Works by D’Eustachio, Peter

Results: 45

Isolation of a cDNA clone corresponding to an X-linked gene family (XLR) closely linked to the murine immunodeficiency disorder xid.

Published in:

Nature, 1985, v. 314, n. 6009, p. 369, doi. 10.1038/314369a0

By:

Cohen, David I.;
Hedrick, Stephen M.;
Nielsen, Ellen A.;
D'Eustachio, Peter;
Ruddle, Frank;
Steinberg, Alfred D.;
Paul, William E.;
Davis, Mark M.

Publication type:

Article

Reactome enhanced pathway visualization.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3461, doi. 10.1093/bioinformatics/btx441

By:

Sidiropoulos, Konstantinos;
Viteri, Guilherme;
Sevilla, Cristoffer;
Jupe, Steve;
Webber, Marissa;
Orlic-Milacic, Marija;
Jassal, Bijay;
May, Bruce;
Shamovsky, Veronica;
Duenas, Corina;
Rothfels, Karen;
Matthews, Lisa;
Heeyeon Song;
Stein, Lincoln;
Haw, Robin;
D'eustachio, Peter;
Peipei Ping;
Hermjakob, Henning;
Fabregat, Antonio

Publication type:

Article

Illuminate the Functions of Dark Proteins Using the Reactome‐IDG Web Portal.

Published in:

Current Protocols, 2023, v. 3, n. 7, p. 1, doi. 10.1002/cpz1.845

By:

Beavers, Deidre;
Brunson, Timothy;
Sanati, Nasim;
Matthews, Lisa;
Haw, Robin;
Shorser, Solomon;
Sevilla, Cristoffer;
Viteri, Guilherme;
Conley, Patrick;
Rothfels, Karen;
Hermjakob, Henning;
Stein, Lincoln;
D'Eustachio, Peter;
Wu, Guanming

Publication type:

Article

Biocuration of a Transcription Factors Network Involved in Submergence Tolerance during Seed Germination and Coleoptile Elongation in Rice (Oryza sativa).

Published in:

Plants (2223-7747), 2023, v. 12, n. 11, p. 2146, doi. 10.3390/plants12112146

By:

Naithani, Sushma;
Mohanty, Bijayalaxmi;
Elser, Justin;
D'Eustachio, Peter;
Jaiswal, Pankaj

Publication type:

Article

Chromosomal Location of the Mouse Gene that Encodes the Myelin-Associated Glycoproteins.

Published in:

Journal of Neurochemistry, 1988, v. 50, n. 2, p. 589, doi. 10.1111/j.1471-4159.1988.tb02951.x

By:

D'Eustachio, Peter;
Colman, David R.;
Salzer, James L.

Publication type:

Article

The small nuclear GTPase Ran: How much does it run?

Published in:

BioEssays, 1996, v. 18, n. 2, p. 103, doi. 10.1002/bies.950180206

By:

Rush, Mark G.;
Drivas, George;
D'eustachio, Peter

Publication type:

Article

Correction: Toll-Like Receptor Signaling in Vertebrates: Testing the Integration of Protein, Complex, and Pathway Data in the Protein Ontology Framework.

Published in:

PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0131148

By:

Arighi, Cecilia;
Shamovsky, Veronica;
Masci, Anna Maria;
Ruttenberg, Alan;
Smith, Barry;
Natale, Darren A.;
Wu, Cathy;
D’Eustachio, Peter

Publication type:

Article

Toll-Like Receptor Signaling in Vertebrates: Testing the Integration of Protein, Complex, and Pathway Data in the Protein Ontology Framework.

