Works by Daran, Jean-Marc G.

Results: 15

De novo detection of copy number variation by co-assembly.

Published in:

Bioinformatics, 2012, v. 28, n. 24, p. 3195, doi. 10.1093/bioinformatics/bts601

By:

Nijkamp, Jurgen F.;
van den Broek, Marcel A.;
Geertman, Jan-Maarten A.;
Reinders, Marcel J. T.;
Daran, Jean-Marc G.;
de Ridder, Dick

Publication type:

Article

The complete genome sequence of the nitrile biocatalyst Rhodocccus rhodochrous ATCC BAA-870.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-019-6405-7

By:

Frederick, Joni;
Hennessy, Fritha;
Horn, Uli;
de la Torre Cortés, Pilar;
van den Broek, Marcel;
Strych, Ulrich;
Willson, Richard;
Hefer, Charles A.;
Daran, Jean-Marc G.;
Sewell, Trevor;
Otten, Linda G.;
Brady, Dean

Publication type:

Article

Chromosome level assembly and comparative genome analysis confirm lager-brewing yeasts originated from a single hybridization.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-6263-3

By:

Salazar, Alex N.;
Gorter de Vries, Arthur R.;
van den Broek, Marcel;
Brouwers, Nick;
de la Torre Cortès, Pilar;
Kuijpers, Niels G. A.;
Daran, Jean-Marc G.;
Abeel, Thomas

Publication type:

Article

Genome-scale analyses of butanol tolerance in Saccharomyces cerevisiae reveal an essential role of protein degradation.

Published in:

Biotechnology for Biofuels, 2013, v. 6, n. 1, p. 1, doi. 10.1186/1754-6834-6-48

By:

González-Ramos, Daniel;
van den Broek, Marcel;
van Maris, Antonius J. A.;
Pronk, Jack T.;
Daran, Jean-Marc G.

Publication type:

Article

Mutations in PMR1 stimulate xylose isomerase activity and anaerobic growth on xylose of engineered Saccharomyces cerevisiae by influencing manganese homeostasis.

Published in:

Scientific Reports, 2017, p. 46155, doi. 10.1038/srep46155

By:

Verhoeven, Maarten D.;
Lee, Misun;
Kamoen, Lycka;
van den Broek, Marcel;
Janssen, Dick B.;
Daran, Jean-Marc G.;
van Maris, Antonius J. A.;
Pronk, Jack T.

Publication type:

Article

The <italic>Penicillium chrysogenum</italic> transporter <italic>Pc</italic>AraT enables high-affinity, glucose-insensitive l -arabinose transport in <italic>Saccharomyces cerevisiae</italic>.

Published in:

Biotechnology for Biofuels, 2018, v. 11, p. 1, doi. 10.1186/s13068-018-1047-6

By:

Bracher, Jasmine M.;
Verhoeven, Maarten D.;
Wisselink, H. Wouter;
Crimi, Barbara;
Nijland, Jeroen G.;
Driessen, Arnold J. M.;
Klaassen, Paul;
van Maris, Antonius J. A.;
Daran, Jean-Marc G.;
Pronk, Jack T.

Publication type:

Article

A new laboratory evolution approach to select for constitutive acetic acid tolerance in Saccharomyces cerevisiae and identification of causal mutations.

Published in:

Biotechnology for Biofuels, 2016, v. 9, p. 1, doi. 10.1186/s13068-016-0583-1

By:

González‑Ramos, Daniel;
Gorter de Vries, Arthur R.;
Grijseels, Sietske S.;
van Berkum, Margo C.;
Swinnen, Steve;
van den Broek, Marcel;
Nevoigt, Elke;
Daran, Jean‑Marc G.;
Pronk, Jack T.;
van Maris, Antonius J. A.

Publication type:

Article

CRISPR-Cas9 mediated gene deletions in lager yeast Saccharomyces pastorianus.

