Works matching AU Culhane, Aedín C.

Results: 21

GeneSigDB--a curated database of gene expression signatures.

Published in:

Nucleic Acids Research, 2010, v. 38, p. D716, doi. 10.1093/nar/gkp1015

By:

Culhane, Aedín C.;
Schwarzl, Thomas;
Sultana, Razvan;
Picard, Kermshlise C.;
Picard, Shaita C.;
Lu, Tim H.;
Franklin, Katherine R.;
French, Simon J.;
Papenhausen, Gerald;
Correll, Mick;
Quackenbush, John

Publication type:

Article

Expression Profiler: next generation—an online platform for analysis of microarray data.

Published in:

Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w465, doi. 10.1093/nar/gkh470

By:

Kapushesky, Misha;
Kemmeren, Patrick;
Culhane, Aedín C.;
Durinck, Steffen;
Ihmels, Jan;
Körner, Christine;
Kull, Meelis;
Torrente, Aurora;
Sarkans, Ugis;
Vilo, Jaak;
Brazma, Alvis

Publication type:

Article

Dimension reduction techniques for the integrative analysis of multi-omics data.

Published in:

Briefings in Bioinformatics, 2016, v. 17, n. 4, p. 628, doi. 10.1093/bib/bbv108

By:

Chen Meng;
Zeleznik, Oana A.;
Thallinger, Gerhard G.;
Kuster, Bernhard;
Gholami, Amin M.;
Culhane, Aedín C.

Publication type:

Article

Public data and open source tools for multi-assay genomic investigation of disease.

Published in:

Briefings in Bioinformatics, 2016, v. 17, n. 4, p. 603, doi. 10.1093/bib/bbv080

By:

Kannan, Lavanya;
Ramos, Marcel;
Re, Angela;
El-Hachem, Nehme;
Safikhani, Zhaleh;
Gendoo, Deena M. A.;
Davis, Sean;
Gomez-Cabrero, David;
Castelo, Robert;
Hansen, Kasper D.;
Carey, Vincent J.;
Morgan, Martin;
Culhane, Aedín C.;
Haibe-Kains, Benjamin;
Waldron, Levi

Publication type:

Article

CENP-F expression is associated with poor prognosis and chromosomal instability in patients with primary breast cancer.

Published in:

International Journal of Cancer, 2007, v. 120, n. 7, p. 1434, doi. 10.1002/ijc.22413

By:

O'Brien, Sallyann L.;
Fagan, Ailís;
Fox, Edward J.P.;
Millikan, Robert C.;
Culhane, Aedín C.;
Brennan, Donal J.;
McCann, Amanda H.;
Hegarty, Shauna;
Moyna, Siobhan;
Duffy, Michael J.;
Higgins, Desmond G.;
Jirström, Karin;
Landberg, Göran;
Gallagher, William M.

Publication type:

Article

Repeatability of published microarray gene expression analyses.

Published in:

Nature Genetics, 2009, v. 41, n. 2, p. 149, doi. 10.1038/ng.295

By:

Ioannidis, John P. A.;
Allison, David B.;
Ball, Catherine A.;
Coulibaly, Issa;
Xiangqin Cui;
Culhane, Aedín C.;
Falchi, Mario;
Furlanello, Cesare;
Game, Laurence;
Jurman, Giuseppe;
Mangion, Jon;
Mehta, Tapan;
Nitzberg, Michael;
Page, Grier P.;
Petretto, Enrico;
van Noort, Vera

Publication type:

Article

RamiGO: an R/Bioconductor package providing an AmiGO Visualize interface.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 666, doi. 10.1093/bioinformatics/bts708

By:

Schröder, Markus S.;
Gusenleitner, Daniel;
Quackenbush, John;
Culhane, Aedín C.;
Haibe-Kains, Benjamin

Publication type:

Article

iBBiG: iterative binary bi-clustering of gene sets.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2484, doi. 10.1093/bioinformatics/bts438

By:

Gusenleitner, Daniel;
Howe, Eleanor A.;
Bentink, Stefan;
Quackenbush, John;
Culhane, Aedín C.

Publication type:

Article

survcomp: an R/Bioconductor package for performance assessment and comparison of survival models.

Published in:

2011

By:

Schröder, Markus S.;
Culhane, Aedín C.;
Quackenbush, John;
Haibe-Kains, Benjamin

Publication type:

Case Study

Integrating transcription factor binding site information with gene expression datasets.

Published in:

Bioinformatics, 2007, v. 23, n. 3, p. 298, doi. 10.1093/bioinformatics/btl597

By:

Ian B. Jeffery;
Stephen F. Madden;
Paul A. McGettigan;
Guy Perrière;
Aedín C. Culhane;
Desmond G. Higgins

Publication type:

Article

MADE4: an R package for multivariate analysis of gene expression data.

