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Improving the representativeness of UK's national COVID-19 Infection Survey through spatio-temporal regression and post-stratification.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49201-4
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- Article
Improving the representativeness of UK's national COVID-19 Infection Survey through spatio-temporal regression and post-stratification.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49201-4
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- Article
Author Correction: The plasmidome associated with Gram-negative bloodstream infections: a large-scale observational study using complete plasmid assemblies.
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- 2024
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- Correction Notice
Prediction of pyrazinamide resistance in Mycobacterium tuberculosis using structure-based machine-learning approaches.
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- JAC-Antimicrobial Resistance, 2024, v. 6, n. 2, p. 1, doi. 10.1093/jacamr/dlae037
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- Article
The plasmidome associated with Gram-negative bloodstream infections: A large-scale observational study using complete plasmid assemblies.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-45761-7
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- Article
Quantitative measurement of antibiotic resistance in Mycobacterium tuberculosis reveals genetic determinants of resistance and susceptibility in a target gene approach.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-023-44325-5
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- Article
Hostile: accurate decontamination of microbial host sequences.
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- Bioinformatics, 2023, v. 39, n. 12, p. 1, doi. 10.1093/bioinformatics/btad728
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Deep learning and single-cell phenotyping for rapid antimicrobial susceptibility detection in Escherichia coli.
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- Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-05524-4
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- Article
Protection against SARS-CoV-2 Omicron BA.4/5 variant following booster vaccination or breakthrough infection in the UK.
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- Nature Communications, 2023, n. 1, p. 1, doi. 10.1038/s41467-023-38275-1
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- Article
A longitudinal study reveals persistence of antimicrobial resistance on livestock farms is not due to antimicrobial usage alone.
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- Frontiers in Microbiology, 2023, v. 14, p. 1, doi. 10.3389/fmicb.2023.1070340
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- Article
Omicron-Associated Changes in Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Symptoms in the United Kingdom.
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- Clinical Infectious Diseases, 2023, v. 76, n. 3, p. e133, doi. 10.1093/cid/ciac613
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- Article
Mortality risks associated with empirical antibiotic activity in Escherichia coli bacteraemia: an analysis of electronic health records.
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- 2022
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- journal article
Modern Solutions for Ancient Pathogens: Direct Pathogen Sequencing for Diagnosis of Lepromatous Leprosy and Cerebral Coenurosis.
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- Open Forum Infectious Diseases, 2022, v. 9, n. 9, p. 1, doi. 10.1093/ofid/ofac428
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- Article
High fluoroquinolone resistance proportions among multidrug-resistant tuberculosis driven by dominant L2 Mycobacterium tuberculosis clones in the Mumbai Metropolitan Region.
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- Genome Medicine, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13073-022-01076-0
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- Article
Genome-wide association studies of global Mycobacterium tuberculosis resistance to 13 antimicrobials in 10,228 genomes identify new resistance mechanisms.
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- PLoS Biology, 2022, v. 20, n. 8, p. 1, doi. 10.1371/journal.pbio.3001755
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A data compendium associating the genomes of 12,289 Mycobacterium tuberculosis isolates with quantitative resistance phenotypes to 13 antibiotics.
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- PLoS Biology, 2022, v. 20, n. 8, p. 1, doi. 10.1371/journal.pbio.3001721
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- Article
A crowd of BashTheBug volunteers reproducibly and accurately measure the minimum inhibitory concentrations of 13 antitubercular drugs from photographs of 96-well broth microdilution plates.
- Published in:
- eLife, 2022, p. 1, doi. 10.7554/eLife.75046
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- Article
Symptoms and Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Positivity in the General Population in the United Kingdom.
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- Clinical Infectious Diseases, 2022, v. 75, n. 1, p. e329, doi. 10.1093/cid/ciab945
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- Article
SARS-CoV-2 antibody trajectories after a single COVID-19 vaccination with and without prior infection.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31495-x
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- Article
A crowd of BashTheBug volunteers reproducibly and accurately measure the minimum inhibitory concentrations of 13 antitubercular drugs from photographs of 96-well broth microdilution plates.
- Published in:
- eLife, 2022, p. 1
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- Publication type:
- Article
Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infectivity by Viral Load, S Gene Variants and Demographic Factors, and the Utility of Lateral Flow Devices to Prevent Transmission.
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- Clinical Infectious Diseases, 2022, v. 74, n. 3, p. 407, doi. 10.1093/cid/ciab421
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- Article
Ten Years of Population-Level Genomic Escherichia coli and Klebsiella pneumoniae Serotype Surveillance Informs Vaccine Development for Invasive Infections.
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- Clinical Infectious Diseases, 2021, v. 73, n. 12, p. 2276, doi. 10.1093/cid/ciab006
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- Article
Antimicrobial resistance in commensal opportunistic pathogens isolated from non-sterile sites can be an effective proxy for surveillance in bloodstream infections.
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- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-02755-5
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- Article
end-to-end heterogeneous graph attention network for Mycobacterium tuberculosis drug-resistance prediction.
