Works matching AU Dantas, Gautam

Results: 71

Tackling antibiotic resistance.

Published in:

Nature Reviews Microbiology, 2011, v. 9, n. 12, p. 894, doi. 10.1038/nrmicro2693

By:

Bush, Karen;
Courvalin, Patrice;
Dantas, Gautam;
Davies, Julian;
Eisenstein, Barry;
Huovinen, Pentti;
Jacoby, George A.;
Kishony, Roy;
Kreiswirth, Barry N.;
Kutter, Elizabeth;
Lerner, Stephen A.;
Levy, Stuart;
Lewis, Kim;
Lomovskaya, Olga;
Miller, Jeffrey H.;
Mobashery, Shahriar;
Piddock, Laura J. V.;
Projan, Steven;
Thomas, Christopher M.;
Tomasz, Alexander

Publication type:

Article

Transcriptomic analysis illuminates genes involved in chlorophyll synthesis after nitrogen starvation in Acaryochloris sp. CCMEE 5410.

Published in:

Photosynthesis Research, 2016, v. 129, n. 2, p. 171, doi. 10.1007/s11120-016-0279-1

By:

Yoneda, Aki;
Wittmann, Bruce;
King, Jeremy;
Blankenship, Robert;
Dantas, Gautam

Publication type:

Article

Structural and molecular rationale for the diversification of resistance mediated by the Antibiotic_NAT family.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03219-w

By:

Stogios, Peter J.;
Bordeleau, Emily;
Xu, Zhiyu;
Skarina, Tatiana;
Evdokimova, Elena;
Chou, Sommer;
Diorio-Toth, Luke;
D'Souza, Alaric W.;
Patel, Sanket;
Dantas, Gautam;
Wright, Gerard D.;
Savchenko, Alexei

Publication type:

Article

Spontaneous Bacterial Peritonitis Caused by Bordetella hinzii.

Published in:

2021

By:

Wang, Grace C.;
Wallace, Miranda J.;
Krishnan, Gayathri;
Olson, Patrick D.;
Carlson, Abigail L.;
Dantas, Gautam;
Fleckenstein, James M.

Publication type:

journal article

Missing Microbes: How the Overuse of Antibiotics is Fueling our Modern Plagues.

Published in:

American Journal of Human Biology, 2015, v. 27, n. 1, p. 144, doi. 10.1002/ajhb.22659

By:

Dantas, Gautam

Publication type:

Article

Complex interactions between the microbiome and cancer immune therapy.

Published in:

Critical Reviews in Clinical Laboratory Sciences, 2019, v. 56, n. 8, p. 567, doi. 10.1080/10408363.2019.1660303

By:

Schwartz, Drew J.;
Rebeck, Olivia N.;
Dantas, Gautam

Publication type:

Article

Increased triacylglycerol production in Rhodococcus opacus by overexpressing transcriptional regulators.

Published in:

Biotechnology for Biofuels & Bioproducts, 2024, v. 17, n. 1, p. 1, doi. 10.1186/s13068-024-02523-3

By:

Anthony, Winston E.;
Geng, Weitao;
Diao, Jinjin;
Carr, Rhiannon R.;
Wang, Bin;
Ning, Jie;
Moon, Tae Seok;
Dantas, Gautam;
Zhang, Fuzhong

Publication type:

Article

Microbiome Restoration by RBX2660 Does Not Preclude Recurrence of Multidrug-Resistant Urinary Tract Infection Following Subsequent Antibiotic Exposure: A Case Report.

Published in:

Open Forum Infectious Diseases, 2020, v. 7, n. 3, p. N.PAG, doi. 10.1093/ofid/ofaa042

By:

Keen, Eric C;
Tasoff, Preston;
Hink, Tiffany;
Reske, Kimberly A;
Burnham, Carey-Ann D;
Dantas, Gautam;
Kwon, Jennie H;
Dubberke, Erik R

Publication type:

Article

2847. Comparative Genomics and Clonal Tracking of Multi-drug-Resistant Uropathogens Implicates the Fecal Microbiome as a Potential Reservoir for Recurrent Urinary Tract Infections.