Published in:

PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0122978

By:

Arighi, Cecilia;
Shamovsky, Veronica;
Masci, Anna Maria;
Ruttenberg, Alan;
Smith, Barry;
Natale, Darren A.;
Wu, Cathy;
D’Eustachio, Peter

Publication type:

Article

Reactome graph database: Efficient access to complex pathway data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005968

By:

Fabregat, Antonio;
Korninger, Florian;
Viteri, Guilherme;
Sidiropoulos, Konstantinos;
Marin-Garcia, Pablo;
Ping, Peipei;
Wu, Guanming;
Stein, Lincoln;
D’Eustachio, Peter;
Hermjakob, Henning

Publication type:

Article

Genetic Toxicology Association - Fall Meeting 1984.

Published in:

Journal of Applied Toxicology, 1985, v. 5, n. 5, p. 342, doi. 10.1002/jat.2550050515

By:

Szabo, Paul;
Henderson, Ann S.;
D'Eustachio, Peter

Publication type:

Article

Using Reactome to build an autophagy mechanism knowledgebase.

Published in:

Autophagy, 2021, v. 17, n. 6, p. 1543, doi. 10.1080/15548627.2020.1761659

By:

Varusai, Thawfeek Mohamed;
Jupe, Steven;
Sevilla, Cristoffer;
Matthews, Lisa;
Gillespie, Marc;
Stein, Lincoln;
Wu, Guanming;
D'Eustachio, Peter;
Metzakopian, Emmanouil;
Hermjakob, Henning

Publication type:

Article

Biochemical pathways represented by Gene Ontology-Causal Activity Models identify distinct phenotypes resulting from mutations in pathways.

Published in:

Genetics, 2023, v. 225, n. 2, p. 1, doi. 10.1093/genetics/iyad152

By:

Hill, David P.;
Drabkin, Harold J.;
Smith, Cynthia L.;
Van Auken, Kimberly M.;
D'Eustachio, Peter

Publication type:

Article

The BioPAX community standard for pathway data sharing.

Published in:

2010

By:

Demir, Emek;
Cary, Michael P;
Paley, Suzanne;
Fukuda, Ken;
Lemer, Christian;
Vastrik, Imre;
Wu, Guanming;
D'Eustachio, Peter;
Schaefer, Carl;
Luciano, Joanne;
Schacherer, Frank;
Martinez-Flores, Irma;
Hu, Zhenjun;
Jimenez-Jacinto, Veronica;
Joshi-Tope, Geeta;
Kandasamy, Kumaran;
Lopez-Fuentes, Alejandra C;
Mi, Huaiyu;
Pichler, Elgar;
Rodchenkov, Igor

Publication type:

Correction Notice

The BioPAX community standard for pathway data sharing.

Published in:

Nature Biotechnology, 2010, v. 28, n. 9, p. 935, doi. 10.1038/nbt.1666

By:

Demir, Emek;
Cary, Michael P.;
Paley, Suzanne;
Fukuda, Ken;
Lemer, Christian;
Vastrik, Imre;
Wu, Guanming;
D'Eustachio, Peter;
Schaefer, Carl;
Luciano, Joanne;
Schacherer, Frank;
Martinez-Flores, Irma;
Hu, Zhenjun;
Jimenez-Jacinto, Veronica;
Joshi-Tope, Geeta;
Kandasamy, Kumaran;
Lopez-Fuentes, Alejandra C.;
Mi, Huaiyu;
Pichler, Elgar;
Rodchenkov, Igor

Publication type:

Article

The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics.

Published in:

PLoS Biology, 2003, v. 1, n. 11, p. 1, doi. 10.1371/journal.pbio.0000045

By:

Stein, Lincoln D;
Bao, Zhirong;
Blasiar, Darin;
Blumenthal, Thomas;
Brent, Michael R;
Chen, Nansheng;
Chinwalla, Asif;
Clarke, Laura;
Clee, Chris;
Coghlan, Avril;
Coulson, Alan;
D'Eustachio, Peter;
Fitch, David H. A;
Fulton, Lucinda A;
Fulton, Robert E;
Griffiths-Jones, Sam;
Harris, Todd W;
Hillier, LaDeana W;
Kamath, Ravi;
Kuwabara, Patricia E

Publication type:

Article

The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics.