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- Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab299
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- Article
Anti-spike antibody response to natural SARS-CoV-2 infection in the general population.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26479-2
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- Article
Viral detection and identification in 20 min by rapid single-particle fluorescence in-situ hybridization of viral RNA.
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- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-98972-z
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- Article
Ten-year longitudinal molecular epidemiology study of Escherichia coli and Klebsiella species bloodstream infections in Oxfordshire, UK.
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- Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00947-2
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- Article
Human and Porcine Transmission of Clostridioides difficile Ribotype 078, Europe.
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- 2021
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- journal article
The Duration, Dynamics, and Determinants of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Antibody Responses in Individual Healthcare Workers.
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- Clinical Infectious Diseases, 2021, v. 73, n. 3, p. e699, doi. 10.1093/cid/ciab004
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- Article
Nanopore metagenomic sequencing of influenza virus directly from respiratory samples: diagnosis, drug resistance and nosocomial transmission, United Kingdom, 2018/19 influenza season.
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- Eurosurveillance (15607917), 2021, v. 26, n. 27, p. 18, doi. 10.2807/1560-7917.ES.2021.26.27.2000004
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Preferences for Medical Consultations from Online Providers: Evidence from a Discrete Choice Experiment in the United Kingdom.
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- Applied Health Economics & Health Policy, 2021, v. 19, n. 4, p. 521, doi. 10.1007/s40258-021-00642-8
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- Article
A haemagglutination test for rapid detection of antibodies to SARS-CoV-2.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22045-y
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- Article
Stringent thresholds in SARS-CoV-2 IgG assays lead to under-detection of mild infections.
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- 2021
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- journal article
The importance of using whole genome sequencing and extended spectrum beta-lactamase selective media when monitoring antimicrobial resistance.
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- Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-76877-7
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- Article
Awareness of Appropriate Antibiotic Use in Primary Care for Influenza-Like Illness: Evidence of Improvement from UK Population-Based Surveys.
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- Antibiotics (2079-6382), 2020, v. 9, n. 10, p. 690, doi. 10.3390/antibiotics9100690
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- Article
NanoSPC: a scalable, portable, cloud compatible viral nanopore metagenomic data processing pipeline.
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- Nucleic Acids Research, 2020, v. 48, n. W1, p. W366, doi. 10.1093/nar/gkaa413
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- Article
Relationship between microbiology of throat swab and clinical course among primary care patients with acute cough: a prospective cohort study.
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- 2020
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- journal article
Reducing expectations for antibiotics in primary care: a randomised experiment to test the response to fear-based messages about antimicrobial resistance.
- Published in:
- 2020
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- journal article
Multi-Label Random Forest Model for Tuberculosis Drug Resistance Classification and Mutation Ranking.
- Published in:
- Frontiers in Microbiology, 2020, v. 11, p. 1, doi. 10.3389/fmicb.2020.00667
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- Article
Investigation of the impact of the NICE guidelines regarding antibiotic prophylaxis during invasive dental procedures on the incidence of infective endocarditis in England: an electronic health records study.
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- 2020
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- journal article
Author Correction: Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase.
- Published in:
- 2020
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- Correction Notice
Selective culture enrichment and sequencing of feces to enhance detection of antimicrobial resistance genes in third-generation cephalosporin resistant Enterobacteriaceae.
- Published in:
- PLoS ONE, 2019, v. 14, n. 11, p. 1, doi. 10.1371/journal.pone.0222831
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- Article
The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples.
- Published in:
- Environmental Microbiome, 2019, v. 14, n. 1, p. N.PAG, doi. 10.1186/s40793-019-0347-1
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- Article
505. Making of a "Super-Duper Bug": Plasmid-Mediated Resistance Accumulation in a Carbapenemase-Producing Klebsiella quasipneumoniae from Patients and the Environment.
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- Open Forum Infectious Diseases, 2019, v. 6, p. S245, doi. 10.1093/ofid/ofz360.574
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- Article
DeepAMR for predicting co-occurrent resistance of Mycobacterium tuberculosis.
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- Bioinformatics, 2019, v. 35, n. 18, p. 3240, doi. 10.1093/bioinformatics/btz067
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- Article
'Caveat emptor': the cautionary tale of endocarditis and the potential pitfalls of clinical coding data-an electronic health records study.
- Published in:
- 2019
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- journal article
Using hospital network-based surveillance for antimicrobial resistance as a more robust alternative to self-reporting.
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- PLoS ONE, 2019, v. 14, n. 7, p. 1, doi. 10.1371/journal.pone.0219994
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- Article
Antibiotic Review Kit for Hospitals (ARK-Hospital): study protocol for a stepped-wedge cluster-randomised controlled trial.
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- 2019
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- journal article
Application of machine learning techniques to tuberculosis drug resistance analysis.
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- Bioinformatics, 2019, v. 35, n. 13, p. 2276, doi. 10.1093/bioinformatics/bty949
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- Article
WGS to determine the extent of Clostridioides difficile transmission in a high incidence setting in North Wales in 2015.
- Published in:
- 2019
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- Publication type:
- journal article