Published in:

Open Forum Infectious Diseases, 2019, v. 6, p. S70, doi. 10.1093/ofid/ofz359.152

By:

Thanert, Robert;
Reske, Kimberly;
Hink, Tiffany;
Wallace, Meghan;
Wang, Bin;
Schwartz, Drew;
Burnham, Carey-Ann;
Seiler, Sondra;
Cass, Candice;
Dubberke, Erik R;
Dantas, Gautam;
Kwon, Jennie H

Publication type:

Article

Multi-omics investigation of Clostridioides difficile-colonized patients reveals pathogen and commensal correlates of C. difficile pathogenesis.

Published in:

eLife, 2022, p. 1, doi. 10.7554/eLife.72801

By:

Fishbein, Skye R. S.;
Robinson, John I.;
Hink, Tiffany;
Reske, Kimberly A.;
Newcomer, Erin P.;
Burnham, Carey-Ann D.;
Henderson, Jeffrey P.;
Dubberke, Erik R.;
Dantas, Gautam

Publication type:

Article

Genetically stable CRISPR-based kill switches for engineered microbes.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28163-5

By:

Rottinghaus, Austin G.;
Ferreiro, Aura;
Fishbein, Skye R. S.;
Dantas, Gautam;
Moon, Tae Seok

Publication type:

Article

Antibiotic perturbation of the preterm infant gut microbiome and resistome.

Published in:

Gut Microbes, 2016, v. 7, n. 5, p. 443, doi. 10.1080/19490976.2016.1218584

By:

Gasparrini, Andrew J.;
Crofts, Terence S.;
Gibson, Molly K.;
Tarr, Phillip I.;
Warner, Barbara B.;
Dantas, Gautam

Publication type:

Article

Functional Characterization of Bacteria Isolated from Ancient Arctic Soil Exposes Diverse Resistance Mechanisms to Modern Antibiotics.

Published in:

PLoS ONE, 2015, v. 10, n. 3, p. 1, doi. 10.1371/journal.pone.0069533

By:

Perron, Gabriel G.;
Whyte, Lyle;
Turnbaugh, Peter J.;
Goordial, Jacqueline;
Hanage, William P.;
Dantas, Gautam;
Desai, Michael M.

Publication type:

Article

Pediatric Fecal Microbiota Harbor Diverse and Novel Antibiotic Resistance Genes.

Published in:

PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0078822

By:

Moore, Aimée M.;
Patel, Sanket;
Forsberg, Kevin J.;
Wang, Bin;
Bentley, Gayle;
Razia, Yasmin;
Qin, Xuan;
Tarr, Phillip I.;
Dantas, Gautam

Publication type:

Article

A functional metagenomic approach for expanding the synthetic biology toolbox for biomass conversion.

Published in:

Molecular Systems Biology, 2010, v. 6, n. 1, p. 1, doi. 10.1038/msb.2010.16

By:

Sommer, Morten OA;
Church, George M;
Dantas, Gautam

Publication type:

Article

A low‐cost, high‐throughput microfluidic nano‐culture platform for functional metagenomics.

Published in:

Biotechnology Progress, 2023, v. 39, n. 2, p. 1, doi. 10.1002/btpr.3317

By:

Kaur, Manpreet;
Ferreiro, Aura;
Hung, Cheng‐Yu;
Dantas, Gautam;
Ramasubramanian, Anand K.

Publication type:

Article

1H, 13C and 15N Resonance Assignments of URNdesign, a Computationally Redesigned RRM Protein.

