Found: 48
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GRIL: genome rearrangement and inversion locator.
- Published in:
- Bioinformatics, 2004, v. 20, n. 1, p. 122, doi. 10.1093/bioinformatics/btg378
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- Article
Evaluation of recombination detection methods for viral sequencing.
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- Virus Evolution, 2023, v. 9, n. 2, p. 1, doi. 10.1093/ve/vead066
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- Article
CAMISIM: simulating metagenomes and microbial communities.
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- Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0633-6
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- Article
Near full-length 16S rRNA gene next-generation sequencing revealed <italic>Asaia</italic> as a common midgut bacterium of wild and domesticated Queensland fruit fly larvae.
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- Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0463-y
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- Article
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline.
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- Genome Biology, 2013, v. 14, n. 1, p. 1, doi. 10.1186/gb-2013-14-1-r2
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- Article
Comparative genomic analysis of a multiple antimicrobial resistant enterotoxigenic E. coli O157 lineage from Australian pigs.
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- BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1382-y
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- Article
Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli.
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- BMC Genomics, 2012, v. 13, n. 1, p. 256, doi. 10.1186/1471-2164-13-256
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- Article
Bacterial Communities Vary between Sinuses in Chronic Rhinosinusitis Patients.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2015.01532
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- Article
Comparative Genomics of the Genus Porphyromonas Identifies Adaptations for Heme Synthesis within the Prevalent Canine Oral Species Porphyromonas cangingivalis.
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- Genome Biology & Evolution, 2015, v. 7, n. 12, p. 3397, doi. 10.1093/gbe/evv220
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- Article
Lateral Transfer of Genes and Gene Fragments in Prokaryotes.
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- Genome Biology & Evolution, 2009, v. 1, p. 429, doi. 10.1093/gbe/evp044
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- Article
Efficient Sampling of Parsimonious Inversion Histories with Application to Genome Rearrangement in Yersinia.
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- Genome Biology & Evolution, 2009, v. 1, p. 153, doi. 10.1093/gbe/evp015
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- Article
Phylogenetic diversity analysis of shotgun metagenomic reads describes gut microbiome development and treatment effects in the post-weaned pig.
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- PLoS ONE, 2022, v. 17, n. 6, p. 1, doi. 10.1371/journal.pone.0270372
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- Article
The rise and fall of breakpoint reuse depending on genome resolution.
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- BMC Bioinformatics, 2011, v. 12, n. Suppl 9, p. 1, doi. 10.1186/1471-2105-12-S9-S1
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- Article
qc3C: Reference-free quality control for Hi-C sequencing data.
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- PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1008839
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- Article
BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics.
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- Systematic Biology, 2019, v. 68, n. 6, p. 1052, doi. 10.1093/sysbio/syz020
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- Article
Effective Online Bayesian Phylogenetics via Sequential Monte Carlo with Guided Proposals.
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- Systematic Biology, 2018, v. 67, n. 3, p. 490, doi. 10.1093/sysbio/syx090
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- Article
Online Bayesian Phylogenetic Inference: Theoretical Foundations via Sequential Monte Carlo.
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- Systematic Biology, 2018, v. 67, n. 3, p. 503, doi. 10.1093/sysbio/syx087
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- Article
Comparative genomic analysis of toxin-negative strains of Clostridium difficile from humans and animals with symptoms of gastrointestinal disease.
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- BMC Microbiology, 2016, v. 16, p. 1, doi. 10.1186/s12866-016-0653-3
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- Article
Phylogenetically Driven Sequencing of Extremely Halophilic Archaea Reveals Strategies for Static and Dynamic Osmo-response.
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- PLoS Genetics, 2014, v. 10, n. 11, p. 1, doi. 10.1371/journal.pgen.1004784
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- Article
Dynamics of Genome Rearrangement in Bacterial Populations.
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- PLoS Genetics, 2008, v. 4, n. 7, p. 1, doi. 10.1371/journal.pgen.1000128
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- Article
Tutorial: assessing metagenomics software with the CAMI benchmarking toolkit.
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- Nature Protocols, 2021, v. 16, n. 4, p. 1785, doi. 10.1038/s41596-020-00480-3
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- Article
The genome of Clostridium difficile 5.3.
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- Gut Pathogens, 2014, v. 6, n. 1, p. 1, doi. 10.1186/1757-4749-6-4
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- Article
Strainberry: automated strain separation in low-complexity metagenomes using long reads.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-24515-9
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- Article
bin3C: exploiting Hi-C sequencing data to accurately resolve metagenome-assembled genomes.