Published in:

PLoS Biology, 2003, v. 1, n. 2, p. 166, doi. 10.1371/journal.pbio.0000045

By:

Stein, Lincoln D.;
Bao, Zhirong;
Blasiar, Darin;
Blumenthal, Thomas;
Brent, Michael R.;
Nansheng Chen, Michael R.;
Chinwalla, Asif;
Clarke, Laura;
Clee, Chris;
Coghlan, Avril;
Coulson, Alan;
D'Eustachio, Peter;
Fitch, David H. A.;
Fulton, Lucinda A.;
Fulton, Robert E.;
Griffiths-Jones, Sam;
Harris, Todd W.;
Hillier, LaDeana W.;
Kamath, Ravi;
Kuwabara, Patricia E.

Publication type:

Article

Characterization of proteins that interact with the cell-cycle regulatory protein Ran/TC4.

Published in:

Nature, 1993, v. 366, n. 6455, p. 585, doi. 10.1038/366585a0

By:

Coutavas, Elias;
Ren, Mindong;
Oppenheim, Joel D.;
D'Eustachio, Peter;
Rush, Mark G.

Publication type:

Article

Perspectives on tracking data reuse across biodata resources.

Published in:

Bioinformatics Advances, 2024, v. 4, n. 1, p. 1, doi. 10.1093/bioadv/vbae057

By:

Ross, Karen E;
Bastian, Frederic B;
Buys, Matt;
Cook, Charles E;
D'Eustachio, Peter;
Harrison, Melissa;
Hermjakob, Henning;
Li, Donghui;
Lord, Phillip;
Natale, Darren A;
Peters, Bjoern;
Sternberg, Paul W;
Su, Andrew I;
Thakur, Matthew;
Thomas, Paul D;
Bateman, Alex;
Consortium, and the UniProt

Publication type:

Article

Cellular functions of TC10, a Rho family GTPase: regulation of morphology, signal transduction and cell growth.

Published in:

Oncogene, 1999, v. 18, n. 26, p. 3831, doi. 10.1038/sj.onc.1202758

By:

Murphy, Gretchen A;
Solski, Patricia A;
Jillian, Stephanie A;
de la Ossa, Pablo Pérez;
D'Eustachio, Peter;
Der, Channing J;
Rush, Mark G

Publication type:

Article

Annotating Cancer Variants and Anti-Cancer Therapeutics in Reactome.

Published in:

Cancers, 2012, v. 4, n. 4, p. 1180, doi. 10.3390/cancers4041180

By:

Milacic, Marija;
Haw, Robin;
Rothfels, Karen;
Wu, Guanming;
Croft, David;
Hermjakob, Henning;
D'Eustachio, Peter;
Stein, Lincoln

Publication type:

Article

Reactome and ORCID—fine-grained credit attribution for community curation.

Published in:

Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz123

By:

Viteri, Guilherme;
Matthews, Lisa;
Varusai, Thawfeek;
Gillespie, Marc;
Milacic, Marija;
Cook, Justin;
Weiser, Joel;
Shorser, Solomon;
Sidiropoulos, Konstantinos;
Fabregat, Antonio;
Haw, Robin;
Wu, Guanming;
Stein, Lincoln;
D'Eustachio, Peter;
Hermjakob, Henning

Publication type:

Article

Modeling biochemical pathways in the gene ontology.

Published in:

Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw126

By:

Hill, David P.;
D'Eustachio, Peter;
Berardini, Tanya Z.;
Mungall, Christopher J.;
Renedo, Nikolai;
Blake, Judith A.

Publication type:

Article

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference.