Published in:

Journal of Biomolecular NMR, 2005, v. 33, n. 2, p. 135, doi. 10.1007/s10858-005-1928-4

By:

Dobson, Neil;
Dantas, Gautam;
Varani, Gabriele

Publication type:

Article

Impact of international travel and diarrhea on gut microbiome and resistome dynamics.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-34862-w

By:

Boolchandani, Manish;
Blake, Kevin S.;
Tilley, Drake H.;
Cabada, Miguel M.;
Schwartz, Drew J.;
Patel, Sanket;
Morales, Maria Luisa;
Meza, Rina;
Soto, Giselle;
Isidean, Sandra D.;
Porter, Chad K.;
Simons, Mark P.;
Dantas, Gautam

Publication type:

Article

Gut microbiome composition may be an indicator of preclinical Alzheimer's disease.

Published in:

Science Translational Medicine, 2023, v. 15, n. 700, p. 1, doi. 10.1126/scitranslmed.abo2984

By:

Ferreiro, Aura L.;
Choi, JooHee;
Ryou, Jian;
Newcomer, Erin P.;
Thompson, Regina;
Bollinger, Rebecca M.;
Hall-Moore, Carla;
Ndao, I. Malick;
Sax, Laurie;
Benzinger, Tammie L. S.;
Stark, Susan L.;
Holtzman, David M.;
Fagan, Anne M.;
Schindler, Suzanne E.;
Cruchaga, Carlos;
Butt, Omar H.;
Morris, John C.;
Tarr, Phillip I.;
Ances, Beau M.;
Dantas, Gautam

Publication type:

Article

Gut pathogen colonization precedes bloodstream infection in the neonatal intensive care unit.

Published in:

Science Translational Medicine, 2023, v. 15, n. 694, p. 1, doi. 10.1126/scitranslmed.adg5562

By:

Schwartz, Drew J.;
Shalon, Nitan;
Wardenburg, Kate;
DeVeaux, Anna;
Wallace, Meghan A.;
Hall-Moore, Carla;
Ndao, I. Malick;
Sullivan, Janice E.;
Radmacher, Paula;
Escobedo, Marilyn;
Burnham, Carey-Ann D.;
Warner, Barbara B.;
Tarr, Phillip I.;
Dantas, Gautam

Publication type:

Article

Microbiome-targeting therapies in the neonatal intensive care unit: safety and efficacy.

Published in:

Gut Microbes, 2023, v. 15, n. 1, p. 1, doi. 10.1080/19490976.2023.2221758

By:

DeVeaux, Anna;
Jian Ryou;
Dantas, Gautam;
Warner, Barbara B.;
Tarr, Phillip I.

Publication type:

Article

Antibiotic-driven intestinal dysbiosis in pediatric short bowel syndrome is associated with persistently altered microbiome functions and gut-derived bloodstream infections.

Published in:

Gut Microbes, 2021, v. 13, n. 1, p. 1, doi. 10.1080/19490976.2021.1940792

By:

Thänert, Robert;
Thänert, Anna;
Ou, Jocelyn;
Bajinting, Adam;
Burnham, Carey-Ann D.;
Engelstad, Holly J.;
Tecos, Maria E.;
Ndao, I. Malick;
Hall-Moore, Carla;
Rouggly-Nickless, Colleen;
Carl, Mike A.;
Rubin, Deborah C.;
Davidson, Nicholas O.;
Tarr, Phillip I.;
Warner, Barbara B.;
Dantas, Gautam;
Warner, Brad W.

Publication type:

Article

Correction to: Understanding the impact of antibiotic perturbation on the human microbiome.

Published in:

2021

By:

Schwartz, Drew J.;
Langdon, Amy E.;
Dantas, Gautam

Publication type:

Correction Notice

Microbiota restoration reduces antibiotic-resistant bacteria gut colonization in patients with recurrent Clostridioides difficile infection from the open-label PUNCH CD study.

Published in:

Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00843-9

By:

Langdon, Amy;
Schwartz, Drew J.;
Bulow, Christopher;
Sun, Xiaoqing;
Hink, Tiffany;
Reske, Kimberly A.;
Jones, Courtney;
Burnham, Carey-Ann D.;
Dubberke, Erik R.;
Dantas, Gautam

Publication type:

Article

Microbiota restoration reduces antibiotic-resistant bacteria gut colonization in patients with recurrent Clostridioides difficile infection from the open-label PUNCH CD study.