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- Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1643-1
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- Article
DESMAN: a new tool for de novo extraction of strains from metagenomes.
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- Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1309-9
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- Article
Phylogeny of Bacterial and Archaeal Genomes Using Conserved Genes: Supertrees and Supermatrices.
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- PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0062510
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- Article
An Integrated Pipeline for de Novo Assembly of Microbial Genomes.
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- PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0042304
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- Article
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement.
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- PLoS ONE, 2010, v. 5, n. 6, p. 1, doi. 10.1371/journal.pone.0011147
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- Article
Metagenomic Sequencing of an In Vitro-Simulated Microbial Community.
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- PLoS ONE, 2010, v. 5, n. 4, p. 1, doi. 10.1371/journal.pone.0010209
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- Article
Are Protein Domains Modules of Lateral Genetic Transfer?
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- PLoS ONE, 2009, v. 4, n. 2, p. 1, doi. 10.1371/journal.pone.0004524
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- Article
Evaluating probabilistic programming and fast variational Bayesian inference in phylogenetics.
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- PeerJ, 2019, p. 1, doi. 10.7717/peerj.8272
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- Article
Local and relaxed clocks: the best of both worlds.
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- PeerJ, 2018, p. 1, doi. 10.7717/peerj.5140
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- Article
Whole Genome Sequencing Analysis of Porcine Faecal Commensal Escherichia coli Carrying Class 1 Integrons from Sows and Their Offspring.
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- Microorganisms, 2020, v. 8, n. 6, p. 843, doi. 10.3390/microorganisms8060843
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- Article
Progressive genome-wide introgression in agricultural Campylobacter coli.
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- Molecular Ecology, 2013, v. 22, n. 4, p. 1051, doi. 10.1111/mec.12162
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- Article
Analysis of Theileria orientalis draft genome sequences reveals potential species-level divergence of the Ikeda, Chitose and Buffeli genotypes.
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- BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4701-2
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- Article
Rhometa: Population recombination rate estimation from metagenomic read datasets.
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- PLoS Genetics, 2023, v. 18, n. 3, p. 1, doi. 10.1371/journal.pgen.1010683
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- Article
A large-scale metagenomic survey dataset of the post-weaning piglet gut lumen.
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- GigaScience, 2021, v. 10, n. 6, p. 1, doi. 10.1093/gigascience/giab039
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- Article
Sim3C: simulation of Hi-C and Meta3C proximity ligation sequencing technologies.
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- GigaScience, 2018, v. 7, n. 2, p. 1, doi. 10.1093/gigascience/gix103
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- Article
STRONG: metagenomics strain resolution on assembly graphs.
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- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02419-7
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- Article
A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data.
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- Bioinformatics, 2015, v. 31, n. 4, p. 587, doi. 10.1093/bioinformatics/btu661
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- Article
Mauve Assembly Metrics.
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- Bioinformatics, 2011, v. 27, n. 19, p. 2756, doi. 10.1093/bioinformatics/btr451
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- Article
Seevolution: visualizing chromosome evolution.
- Published in:
- Bioinformatics, 2009, v. 25, n. 7, p. 960, doi. 10.1093/bioinformatics/btp096
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- Article
Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria.
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- Nucleic Acids Research, 2008, v. 36, p. D519
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- Publication type:
- Article
Genomes from bacteria associated with the canine oral cavity: A test case for automated genome-based taxonomic assignment.
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- PLoS ONE, 2019, v. 14, n. 6, p. 1, doi. 10.1371/journal.pone.0214354
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- Publication type:
- Article
High contiguity genome sequence of a multidrug-resistant hospital isolate of Enterobacter hormaechei.
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- Gut Pathogens, 2019, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13099-019-0288-7
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- Publication type:
- Article
The Common Oceanographer: Crowdsourcing the Collection of Oceanographic Data.
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- PLoS Biology, 2014, v. 12, n. 9, p. 1, doi. 10.1371/journal.pbio.1001947
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- Article
Expanding the range of the respiratory infectome in Australian feedlot cattle with and without respiratory disease using metatranscriptomics.
- Published in:
- Microbiome, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40168-023-01591-1
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- Article
The impact of migratory flyways on the spread of avian influenza virus in North America.
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- BMC Evolutionary Biology, 2017, v. 17, p. 1, doi. 10.1186/s12862-017-0965-4
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- Article