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A look beyond the QR code of SNARE proteins.
- Published in:
- Protein Science: A Publication of the Protein Society, 2024, v. 33, n. 9, p. 1, doi. 10.1002/pro.5158
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- Article
Assessing the potential of atomistic molecular dynamics simulations to probe reversible protein-protein recognition and binding.
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- Scientific Reports, 2015, p. 10549, doi. 10.1038/srep10549
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- Article
PeSTo: parameter-free geometric deep learning for accurate prediction of protein binding interfaces.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37701-8
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- Article
Active Site-Induced Evolutionary Constraints Follow Fold Polarity Principles in Soluble Globular Enzymes.
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- Molecular Biology & Evolution, 2019, v. 36, n. 8, p. 1728, doi. 10.1093/molbev/msz096
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- Article
A rheostat mechanism governs the bifurcation of carbon flux in mycobacteria.
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- Nature Communications, 2016, v. 7, n. 8, p. 12527, doi. 10.1038/ncomms12527
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- Article
Cryo-EM structure of aerolysin variants reveals a novel protein fold and the pore-formation process.
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- Nature Communications, 2016, v. 7, n. 7, p. 12062, doi. 10.1038/ncomms12062
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- Article
Alzheimer's disease mutations in APP but not γ-secretase modulators affect epsilon-cleavage-dependent AICD production.
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- Nature Communications, 2013, v. 4, n. 8, p. 2246, doi. 10.1038/ncomms3246
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- Article
The Lipopolysaccharide from Capnocytophaga canimorsus Reveals an Unexpected Role of the Core-Oligosaccharide in MD-2 Binding.
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- PLoS Pathogens, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.ppat.1002667
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- Article
Transcriptional regulatory logic of the diurnal cycle in the mouse liver.
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- PLoS Biology, 2017, v. 15, n. 4, p. 1, doi. 10.1371/journal.pbio.2001069
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- Article
On the active site of mononuclear B1 metallo β-lactamases: a computational study.
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- Journal of Computer-Aided Molecular Design, 2012, v. 26, n. 4, p. 425, doi. 10.1007/s10822-012-9571-0
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- Article
Molecular dynamics simulations of apocupredoxins: insights into the formation and stabilization of copper sites under entatic control.
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- Journal of Biological Inorganic Chemistry (JBIC), 2014, v. 19, n. 4/5, p. 565, doi. 10.1007/s00775-014-1108-7
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- Article
A coiled coil switch mediates cold sensing by the thermosensory protein DesK.
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- Molecular Microbiology, 2015, v. 98, n. 2, p. 258, doi. 10.1111/mmi.13118
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- Article
Atypical DNA recognition mechanism used by the EspR virulence regulator of Mycobacterium tuberculosis.
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- Molecular Microbiology, 2011, v. 82, n. 1, p. 251, doi. 10.1111/j.1365-2958.2011.07813.x
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- Article
The helical content of the YscP molecular ruler determines the length of the Yersinia injectisome.
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- Molecular Microbiology, 2009, v. 71, n. 3, p. 692, doi. 10.1111/j.1365-2958.2008.06556.x
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- Article
Detection and sequence/structure mapping of biophysical constraints to protein variation in saturated mutational libraries and protein sequence alignments with a dedicated server.
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- BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1124-4
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- Article
ComEA Is Essential for the Transfer of External DNA into the Periplasm in Naturally Transformable <i>Vibrio cholerae</i> Cells.
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- PLoS Genetics, 2014, v. 10, n. 1, p. 1, doi. 10.1371/journal.pgen.1004066
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- Article
State-of-the-art web services for de novo protein structure prediction.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa139
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- Article
Mapping the sensing spots of aerolysin for single oligonucleotides analysis.
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- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-05108-5
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- Article
Assembly of the Transmembrane Domain of E. coli PhoQ Histidine Kinase: Implications for Signal Transduction from Molecular Simulations.
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- PLoS Computational Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002878
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- Article
CLoNe: automated clustering based on local density neighborhoods for application to biomolecular structural ensembles.
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- Bioinformatics, 2021, v. 37, n. 7, p. 921, doi. 10.1093/bioinformatics/btaa742
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- Article
About the need to make computational models of biological macromolecules available and discoverable.
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- Bioinformatics, 2020, v. 36, n. 9, p. 2952, doi. 10.1093/bioinformatics/btaa086
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- Article
An experiment-informed signal transduction model for the role of the Staphylococcus aureus MecR1 protein in β-lactam resistance.