Published in:

Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00843-9

By:

Langdon, Amy;
Schwartz, Drew J.;
Bulow, Christopher;
Sun, Xiaoqing;
Hink, Tiffany;
Reske, Kimberly A.;
Jones, Courtney;
Burnham, Carey-Ann D.;
Dubberke, Erik R.;
Dantas, Gautam

Publication type:

Article

The microbiome and resistome of chimpanzees, gorillas, and humans across host lifestyle and geography.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2020, v. 14, n. 6, p. 1584, doi. 10.1038/s41396-020-0634-2

By:

Campbell, Tayte P.;
Sun, Xiaoqing;
Patel, Vishal H.;
Sanz, Crickette;
Morgan, David;
Dantas, Gautam

Publication type:

Article

Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 1, p. 207, doi. 10.1038/ismej.2014.106

By:

Gibson, Molly K;
Forsberg, Kevin J;
Dantas, Gautam

Publication type:

Article

The gut microbiome as an early biomarker of preclinical Alzheimer disease.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2023, v. 19, p. 1, doi. 10.1002/alz.078811

By:

Ances, Beau;
Ferreiro, Aura L.;
Choi, JooHee;
Ryou, Jian;
Newcomer, Erin;
Stark, Susan L.;
Benzinger, Tammie L.S.;
Holtzman, David M.;
Fagan, Anne M.;
Schindler, Suzanne E.;
Cruchaga, Carlos;
Butt, Omar Hameed;
Morris, John C;
Tarr, Philip;
Dantas, Gautam

Publication type:

Article

Metagenomic signatures of extraintestinal bacterial infection in the febrile term infant gut microbiome.

Published in:

Microbiome, 2025, v. 13, n. 1, p. 1, doi. 10.1186/s40168-025-02079-w

By:

DeVeaux, Anna L.;
Hall-Moore, Carla;
Shaikh, Nurmohammad;
Wallace, Meghan;
Burnham, Carey-Ann D.;
Schnadower, David;
Kuppermann, Nathan;
Mahajan, Prashant;
Ramilo, Octavio;
Tarr, Phillip I.;
Dantas, Gautam;
Schwartz, Drew J.

Publication type:

Article

Contextual organismality: Beyond pattern to process in the emergence of organisms.

Published in:

Evolution, 2016, v. 70, n. 12, p. 2669, doi. 10.1111/evo.13078

By:

Díaz‐Muñoz, Samuel L.;
Boddy, Amy M.;
Dantas, Gautam;
Waters, Christopher M.;
Bronstein, Judith L.

Publication type:

Article

Genomic Characterization of Antibiotic Resistant Escherichia coli Isolated From Domestic Chickens in Pakistan.

Published in:

Frontiers in Microbiology, 2020, v. 10, p. 1, doi. 10.3389/fmicb.2019.03052

By:

Rafique, Muhammad;
Potter, Robert F.;
Ferreiro, Aura;
Wallace, Meghan A.;
Rahim, Abdul;
Ali Malik, Akbar;
Siddique, Naila;
Abbas, Muhammad Athar;
D'Souza, Alaric W.;
Burnham, Carey-Ann D.;
Ali, Naeem;
Dantas, Gautam

Publication type:

Article

Genomic and functional techniques to mine the microbiome for novel antimicrobials and antimicrobial resistance genes.

Published in:

Annals of the New York Academy of Sciences, 2017, v. 1388, n. 1, p. 42, doi. 10.1111/nyas.13257

By:

Adu‐Oppong, Boahemaa;
Gasparrini, Andrew J.;
Dantas, Gautam

Publication type:

Article

Phenotypic and genotypic characterization of linezolid-resistant Enterococcus faecium from the USA and Pakistan.