Published in:

2012

By:

Gaudet, Pascale;
Arighi, Cecilia;
Bastian, Frederic;
Bateman, Alex;
Blake, Judith A.;
Cherry, Michael J.;
D’Eustachio, Peter;
Finn, Robert;
Giglio, Michelle;
Hirschman, Lynette;
Kania, Renate;
Klimke, William;
Martin, Maria Jesus;
Karsch-Mizrachi, Ilene;
Munoz-Torres, Monica;
Natale, Darren;
O’Donovan, Claire;
Ouellette, Francis;
Pruitt, Kim D.;
Robinson-Rechavi, Marc

Publication type:

Proceeding

Critical amino acid residues in proteins: a BioMart integration of Reactome protein annotations with PRIDE mass spectrometry data and COSMIC somatic mutations.

Published in:

Database: The Journal of Biological Databases & Curation, 2011, v. 2011, p. 1, doi. 10.1093/database/bar047

By:

Ndegwa, Nelson;
Cô té, Richard G.;
Ovelleiro, David;
D'Eustachio, Peter;
Hermjakob, Henning;
Vizcaíno, Juan A.;
Croft, David

Publication type:

Article

The Reactome BioMart.

Published in:

Database: The Journal of Biological Databases & Curation, 2011, v. 2011, p. 1, doi. 10.1093/database/bar031

By:

Haw, Robin A.;
Croft, David;
Yung, Christina K.;
Ndegwa, Nelson;
D'Eustachio, Peter;
Hermjakob, Henning;
Stein, Lincoln D.

Publication type:

Article

The systematic annotation of the three main GPCR families in Reactome.

Published in:

Database: The Journal of Biological Databases & Curation, 2010, v. 2010, p. 1, doi. 10.1093/database/baq018

By:

Jassal, Bijay;
Jupe, Steven;
Caudy, Michael;
Birney, Ewan;
Stein, Lincoln;
Hermjakob, Henning;
D’Eustachio, Peter

Publication type:

Article

Evidence that two phenotypically distinct mouse PKD mutations, <em>bpk</em> and <em>jcpk</em>, are allelic.

Published in:

Kidney International, 1996, v. 50, n. 4, p. 1158, doi. 10.1038/ki.1996.423

By:

Guay-Woodford, Lisa M.;
Bryda, Elizabeth C.;
Christine, Brian;
Lindsey, J. Russell;
Collier, William R.;
Avner, Ellis D.;
D'Eustachio, Peter;
Flaherty, Lorraine

Publication type:

Article

Reactome pathway analysis: a high-performance in-memory approach.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1559-2

By:

Fabregat, Antonio;
Sidiropoulos, Konstantinos;
Viteri, Guilherme;
Forner, Oscar;
Marin-Garcia, Pablo;
Arnau, Vicente;
D'Eustachio, Peter;
Stein, Lincoln;
Hermjakob, Henning

Publication type:

Article

Reactome pathway analysis to enrich biological discovery in proteomics data sets.

Published in:

Proteomics, 2011, v. 11, n. 18, p. 3598, doi. 10.1002/pmic.201100066

By:

Haw, Robin;
Hermjakob, Henning;
D'Eustachio, Peter;
Stein, Lincoln

Publication type:

Article

Human and chicken TLR pathways: manual curation and computer-based orthology analysis.

Published in:

Mammalian Genome, 2011, v. 22, n. 1/2, p. 130, doi. 10.1007/s00335-010-9296-0

By:

Gillespie, Marc;
Shamovsky, Veronica;
D'Eustachio, Peter

Publication type:

Article

Plant Reactome Knowledgebase: empowering plant pathway exploration and OMICS data analysis.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1538, doi. 10.1093/nar/gkad1052

By:

Gupta, Parul;
Elser, Justin;
Hooks, Elizabeth;
D'Eustachio, Peter;
Jaiswal, Pankaj;
Naithani, Sushma

Publication type:

Article

Plant Reactome: a knowledgebase and resource for comparative pathway analysis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. D1, p. D1093, doi. 10.1093/nar/gkz996

By:

Naithani, Sushma;
Gupta, Parul;
Preece, Justin;
D'Eustachio, Peter;
Elser, Justin L;
Garg, Priyanka;
Dikeman, Daemon A;
Kiff, Jason;
Cook, Justin;
Olson, Andrew;
Wei, Sharon;
Tello-Ruiz, Marcela K;
Mundo, Antonio Fabregat;
Munoz-Pomer, Alfonso;
Mohammed, Suhaib;
Cheng, Tiejun;
Bolton, Evan;
Papatheodorou, Irene;
Stein, Lincoln;
Ware, Doreen

Publication type:

Article

A Linkage Map of Mouse Chromosome 12: Localization of Igh and Effects of Sex and Interference on Recombination.