Published in:

Microbial Cell Factories, 2017, v. 16, p. 1, doi. 10.1186/s12934-017-0835-1

By:

de Vries, Arthur R. Gorter;
de Groot, Philip A.;
van den Broek, Marcel;
Daran, Jean-Marc G.

Publication type:

Article

Stress-induced expression is enriched for evolutionarily young genes in diverse budding yeasts.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16073-3

By:

Doughty, Tyler W.;
Domenzain, Iván;
Millan-Oropeza, Aaron;
Montini, Noemi;
de Groot, Philip A.;
Pereira, Rui;
Nielsen, Jens;
Henry, Céline;
Daran, Jean-Marc G.;
Siewers, Verena;
Morrissey, John P.

Publication type:

Article

Structural, Physiological and Regulatory Analysis of Maltose Transporter Genes in Saccharomyces eubayanus CBS 12357<sup>T</sup>.

Published in:

Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01786

By:

Brickwedde, Anja;
Brouwers, Nick;
van den Broek, Marcel;
Gallego Murillo, Joan S.;
Fraiture, Julie L.;
Pronk, Jack T.;
Daran, Jean-Marc G.

Publication type:

Article

Allele-specific genome editing using CRISPR–Cas9 is associated with loss of heterozygosity in diploid yeast.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 3, p. 1362, doi. 10.1093/nar/gky1216

By:

Gorter de Vries, Arthur R;
Couwenberg, Lucas G F;
van den Broek, Marcel;
de la Torre Cortés, Pilar;
ter Horst, Jolanda;
Pronk, Jack T;
Daran, Jean-Marc G

Publication type:

Article

Evolutionary Engineering in Chemostat Cultures for Improved Maltotriose Fermentation Kinetics in Saccharomyces pastorianus Lager Brewing Yeast.

Published in:

Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01690

By:

Brickwedde, Anja;
van den Broek, Marcel;
Geertman, Jan-Maarten A.;
Magalhães, Frederico;
Kuijpers, Niels G. A.;
Gibson, Brian;
Pronk, Jack T.;
Daran, Jean-Marc G.

Publication type:

Article

Laboratory Evolution of a Saccharomyces cerevisiae × S. eubayanus Hybrid Under Simulated Lager-Brewing Conditions.

Published in:

Frontiers in Genetics, 2019, p. N.PAG, doi. 10.3389/fgene.2019.00242

By:

Gorter de Vries, Arthur R.;
Voskamp, Maaike A.;
van Aalst, Aafke C. A.;
Kristensen, Line H.;
Jansen, Liset;
van den Broek, Marcel;
Salazar, Alex N.;
Brouwers, Nick;
Abeel, Thomas;
Pronk, Jack T.;
Daran, Jean-Marc G.

Publication type:

Article

Improving Industrially Relevant Phenotypic Traits by Engineering Chromosome Copy Number in Saccharomyces pastorianus.

Published in:

Frontiers in Genetics, 2020, v. 11, p. 1, doi. 10.3389/fgene.2020.00518

By:

Gorter de Vries, Arthur R.;
Knibbe, Ewout;
van Roosmalen, Roderick;
van den Broek, Marcel;
de la Torre Cortés, Pilar;
O'Herne, Stephanie F.;
Vijverberg, Pascal A.;
el Masoudi, Anissa;
Brouwers, Nick;
Pronk, Jack T.;
Daran, Jean-Marc G.

Publication type:

Article

In vivo recombination of Saccharomyces eubayanus maltose-transporter genes yields a chimeric transporter that enables maltotriose fermentation.

Published in:

PLoS Genetics, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pgen.1007853

By:

Brouwers, Nick;
Gorter de Vries, Arthur R.;
van den Broek, Marcel;
Weening, Susan M.;
Elink Schuurman, Tom D.;
Kuijpers, Niels G. A.;
Pronk, Jack T.;
Daran, Jean-Marc G.

Publication type:

Article