Published in:

2019

By:

Wardenburg, Kate E;
Potter, Robert F;
D'Souza, Alaric W;
Hussain, Tahir;
Wallace, Meghan A;
Andleeb, Saadia;
Burnham, Carey-Ann D;
Dantas, Gautam

Publication type:

journal article

Functional mining of novel terpene synthases from metagenomes.

Published in:

Biotechnology for Biofuels & Bioproducts, 2022, v. 15, n. 1, p. 1, doi. 10.1186/s13068-022-02189-9

By:

Suryang Kwak;
Nathan Crook;
Aki Yoneda;
Naomi Ahn;
Jie Ning;
Jiye Cheng;
Dantas, Gautam

Publication type:

Article

Breakpoint beware: reliance on historical breakpoints for Enterobacteriaceae leads to discrepancies in interpretation of susceptibility testing for carbapenems and cephalosporins and gaps in detection of carbapenem-resistant organisms.

Published in:

European Journal of Clinical Microbiology & Infectious Diseases, 2020, v. 39, n. 1, p. 187, doi. 10.1007/s10096-019-03711-y

By:

Yarbrough, Melanie L.;
Wallace, Meghan A.;
Potter, Robert F.;
D'Souza, Alaric W.;
Dantas, Gautam;
Burnham, Carey-Ann D.

Publication type:

Article

The human microbiome harbors a diverse reservoir of antibiotic resistance genes.

Published in:

Virulence, 2010, v. 1, n. 4, p. 299, doi. 10.4161/viru.1.4.12010

By:

Sommer, Morten O.A.;
Church, George M.;
Dantas, Gautam

Publication type:

Article

Genomic and Metagenomic Approaches for Predictive Surveillance of Emerging Pathogens and Antibiotic Resistance.

Published in:

Clinical Pharmacology & Therapeutics, 2019, v. 106, n. 3, p. 512, doi. 10.1002/cpt.1535

By:

Sukhum, Kimberley V.;
Diorio‐Toth, Luke;
Dantas, Gautam

Publication type:

Article

High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004557

By:

Kaminski, James;
Gibson, Molly K.;
Franzosa, Eric A.;
Segata, Nicola;
Dantas, Gautam;
Huttenhower, Curtis

Publication type:

Article

Sequence-structure-function characterization of the emerging tetracycline destructase family of antibiotic resistance enzymes.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06023-w

By:

Blake, Kevin S.;
Kumar, Hirdesh;
Loganathan, Anisha;
Williford, Emily E.;
Diorio-Toth, Luke;
Xue, Yao-Peng;
Tang, Wai Kwan;
Campbell, Tayte P.;
Chong, David D.;
Angtuaco, Steven;
Wencewicz, Timothy A.;
Tolia, Niraj H.;
Dantas, Gautam

Publication type:

Article

Substantial overlap between symptomatic and asymptomatic genitourinary microbiota states.

Published in:

Microbiome, 2022, v. 10, n. 1, p. 1, doi. 10.1186/s40168-021-01204-9

By:

Adu-Oppong, Boahemaa;
Thänert, Robert;
Wallace, Meghan A.;
Burnham, Carey-Ann D.;
Dantas, Gautam

Publication type:

Article

Assessment of the Urinary Microbiota of MSM Using Urine Culturomics Reveals a Diverse Microbial Environment.

Published in:

Clinical Chemistry, 2022, v. 68, n. 1, p. 192, doi. 10.1093/clinchem/hvab199

By:

Sawhney, Sanjam S.;
Johnson, Caitlin;
Shupe, Angela;
Fine, Jeremy;
Dantas, Gautam;
Burnham, Carey-Ann D.;
Yarbrough, Melanie L.

Publication type:

Article

Genomic Prediction of Antimicrobial Resistance: Ready or Not, Here It Comes!

Published in:

Clinical Chemistry, 2020, v. 66, n. 10, p. 1278, doi. 10.1093/clinchem/hvaa172

By:

Ransom, Eric M.;
Potter, Robert F.;
Dantas, Gautam;
Burnham, Carey-Ann D.

