;
Dastmalchi, Siavoush

Publication type:

Article

Construction of a bacteriophage-derived vector with potential applications in targeted drug delivery and cell imaging.

Published in:

Biotechnology Letters, 2024, v. 46, n. 2, p. 147, doi. 10.1007/s10529-023-03455-y

By:

Sharifi, Mehdi;
Alizadeh, Ali Akbar;
Mivehroud, Maryam Hamzeh;
Dastmalchi, Siavoush

Publication type:

Article

Kinetic Analysis of Chlorpropamide Dissolution from Solid Dispersions.

Published in:

Drug Development & Industrial Pharmacy, 2007, v. 33, n. 1, p. 63, doi. 10.1080/03639040600762636

By:

Barzegar-Jalali, Mohammad;
Dastmalchi, Siavoush

Publication type:

Article

Application of bioinformatics and molecular dynamics simulation approaches for identification of fibroblast growth factor 10 analogues with potentially improved thermostability.

Published in:

Growth Factors, 2020, v. 38, n. 3/4, p. 197, doi. 10.1080/08977194.2021.1881501

By:

Alizadeh, Ali Akbar;
Jafari, Behzad;
Dastmalchi, Siavoush

Publication type:

Article

Empagliflozin alleviates renal inflammation and oxidative stress in streptozotocin-induced diabetic rats partly by repressing HMGB1-TLR4 receptor axis.

Published in:

Iranian Journal of Basic Medical Sciences, 2019, v. 22, n. 4, p. 384, doi. 10.22038/ijbms.2019.31788.7651

By:

Jigheh, Zahra Ashrafi;
Haghjo, Amir Ghorbani;
Argani, Hassan;
Roshangar, Leila;
Rashtchizadeh, Nadereh;
Sanajou, Davoud;
Soltan Ahmad, Saeed Nazari;
Rashedi, Jalil;
Dastmalchi, Siavoush;
Abbasi, Mehran Mesgari

Publication type:

Article

Tangeretin protects renal tubular epithelial cells against experimental cisplatin toxicity.

Published in:

Iranian Journal of Basic Medical Sciences, 2019, v. 22, n. 2, p. 179, doi. 10.22038/ijbms.2018.32010.7691

By:

Ahmad, Saeed Nazari Soltan;
Rashtchizadeh, Nadereh;
Argani, Hassan;
Roshangar, Leila;
Ghorbanihaghjo, Amir;
Sanajou, Davoud;
Panah, Fatemeh;
Jigheh, Zahra Ashrafi;
Dastmalchi, Siavoush;
Kalantary-Charvadeh, Ashkan

Publication type:

Article

Characterization of Novel Fragment Antibodies Against TNF-alpha Isolated Using Phage Display Technique.

Published in:

Iranian Journal of Pharmaceutical Research, 2019, v. 18, n. 2, p. 759, doi. 10.22037/ijpr.2019.1100646

By:

Alizadeha, Ali Akbar;
Hamzeh-Mivehroud, Maryam;
Haddad, Elnaz;
Haddad, Nazanin;
Sharifi, Mehdi;
Mohammadi, Samin;
Pourtaghi-anvarian, Samira;
Dastmalchi, Siavoush

Publication type:

Article

Design and Construction of a Novel Humanized Single-Chain Variable-Fragment Antibody Against the Tumor Necrosis Factor Alpha.

Published in:

Iranian Journal of Pharmaceutical Research, 2019, v. 18, n. 1, p. 308

By:

Farajzadeh, Davoud;
Karimi-Gharigh, Sadigheh;
Jalali-Kondori, Parisa;
Dastmalchi, Siavoush

Publication type:

Article

A Simple and Rapid Protocol for Producing Yeast Extract from Saccharomyces cerevisiae Suitable for Preparing Bacterial Culture Media.

Published in:

Iranian Journal of Pharmaceutical Research, 2016, v. 15, n. 4, p. 907

By:

Zarei, Omid;
Dastmalchi, Siavoush;
Hamzeh-Mivehroud, Maryam

Publication type:

Article

In-silico Investigation of Tubulin Binding Modes of a Series of Novel Antiproliferative Spiroisoxazoline Compounds Using Docking Studies.

Published in:

Iranian Journal of Pharmaceutical Research, 2015, v. 14, n. 1, p. 141

By:

Abolhasani, Hoda;
Zarghi, Afshin;
Hamzeh-Mivehroud, Maryam;
Alizadeh, Ali Akbar;
Mojarrad, Javid Shahbazi;
Dastmalchi, Siavoush

Publication type:

Article

Silica-Functionalized Nano-Graphene Oxide Composite as Potent-Dispersive Solid-Phase Extraction Adsorbent of Methylphenidate from Urine Samples.