- Published in:
- Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-55923-z
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- Article
TAL Effectors Specificity Stems from Negative Discrimination.
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- PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0080261
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- Article
A further leap of improvement in tertiary structure prediction in CASP13 prompts new routes for future assessments.
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- Proteins, 2019, v. 87, n. 12, p. 1100, doi. 10.1002/prot.25787
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- Article
Assessment of data‐assisted prediction by inclusion of crosslinking/mass‐spectrometry and small angle X‐ray scattering data in the 12<sup>th</sup> Critical Assessment of protein Structure Prediction experiment.
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- Proteins, 2018, v. 86, n. 1, p. 215, doi. 10.1002/prot.25442
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- Article
Assessment of hard target modeling in CASP12 reveals an emerging role of alignment‐based contact prediction methods.
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- Proteins, 2018, v. 86, n. 1, p. 97, doi. 10.1002/prot.25423
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- Article
Definition and classification of evaluation units for tertiary structure prediction in CASP12 facilitated through semi‐automated metrics.
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- Proteins, 2018, v. 86, n. 1, p. 16, doi. 10.1002/prot.25403
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- Article
Substrate binding to mononuclear metallo-β-lactamase from Bacillus cereus.
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- Proteins, 2004, v. 54, n. 3, p. 412, doi. 10.1002/prot.10554
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- Article
Palmitoylated calnexin is a key component of the ribosome-translocon complex.
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- EMBO Journal, 2012, v. 31, n. 7, p. 1823, doi. 10.1038/emboj.2012.15
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- Article
Bicc1 ribonucleoprotein complexes specifying organ laterality are licensed by ANKS6-induced structural remodeling of associated ANKS3.
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- PLoS Biology, 2023, v. 21, n. 9, p. 1, doi. 10.1371/journal.pbio.3002302
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- Article
Cooperative motion of a key positively charged residue and metal ions for DNA replication catalyzed by human DNA Polymerase-η.
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- Nucleic Acids Research, 2016, v. 44, n. 6, p. 2827, doi. 10.1093/nar/gkw128
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- Article
Crystal structure of Hop2-Mnd1 and mechanistic insights into its role in meiotic recombination.
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- Nucleic Acids Research, 2015, v. 43, n. 7, p. 3841, doi. 10.1093/nar/gkv172
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- Article
Context-aware geometric deep learning for protein sequence design.
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- Nature Communications, 2024, v. 15, p. 1, doi. 10.1038/s41467-024-50571-y
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- Article
Btk SH2-kinase interface is critical for allosteric kinase activation and its targeting inhibits B-cell neoplasms.
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- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16128-5
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- Article
Single-molecule sensing of peptides and nucleic acids by engineered aerolysin nanopores.
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- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12690-9
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- Article
In-Depth Analysis of Hyaline Fibromatosis Syndrome Frameshift Mutations at the Same Site Reveal the Necessity of Personalized Therapy.
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- Human Mutation, 2013, v. 34, n. 7, p. 1005, doi. 10.1002/humu.22324
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Solute–Solvent Charge Transfer in Aqueous Solution.
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- ChemPhysChem, 2005, v. 6, n. 9, p. 1715, doi. 10.1002/cphc.200500039
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- Article
Ser133 phosphate-KIX interactions in the CREB-CBP complex: an ab initio molecular dynamics study.
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- European Biophysics Journal, 2001, v. 30, n. 1, p. 75, doi. 10.1007/s002490000112
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Visualization, Interactive Handling and Simulation of Molecules in Commodity Augmented Reality in Web Browsers Using moleculARweb's Virtual Modeling Kits.
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- Chimia, 2022, v. 76, n. 1/2, p. 145, doi. 10.2533/chimia.2022.145
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How Structural and Physicochemical Determinants Shape Sequence Constraints in a Functional Enzyme.
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- PLoS ONE, 2015, v. 10, n. 2, p. 1, doi. 10.1371/journal.pone.0118684
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- Article
Molecular assembly of the aerolysin pore reveals a swirling membrane-insertion mechanism.
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- Nature Chemical Biology, 2013, v. 9, n. 10, p. 623, doi. 10.1038/nchembio.1312
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- Article
Dual Chaperone Role of the C-Terminal Propeptide in Folding and Oligomerization of the Pore-Forming Toxin Aerolysin.
- Published in:
- PLoS Pathogens, 2011, v. 7, n. 7, p. 1, doi. 10.1371/journal.ppat.1002135
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- Article