Publication type:

Article

In Silico Analysis of Gardnerella Genomospecies Detected in the Setting of Bacterial Vaginosis.

Published in:

Clinical Chemistry, 2019, v. 65, n. 11, p. 1375, doi. 10.1373/clinchem.2019.305474

By:

Potter, Robert F.;
Burnham, Carey-Ann D.;
Dantas, Gautam

Publication type:

Article

Checkpoint Checkmate: Microbiota Modulation of Cancer Immunotherapy.

Published in:

Clinical Chemistry, 2018, v. 64, n. 9, p. 1280, doi. 10.1373/clinchem.2017.286229

By:

Keen, Eric C.;
Crofts, Terence S.;
Dantas, Gautam

Publication type:

Article

Publisher Correction: Structure of anhydrotetracycline-bound Tet(X6) reveals the mechanism for inhibition of type 1 tetracycline destructases.

Published in:

2023

By:

Kumar, Hirdesh;
Williford, Emily E.;
Blake, Kevin S.;
Virgin-Downey, Brett;
Dantas, Gautam;
Wencewicz, Timothy A.;
Tolia, Niraj H.

Publication type:

Correction Notice

Structure of anhydrotetracycline-bound Tet(X6) reveals the mechanism for inhibition of type 1 tetracycline destructases.

Published in:

Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-04792-4

By:

Kumar, Hirdesh;
Williford, Emily E.;
Blake, Kevin S.;
Virgin-Downey, Brett;
Dantas, Gautam;
Wencewicz, Timothy A.;
Tolia, Niraj H.

Publication type:

Article

Superficieibacter electus gen. nov., sp. nov., an Extended-Spectrum β-Lactamase Possessing Member of the Enterobacteriaceae Family, Isolated From Intensive Care Unit Surfaces.

Published in:

Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.01629

By:

Potter, Robert F.;
D'Souza, Alaric W.;
Wallace, Meghan A.;
Shupe, Angela;
Patel, Sanket;
Gul, Danish;
Kwon, Jennie H.;
Beatty, Wandy;
Andleeb, Saadia;
Burnham, Carey-Ann D.;
Dantas, Gautam

Publication type:

Article

Simulating Serial-Target Antibacterial Drug Synergies Using Flux Balance Analysis.

Published in:

PLoS ONE, 2016, v. 11, n. 1, p. 1, doi. 10.1371/journal.pone.0147651

By:

Krueger, Andrew S.;
Munck, Christian;
Dantas, Gautam;
Church, George M.;
Galagan, James;
Lehár, Joseph;
Sommer, Morten O. A.

Publication type:

Article

Cotrimoxazole Prophylaxis Increases Resistance Gene Prevalence and α-Diversity but Decreases β-Diversity in the Gut Microbiome of Human Immunodeficiency Virus–Exposed, Uninfected Infants.

Published in:

Clinical Infectious Diseases, 2020, v. 71, n. 11, p. 2858, doi. 10.1093/cid/ciz1186

By:

D'Souza, Alaric W;
Moodley-Govender, Eshia;
Berla, Bertram;
Kelkar, Tejas;
Wang, Bin;
Sun, Xiaoqing;
Daniels, Brodie;
Coutsoudis, Anna;
Trehan, Indi;
Dantas, Gautam

Publication type:

Article

Synergistic, collaterally sensitive β-lactam combinations suppress resistance in MRSA.

Published in:

Nature Chemical Biology, 2015, v. 11, n. 11, p. 855, doi. 10.1038/nchembio.1911

By:

Gonzales, Patrick R;
Pesesky, Mitchell W;
Bouley, Renee;
Ballard, Anna;
Biddy, Brent A;
Suckow, Mark A;
Wolter, William R;
Schroeder, Valerie A;
Burnham, Carey-Ann D;
Mobashery, Shahriar;
Chang, Mayland;
Dantas, Gautam

Publication type:

Article