Published in:

Arabian Journal for Science & Engineering (Springer Science & Business Media B.V. ), 2020, v. 45, n. 6, p. 4697, doi. 10.1007/s13369-020-04423-8

By:

Orange, Shadi Jahed;
Taghvimi, Arezou;
Dastmalchi, Siavoush;
Javadzadeh, Yousef

Publication type:

Article

Novel Ceramic Carbon-Coated Magnetic Nanoparticles as Stir Bar Sorptive Extraction Coating for Simultaneous Extraction of Amphetamines from Urine Samples.

Published in:

Arabian Journal for Science & Engineering (Springer Science & Business Media B.V. ), 2019, v. 44, n. 7, p. 6373, doi. 10.1007/s13369-019-03810-0

By:

Taghvimi, Arezou;
Dastmalchi, Siavoush;
Javadzadeh, Yousef

Publication type:

Article

An integrated study fusing systems biology and machine learning algorithms for genome-based discrimination of IPF and NSIP diseases: a new approach to the diagnostic challenge.

Published in:

Soft Computing - A Fusion of Foundations, Methodologies & Applications, 2024, v. 28, n. 6, p. 5721, doi. 10.1007/s00500-023-09364-6

By:

Amjad, Elham;
Asnaashari, Solmaz;
Dastmalchi, Siavoush;
Sokouti, Babak

Publication type:

Article

Characterization of the novel anti-TNF-α single-chain fragment antibodies using experimental and computational approaches.

Published in:

Preparative Biochemistry & Biotechnology, 2019, v. 49, n. 1, p. 38, doi. 10.1080/10826068.2018.1487855

By:

Pourtaghi-Anvarian, Samira;
Mohammadi, Samin;
Hamzeh-Mivehroud, Maryam;
Alizadeh, Ali Akbar;
Dastmalchi, Siavoush

Publication type:

Article

Comparison of the transmembrane helices of bovine rhodopsin in the crystal structure and the C α template based on cryo-electron microscopy maps and sequence analysis of the G protein-coupled receptors.

Published in:

Molecular Simulation, 2002, v. 28, n. 8/9, p. 845, doi. 10.1080/0892702021000002520

By:

Dastmalchi, Siavoush;
Kobus, Felix J.;
Iismaa, Tiina P.;
Morris, Michael B.;
Church, W. Bret

Publication type:

Article

SOLUBILITY PREDICTION OF SULFONAMIDES AT VARIOUS TEMPERATURES USING A SINGLE DETERMINATION.

Published in:

DARU: Journal of Pharmaceutical Sciences, 2007, v. 15, n. 2, p. 37

By:

Hanaee, Jalal;
Jouyban, Abolghasem;
Dastmalchi, Siavoush;
Adibkia, Khosro;
Mirzazadeh, Ahmad;
Barzegar-Jalali, Mohammad

Publication type:

Article

MOLECULAR MODELLING OF HUMAN ALDEHYDE OXIDASE AND IDENTIFICATION OF THE KEY INTERACTIONS IN THE ENZYME-SUBSTRATE COMPLEX.

Published in:

DARU: Journal of Pharmaceutical Sciences, 2005, v. 13, n. 3, p. 82

By:

Dastmalchi, Siavoush;
Hamzeh-mivehrod, Maryam

Publication type:

Article

SOLUBILITY PREDICTION OF SULFONAMIDES AT VARIOUS TEMPERATURES USING A SINGLE DETERMINATION.

Published in:

DARU: Journal of Pharmaceutical Sciences, 2005, v. 13, n. 2, p. 37

By:

Hanaee, Jalal;
Jouyban, Abolghasem;
Dastmalchi, Siavoush;
Adibkia, Khosro;
Mirzazadeh, Ahmad;
Barzegar-Jalali, Mohammad

Publication type:

Article

H, N and C assignments of an intramolecular Lmo2-LIM2/Ldb1-LID complex.

Published in:

Biomolecular NMR Assignments, 2010, v. 4, n. 2, p. 203, doi. 10.1007/s12104-010-9240-y

By:

Wilkinson-White, Lorna;
Dastmalchi, Siavoush;
Kwan, Ann;
Ryan, Daniel;
Mackay, Joel;
Matthews, Jacqueline

Publication type:

Article

Affinity maturation and characterization of the ofatumumab monoclonal antibody.

