Works by Crollius, Hugues Roest

Results: 32

CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 11, p. 1124, doi. 10.1038/nsmb.2420

By:

Saulière, Jérôme;
Murigneux, Valentine;
Wang, Zhen;
Marquenet, Emélie;
Barbosa, Isabelle;
Le Tonquèze, Olivier;
Audic, Yann;
Paillard, Luc;
Crollius, Hugues Roest;
Le Hir, Hervé

Publication type:

Article

Genomicus: a database and a browser to study gene synteny in modern and ancestral genomes.

Published in:

Bioinformatics, 2010, v. 26, n. 8, p. 1119, doi. 10.1093/bioinformatics/btq079

By:

Muffato, Matthieu;
Louis, Alexandra;
Poisnel, Charles-Edouard;
Crollius, Hugues Roest

Publication type:

Article

Estimate of human gene number provided by genome-wide analysis using Tetraodon nigroviridis DNA sequence.

Published in:

Nature Genetics, 2000, v. 25, n. 2, p. 235, doi. 10.1038/76118

By:

Roest Crollius, Hugues;
Jaillon, Olivier;
Bernot, Alain;
Dasilva, Corinne;
Bouneau, Laurence;
Fischer, Cécile;
Fizames, Cécile;
Wincker, Patrick;
Brottier, Philippe;
Quétier, Francis;
Saurin, William;
Weissenbach, Jean

Publication type:

Article

Comparative genomic analysis reveals independent expansion of a lineage-specific gene family in vertebrates: The class II cytokine receptors and their ligands in mammals and fish.

Published in:

BMC Genomics, 2003, v. 4, p. 29, doi. 10.1186/1471-2164-4-29

By:

Lutfalla, Georges;
Crollius, Hugues Roest;
Stange-thomann, Nicole;
Jaillon, Olivier;
Mogensen, Knud;
Monneron, Danièle

Publication type:

Article

Conserved Small Nucleotidic Elements at the Origin of Concerted piRNA Biogenesis from Genes and lncRNAs.

Published in:

Cells (2073-4409), 2020, v. 9, n. 6, p. 1491, doi. 10.3390/cells9061491

By:

Jensen, Silke;
Brasset, Emilie;
Parey, Elise;
Roest Crollius, Hugues;
Sharakhov, Igor V.;
Vaury, Chantal

Publication type:

Article

Paleogenomics in vertebrates, or the recovery of lost genomes from the mist of time.

Published in:

BioEssays, 2008, v. 30, n. 2, p. 122, doi. 10.1002/bies.20707

By:

Muffato, Matthieu;
Crollius, Hugues Roest

Publication type:

Article

GenomicusPlants: A Web Resource to Study Genome Evolution in Flowering Plants.

Published in:

Plant & Cell Physiology, 2015, v. 56, n. 1, p. e4, doi. 10.1093/pcp/pcu177

By:

Louis, Alexandra;
Murat, Florent;
Salse, Jérôme;
Roest Crollius, Hugues

Publication type:

Article

Early born neurons are abnormally positioned in the doublecortin knockout hippocampus.

Published in:

Human Molecular Genetics, 2017, v. 26, n. 1, p. 90, doi. 10.1093/hmg/ddw370

By:

Khalaf-Nazzal, Reham;
Stouffer, Melissa A.;
Olaso, Robert;
Muresan, Leila;
Roumegous, Audrey;
Lavilla, Virginie;
Carpentier, Wassila;
Moutkine, Imane;
Dumont, Sylvie;
Albaud, Benoit;
Cagnard, Nicolas;
Crollius, Hugues Roest;
Francis, Fiona

Publication type:

Article

Master regulators in primary skin fibroblast fate reprogramming in a human ex vivo model of chronic wounds.

Published in:

Wound Repair & Regeneration, 2016, v. 24, n. 2, p. 247, doi. 10.1111/wrr.12392

By:

Noizet, Maïté;
Lagoutte, Emilie;
Gratigny, Marlène;
Bouschbacher, Marielle;
Lazareth, Isabelle;
Roest Crollius, Hugues;
Darzacq, Xavier;
Dugast ‐ Darzacq, Claire

Publication type:

Article

High precision detection of conserved segments from synteny blocks.