Published in:

Genetics, 1988, v. 120, n. 4, p. 1073

By:

Blank, Robert D.;
Campbell, Gerald R.;
Calabro, Anthony;
D'Eustachio, Peter

Publication type:

Article

An Interaction Between Genetic Factors and Gender Determines the Magnitude of the Inflammatory Response in the Mouse Air Pouch Model of Acute Inflammation.

Published in:

Inflammation, 2005, v. 29, n. 1, p. 1, doi. 10.1007/s10753-006-8962-6

By:

David Delano;
M. Montesinos;
Peter D'Eustachio;
Tim Wiltshire;
Bruce Cronstein

Publication type:

Article

Dispersion of α-like globin genes of the mouse to three different chromosomes.

Published in:

Nature, 1981, v. 293, n. 5829, p. 196, doi. 10.1038/293196a0

By:

Leder, Aya;
Swan, David;
Ruddle, Frank;
D'Eustachio, Peter;
Leder, Philip

Publication type:

Article

Reactome and the Gene Ontology: digital convergence of data resources.

Published in:

Bioinformatics, 2021, v. 37, n. 19, p. 3343, doi. 10.1093/bioinformatics/btab325

By:

Good, Benjamin M;
Auken, Kimberly Van;
Hill, David P;
Mi, Huaiyu;
Carbon, Seth;
Balhoff, James P;
Albou, Laurent-Philippe;
Thomas, Paul D;
Mungall, Christopher J;
Blake, Judith A;
D'Eustachio, Peter

Publication type:

Article

Reactome diagram viewer: data structures and strategies to boost performance.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1208, doi. 10.1093/bioinformatics/btx752

By:

Fabregat, Antonio;
Sidiropoulos, Konstantinos;
Viteri, Guilherme;
Marin-Garcia, Pablo;
Ping, Peipei;
Stein, Lincoln;
D'Eustachio, Peter;
Hermjakob, Henning

Publication type:

Article

An integrated genetic and physical map of the 650-kb region containing the congenital polycystic kidney (cpk) locus on mouse Chromosome 12.

Published in:

Cytogenetics & Cell Genetics, 2001, v. 94, n. 1/2, p. 55, doi. 10.1159/000048783

By:

Mrug, M.;
Green, W. J.;
DasGupta, S.;
Beier, D. R.;
Lu, W.;
D'Eustachio, Peter;
Guay-Woodford, L. M.

Publication type:

Article

Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.

Published in:

Nucleic Acids Research, 2017, v. 45, n. D1, p. D339, doi. 10.1093/nar/gkw1075

By:

Natale, Darren A.;
Arighi, Cecilia N.;
Blake, Judith A.;
Bona, Jonathan;
Chuming Chen;
Sheng-Chih Chen;
Christie, Karen R.;
Cowart, Julie;
D’Eustachio, Peter;
Diehl, Alexander D.;
Drabkin, Harold J.;
Duncan, William D.;
Huang, Hongzhan;
Ren, Jia;
Ross, Karen;
Ruttenberg, Alan;
Shamovsky, Veronica;
Smith, Barry;
Qinghua Wang;
Jian Zhang

Publication type:

Article

Plant Reactome: a resource for plant pathways and comparative analysis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. D1, p. D1029, doi. 10.1093/nar/gkw932

By:

Naithani, Sushma;
Preece, Justin;
D'Eustachio, Peter;
Gupta, Parul;
Amarasinghe, Vindhya;
Dharmawardhana, Palitha D.;
Guanming Wu;
Fabregat, Antonio;
Elser, Justin L.;
Weiser, Joel;
Keays, Maria;
Fuentes, Alfonso Munoz-Pomer;
Petryszak, Robert;
Stein, Lincoln D.;
Ware, Doreen;
Jaiswal, Pankaj

Publication type:

Article

Gramene 2013: comparative plant genomics resources.