Published in:

Journal of Cellular Biochemistry, 2019, v. 120, n. 1, p. 940, doi. 10.1002/jcb.27457

By:

Payandeh, Zahra;
Rajabibazl, Masoumeh;
Mortazavi, Yousef;
Rahimpour, Azam;
Taromchi, Amir Hossein;
Dastmalchi, Siavoush

Publication type:

Article

Dunnione protects against experimental cisplatin-induced nephrotoxicity by modulating NQO1 and NAD+ levels.

Published in:

Free Radical Research, 2018, v. 52, n. 7, p. 808, doi. 10.1080/10715762.2018.1475732

By:

Nazari Soltan Ahmad, Saeed;
Rashtchizadeh, Nadereh;
Argani, Hassan;
Roshangar, Leila;
Ghorbani Haghjo, Amir;
Sanajou, Davoud;
Panah, Fatemeh;
Ashrafi Jigheh, Zahra;
Dastmalchi, Siavoush;
Mesgari-Abbasi, Mehran

Publication type:

Article

Spectroscopic investigation on the interaction of DNA with superparamagnetic iron oxide nanoparticles doped with chromene via dopamine as cross linker.

Published in:

Nanomedicine Journal, 2018, v. 5, n. 1, p. 36, doi. 10.22038/nmj.2018.05.006

By:

Mehdipour, Maryam;
Dehghan, Gholamreza;
Feizi, Mohammad Ali Hosseinpour;
Tarasi, Roghayeh;
Khoobi, Mehdi;
Dastmalchi, Siavoush

Publication type:

Article

Modelling the structures of G protein-coupled receptors aided by three-dimensional validation.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S1-S14

By:

Dastmalchi, Siavoush;
Church, W. Bret;
Morris, Michael B.

Publication type:

Article

Dispersive solid‐phase extraction of risperidone from plasma samples using graphene oxide aerogels and determination with liquid chromatography.

Published in:

Journal of Separation Science, 2023, v. 46, n. 14, p. 1, doi. 10.1002/jssc.202201028

By:

Feyzi, Faez;
Soleymani, Jafar;
Dastmalchi, Siavoush;
Ranjbar, Fatemeh;
Jouyban, Abolghasem

Publication type:

Article

Dispersive solid‐phase extraction adsorbent of methamphetamine using in‐situ synthesized carbon‐based conductive polypyrrole nanocomposite: focus on clinical applications in human urine.

Published in:

Journal of Separation Science, 2020, v. 43, n. 3, p. 606, doi. 10.1002/jssc.201900773

By:

Jabbari, Neghin Rashtchi;
Taghvimi, Arezou;
Dastmalchi, Siavoush;
Javadzadeh, Yousef

Publication type:

Article

Structure–activity relationship guided design, synthesis and biological evaluation of novel diaryl urea derivatives as antiproliferative agents.

Published in:

BMC Chemistry, 2025, v. 19, n. 1, p. 1, doi. 10.1186/s13065-025-01478-2

By:

Azimian, Fereshteh;
Cheshmazar, Narges;
Nasab, Narges Hosseini;
Eom, Young Seok;
Shim, Rok Su;
Kim, Song Ja;
Dastmalchi, Mahrokh;
Dastmalchi, Siavoush

Publication type:

Article

In silico Evaluation of Crosslinking Effects on Denaturant meq values and ΔCp upon Protein Unfolding.

Published in:

Avicenna Journal of Medical Biotechnology, 2012, v. 4, n. 1, p. 23

By:

Hamzeh-Mivehroud, Maryam;
Akbar Alizade, Ali;
Ahmadifar, Monire;
Dastmalchi, Siavoush

Publication type:

Article

Impact of Gene Biomarker Discovery Tools Based on Protein–Protein Interaction and Machine Learning on Performance of Artificial Intelligence Models in Predicting Clinical Stages of Breast Cancer.

Published in:

Interdisciplinary Sciences: Computational Life Sciences, 2020, v. 12, n. 4, p. 476, doi. 10.1007/s12539-020-00390-8

By:

Amjad, Elham;
Asnaashari, Solmaz;
Sokouti, Babak;
Dastmalchi, Siavoush

Publication type:

Article

Magnetic nano-carbon core shell as potent mixed hemimicelle solid phase extraction strategy for determination of acrylamide from potato chips coupled by high-performance liquid chromatography.