Published in:

Bioinformatics, 2005, v. 21, n. 11, p. 2789, doi. 10.1093/bioinformatics/bti394

By:

Aedín C. Culhane;
Jean Thioulouse;
Guy Perrière;
Desmond G. Higgins

Publication type:

Article

Between-group analysis of microarray data.

Published in:

Bioinformatics, 2002, v. 18, n. 12, p. 1600, doi. 10.1093/bioinformatics/18.12.1600

By:

Culhane, Aedín C.;
Perrière, Guy;
Considine, Elizabeth C.;
Cotter, Thomas G.;
Higgins, Desmond G.

Publication type:

Article

A multivariate approach to the integration of multi-omics datasets.

Published in:

BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-162

By:

Meng, Chen;
Kuster, Bernhard;
Culhane, Aedín C.;
Gholami, Amin Moghaddas

Publication type:

Article

A multivariate analysis approach to the integration of proteomic and gene expression data.

Published in:

Proteomics, 2007, v. 7, n. 13, p. 2162, doi. 10.1002/pmic.200600898

By:

Fagan, Ailís;
Culhane, Aedín C.;
Higgins, Desmond G.

Publication type:

Article

GeneSigDB: a manually curated database and resource for analysis of gene expression signatures.

Published in:

Nucleic Acids Research, 2012, p. D1060, doi. 10.1093/nar/gkr901

By:

Culhane, Aedín C.;
Schröder, Markus S.;
Sultana, Razvan;
Picard, Shaita C.;
Martinelli, Enzo N.;
Kelly, Caroline;
Haibe-Kains, Benjamin;
Kapushesky, Misha;
St Pierre, Anne-Alyssa;
Flahive, William;
Picard, Kermshlise C.;
Gusenleitner, Daniel;
Papenhausen, Gerald;
O'Connor, Niall;
Correll, Mick;
Quackenbush, John

Publication type:

Article

The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons.

Published in:

Nucleic Acids Research, 2012, p. D984, doi. 10.1093/nar/gkr1051

By:

Ho Sui, Shannan J.;
Begley, Kimberly;
Reilly, Dorothy;
Chapman, Brad;
McGovern, Ray;
Rocca-Sera, Philippe;
Maguire, Eamonn;
Altschuler, Gabriel M.;
Hansen, Terah A. A.;
Sompallae, Ramakrishna;
Krivtsov, Andrei;
Shivdasani, Ramesh A.;
Armstrong, Scott A.;
Culhane, Aedín C.;
Correll, Mick;
Sansone, Susanna-Assunta;
Hofmann, Oliver;
Hide, Winston

Publication type:

Article

Stem Cell-Like Gene Expression in Ovarian Cancer Predicts Type II Subtype and Prognosis.

Published in:

PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0057799

By:

Schwede, Matthew;
Spentzos, Dimitrios;
Bentink, Stefan;
Hofmann, Oliver;
Haibe-Kains, Benjamin;
Harrington, David;
Quackenbush, John;
Culhane, Aedín C.

Publication type:

Article

In Situ Identification of CD44+/CD24- Cancer Cells in Primary Human Breast Carcinomas.

Published in:

PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0043110

By:

Perrone, Giuseppe;
Gaeta, Laura Maria;
Zagami, Mariagiovanna;
Nasorri, Francesca;
Coppola, Roberto;
Borzomati, Domenico;
Bartolozzi, Francesco;
Altomare, Vittorio;
Trodella, Lucio;
Tonini, Giuseppe;
Santini, Daniele;
Cavani, Andrea;
Muda, Andrea Onetti;
Culhane, Aedín C.

Publication type:

Article

In Reply.

Published in:

Oncologist, 2017, v. 22, n. 12, p. 1561, doi. 10.1634/theoncologist.2017-0283

By:

de Velasco, Guillermo;
Culhane, Aedín C.;
Heng, Daniel Y.C.;
Signoretti, Sabina;
Choueiri, Toni K.

Publication type:

Article

Molecular Subtypes Improve Prognostic Value of International Metastatic Renal Cell Carcinoma Database Consortium Prognostic Model.

Published in:

Oncologist, 2017, v. 22, n. 3, p. 286, doi. 10.1634/theoncologist.2016-0078

By:

de Velasco, Guillermo;
Culhane, Aedín C.;
Fay, André P.;
Hakimi, A. Ari;
Voss, Martin H.;
Tannir, Nizar M.;
Tamboli, Pheroze;
Appleman, Leonard J.;
Bellmunt, Joaquim;
Kimryn Rathmell, W.;
Albiges, Laurence;
Hsieh, James J.;
Heng, Daniel Y. C.;
Signoretti, Sabina;
Choueiri, Toni K.

Publication type:

Article

Cross-platform comparison and visualisation of gene expression data using co-inertia analysis.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 59

By:

Culhane, Aedín C.;
Perrière, Guy;
Higgins, Desmond G.

Publication type:

Article