Published in:

Nucleic Acids Research, 2014, v. 42, n. D1, p. D1193, doi. 10.1093/nar/gkt1110

By:

Monaco, Marcela K.;
Stein, Joshua;
Naithani, Sushma;
Wei, Sharon;
Dharmawardhana, Palitha;
Kumari, Sunita;
Amarasinghe, Vindhya;
Youens-Clark, Ken;
Thomason, James;
Preece, Justin;
Pasternak, Shiran;
Olson, Andrew;
Jiao, Yinping;
Lu, Zhenyuan;
Bolser, Dan;
Kerhornou, Arnaud;
Staines, Dan;
Walts, Brandon;
Wu, Guanming;
D’Eustachio, Peter

Publication type:

Article

Protein Ontology: a controlled structured network of protein entities.

Published in:

Nucleic Acids Research, 2014, v. 42, n. D1, p. D415, doi. 10.1093/nar/gkt1173

By:

Natale, Darren A.;
Arighi, Cecilia N.;
Blake, Judith A.;
Bult, Carol J.;
Christie, Karen R.;
Cowart, Julie;
D’Eustachio, Peter;
Diehl, Alexander D.;
Drabkin, Harold J.;
Helfer, Olivia;
Huang, Hongzhan;
Masci, Anna Maria;
Ren, Jia;
Roberts, Natalia V.;
Ross, Karen;
Ruttenberg, Alan;
Shamovsky, Veronica;
Smith, Barry;
Yerramalla, Meher Shruti;
Zhang, Jian

Publication type:

Article

The Protein Ontology: a structured representation of protein forms and complexes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D539, doi. 10.1093/nar/gkq907

By:

Natale, Darren A.;
Arighi, Cecilia N.;
Barker, Winona C.;
Blake, Judith A.;
Bult, Carol J.;
Caudy, Michael;
Drabkin, Harold J.;
D’Eustachio, Peter;
Evsikov, Alexei V.;
Huang, Hongzhan;
Nchoutmboube, Jules;
Roberts, Natalia V.;
Smith, Barry;
Zhang, Jian;
Wu, Cathy H.

Publication type:

Article

Reactome knowledgebase of human biological pathways and processes.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D619, doi. 10.1093/nar/gkn863

By:

Matthews, Lisa;
Gopinath, Gopal;
Gillespie, Marc;
Caudy, Michael;
Croft, David;
de Bono, Bernard;
Garapati, Phani;
Hemish, Jill;
Hermjakob, Henning;
Jassal, Bijay;
Kanapin, Alex;
Lewis, Suzanna;
Mahajan, Shahana;
May, Bruce;
Schmidt, Esther;
Vastrik, Imre;
Wu, Guanming;
Birney, Ewan;
Stein, Lincoln;
D’Eustachio, Peter

Publication type:

Article

Corrigendum: The BioPAX community standard for pathway data sharing.

Published in:

2012

By:

Demir, Emek;
Cary, Michael P;
Paley, Suzanne;
Fukuda, Ken;
Lemer, Christian;
Vastrik, Imre;
Wu, Guanming;
D'Eustachio, Peter;
Schaefer, Carl;
Luciano, Joanne;
Schacherer, Frank;
Martinez-Flores, Irma;
Hu, Zhenjun;
Jimenez-Jacinto, Veronica;
Joshi-Tope, Geeta;
Kandasamy, Kumaran;
Lopez-Fuentes, Alejandra C;
Mi, Huaiyu;
Pichler, Elgar;
Rodchenkov, Igor

Publication type:

Erratum