Published in:

PLoS ONE, 2017, v. 12, n. 7, p. 1, doi. 10.1371/journal.pone.0180198

By:

Lucas, Joseph MEX;
Roest Crollius, Hugues

Publication type:

Article

FUSTA: leveraging FUSE for manipulation of multiFASTA files at scale.

Published in:

Bioinformatics Advances, 2022, v. 2, n. 1, p. 1, doi. 10.1093/bioadv/vbac091

By:

Delehelle, Franklin;
Crollius, Hugues Roest

Publication type:

Article

Classification of non-coding variants with high pathogenic impact.

Published in:

PLoS Genetics, 2022, v. 18, n. 4, p. 1, doi. 10.1371/journal.pgen.1010191

By:

Moyon, Lambert;
Berthelot, Camille;
Louis, Alexandra;
Nguyen, Nga Thi Thuy;
Roest Crollius, Hugues

Publication type:

Article

Chromosome evolution at the origin of the ancestral vertebrate genome.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1559-1

By:

Sacerdot, Christine;
Louis, Alexandra;
Bon, Céline;
Berthelot, Camille;
Roest Crollius, Hugues

Publication type:

Article

Genomicus in 2022: comparative tools for thousands of genomes and reconstructed ancestors.

Published in:

Nucleic Acids Research, 2022, v. 50, n. D1, p. D1025, doi. 10.1093/nar/gkab1091

By:

Nguyen, Nga Thi Thuy;
Vincens, Pierre;
Dufayard, Jean François;
Roest Crollius, Hugues;
Louis, Alexandra

Publication type:

Article

ANISEED 2019: 4D exploration of genetic data for an extended range of tunicates.

Published in:

Nucleic Acids Research, 2020, v. 48, n. D1, p. D668, doi. 10.1093/nar/gkz955

By:

Dardaillon, Justine;
Dauga, Delphine;
Simion, Paul;
Faure, Emmanuel;
Onuma, Takeshi A;
DeBiasse, Melissa B;
Louis, Alexandra;
Nitta, Kazuhiro R;
Naville, Magali;
Besnardeau, Lydia;
Reeves, Wendy;
Wang, Kai;
Fagotto, Marie;
Guéroult-Bellone, Marion;
Fujiwara, Shigeki;
Dumollard, Rémi;
Veeman, Michael;
Volff, Jean-Nicolas;
Roest Crollius, Hugues;
Douzery, Emmanuel

Publication type:

Article

Genomicus 2018: karyotype evolutionary trees and on-the-fly synteny computing.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D816, doi. 10.1093/nar/gkx1003

By:

Nguyen, Nga Thi Thuy;
Vincens, Pierre;
Roest Crollius, Hugues;
Louis, Alexandra

Publication type:

Article

On the importance of evolutionary constraint for regulatory sequence identification.

Published in:

Briefings in Functional Genomics, 2021, v. 20, n. 6, p. 361, doi. 10.1093/bfgp/elab015

By:

Giudicelli, François;
Crollius, Hugues Roest

Publication type:

Article

How much does the amphioxus genome represent the ancestor of chordates?

Published in:

Briefings in Functional Genomics, 2012, v. 11, n. 2, p. 89, doi. 10.1093/bfgp/els003

By:

Louis, Alexandra;
Roest Crollius, Hugues;
Robinson-Rechavi, Marc

Publication type:

Article

Gene Loss and Evolutionary Rates Following Whole-Genome Duplication in Teleost Fishes.

Published in:

Molecular Biology & Evolution, 2006, v. 23, n. 9, p. 1808, doi. 10.1093/molbev/msl049

By:

Brunet, Frédéric G.;
Crollius, Hugues Roest;
Paris, Mathilde;
Aury, Jean-Marc;
Gibert, Patricia;
Jaillon, Olivier;
Laudet, Vincent;
Robinson-Rechavi, Marc

Publication type:

Article

Detecting single DNA copy number variations in complex genomes using one nanogram of starting DNA and BAC-array CGH.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. e112, doi. 10.1093/nar/gnh108

By:

Guillaud-Bataille, Marine;
Valent, Alexander;
Soularue, Pascal;
Perot, Christine;
Inda, Maria-del-Mar;
Receveur, Aline;
Smaïli, Sadek;
Crollius, Hugues Roest;
Bénard, Jean;
Bernheim, Alain;
Gidrol, Xavier;
Danglot, Gisèle

Publication type:

Article

IXDB, an X chromosome integrated database (update).