Published in:

Journal of the Iranian Chemical Society, 2020, v. 17, n. 4, p. 817, doi. 10.1007/s13738-019-01811-2

By:

Taghvimi, Arezou;
Hamidi, Samin;
Javadzadeh, Yousef;
Dastmalchi, Siavoush;
Tabibiazar, Mahnaz

Publication type:

Article

Computational explorations to gain insight into the structural features of TNF-α receptor I inhibitors.

Published in:

Journal of the Iranian Chemical Society, 2018, v. 15, n. 11, p. 2519, doi. 10.1007/s13738-018-1440-x

By:

Sharifi, Mehdi;
Alizadeh, Ali Akbar;
Hamzeh-Mivehroud, Maryam;
Dastmalchi, Siavoush

Publication type:

Article

Investigating the interaction of juglone (5-hydroxy-1, 4-naphthoquinone) with serum albumins using spectroscopic and in silico methods.

Published in:

Journal of the Iranian Chemical Society, 2017, v. 14, n. 7, p. 1527, doi. 10.1007/s13738-017-1094-0

By:

Jahanban-Esfahlan, Ali;
Davaran, Soodabeh;
Moosavi-Movahedi, Ali;
Dastmalchi, Siavoush

Publication type:

Article

An alignment-independent 3D-QSAR study on series of hydroxamic acid-based tumor necrosis factor-α converting enzyme inhibitors.

Published in:

Journal of Chemometrics, 2016, v. 30, n. 9, p. 537, doi. 10.1002/cem.2817

By:

Alizadeh, Ali Akbar;
Hamzeh‐Mivehroud, Maryam;
Sokouti, Babak;
Dastmalchi, Siavoush

Publication type:

Article

QSAR and docking studies on the (5-nitroheteroaryl-1,3,4-thiadiazole-2-yl) piperazinyl analogs with antileishmanial activity.

Published in:

Journal of Chemometrics, 2016, v. 30, n. 5, p. 284, doi. 10.1002/cem.2789

By:

Tahghighi, Azar;
Hamzeh‐Mivehroud, Maryam;
Asadpour Zeynali, Karim;
Foroumadi, Alireza;
Dastmalchi, Siavoush

Publication type:

Article

Oxidative stress‐induced renal telomere shortening as a mechanism of cyclosporine‐induced nephrotoxicity.

Published in:

Journal of Biochemical & Molecular Toxicology, 2018, v. 32, n. 8, p. 1, doi. 10.1002/jbt.22166

By:

Raeisi, Sina;
Ghorbanihaghjo, Amir;
Argani, Hassan;
Dastmalchi, Siavoush;
Seifi, Morteza;
Ghasemi, Babollah;
Ghazizadeh, Teimour;
Abbasi, Mehran Mesgari;
Karimi, Pouran

Publication type:

Article

Investigating Functional and Folding Stability of an Engineered E. coli L-asparaginase Harboring Y176F/S241C Mutations.

Published in:

Advanced Pharmaceutical Bulletin, 2024, v. 14, n. 3, p. 675, doi. 10.34172/apb.2024.048

By:

Dastmalchi, Mahrokh;
Hamzeh-Mivehroud, Maryam;
Rezazadeh, Hassan;
Farajollahi, Mohammad M;
Dastmalchi, Siavoush

Publication type:

Article

Expression and Biological Evaluation of an Engineered Recombinant L-asparaginase Designed by In Silico Method Based on Sequence of the Enzyme from Escherichia coli.

Published in:

Advanced Pharmaceutical Bulletin, 2023, v. 13, n. 4, p. 827, doi. 10.34172/apb.2023.085

By:

Dastmalchi, Mahrokh;
Alizadeh, Mahdiyeh;
Kandjan, Omid Jamshidi;
Rezazadeh, Hassan;
Hamzeh-Mivehroud, Maryam;
Farajollahi, Mohammad M.;
Dastmalchi, Siavoush

Publication type:

Article

17β-Estradiol-Loaded Exosomes for Targeted Drug Delivery in Osteoporosis: A Comparative Study of Two Loading Methods.

Published in:

Advanced Pharmaceutical Bulletin, 2023, v. 13, n. 4, p. 736, doi. 10.34172/apb.2023.072

By:

Farashah, Mohammad Sadegh Gholami;
Javadi, Maryam;
Rad, Jafar Soleimani;
Shakouri, Seyed Kazem;
Asnaashari, Solmaz;
Dastmalchi, Siavoush;
Nikzad, Sadeneh;
Roshangar, Leila

Publication type:

Article