Published in:

Nucleic Acids Research, 1999, v. 27, n. 1, p. 123, doi. 10.1093/nar/27.1.123

By:

Leser, Ulf;
Roest Crollius, Hugues;
Lehrach, Hans;
Sudbrak, Ralf

Publication type:

Article

IXDB, an X chromosome integrated database.

Published in:

Nucleic Acids Research, 1998, v. 26, n. 1, p. 108, doi. 10.1093/nar/26.1.108

By:

Leser, Ulf;
Wagner, Robert;
Grigoriev, Andrei;
Lehrach, Hans;
Roest Crollius, Hugues

Publication type:

Article

PhylDiag: identifying complex synteny blocks that include tandem duplications using phylogenetic gene trees.

Published in:

BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-268

By:

Lucas, Joseph M. E. X.;
Muffato, Matthieu;
Roest Crollius, Hugues

Publication type:

Article

Comparative epigenomics in the Brassicaceae reveals two evolutionarily conserved modes of PRC2-mediated gene regulation.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1333-9

By:

Chica, Claudia;
Louis, Alexandra;
Crollius, Hugues Roest;
Colot, Vincent;
Roudier, François

Publication type:

Article

Understanding Brassicaceae evolution through ancestral genome reconstruction.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0814-y

By:

Murat, Florent;
Louis, Alexandra;
Maumus, Florian;
Armero, Alix;
Cooke, Richard;
Quesneville, Hadi;
Crollius, Hugues Roest;
Salse, Jerome

Publication type:

Article

Evolution is not Uniform Along Coding Sequences.

Published in:

Molecular Biology & Evolution, 2023, v. 40, n. 3, p. 1, doi. 10.1093/molbev/msad042

By:

Bricout, Raphaël;
Weil, Dominique;
Stroebel, David;
Genovesio, Auguste;
Crollius, Hugues Roest

Publication type:

Article

The Loss of Adipokine Genes in the Chicken Genome and Implications for Insulin Metabolism.

Published in:

Molecular Biology & Evolution, 2014, v. 31, n. 10, p. 2637

By:

Đaković, Nataša;
Térézol, Morgane;
Pitel, Frédérique;
Maillard, Virginie;
Elis, Sébastien;
Leroux, Sophie;
Lagarrigue, Sandrine;
Gondret, Florence;
Klopp, Christophe;
Baeza, Elisabeth;
Duclos, Michel J.;
Roest Crollius, Hugues;
Monget, Philippe

Publication type:

Article

Inventing a Sex-Specific Gene: A Conserved Role of DMRT1 in Teleost Fishes Plus a Recent Duplication in the Medaka Oryzias latipes Resulted in DMY.

Published in:

Journal of Molecular Evolution, 2003, v. 57, p. S148, doi. 10.1007/s00239-003-0021-4

By:

Lutfalla, Georges;
Crollius, Hugues Roest;
Brunet, Frédéric G.;
Laudet, Vincent;
Robinson-Rechavi, Marc

Publication type:

Article

Genomicus update 2015: KaryoView and MatrixView provide a genome-wide perspective to multispecies comparative genomics.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D682, doi. 10.1093/nar/gku1112

By:

Louis, Alexandra;
Nguyen, Nga Thi Thuy;
Muffato, Matthieu;
Roest Crollius, Hugues

Publication type:

Article

Genomicus: five genome browsers for comparative genomics in eukaryota.

Published in:

Nucleic Acids Research, 2013, v. 41, p. D700, doi. 10.1093/nar/gks1156

By:

Louis, Alexandra;
Muffato, Matthieu;
Crollius, Hugues Roest

Publication type:

Article

Preventing Dangerous Nonsense: Selection for Robustness to Transcriptional Error in Human Genes.

Published in:

PLoS Genetics, 2011, v. 7, n. 10, p. 1, doi. 10.1371/journal.pgen.1002276

By:

Cusack, Brian P.;
Arndt, Peter F.;
Duret, Laurent;
Crollius, Hugues Roest

Publication type:

Article

Human and Non-Human Primate Genomes Share Hotspots of Positive Selection.

Published in:

PLoS Genetics, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pgen.1000840

By:

Enard, David;
Depaulis, Frantz;
Crollius, Hugues Roest

Publication type:

Article