Works by Croll, Daniel

Results: 91

Revisiting the Evolution and Function of NIP2 Paralogues in the Rhynchosporium Spp. Complex.

Published in:

Plant Pathology, 2025, v. 74, n. 6, p. 1622, doi. 10.1111/ppa.14111

By:

Darma, Reynaldi;
Yu, Daniel S.;
Outram, Megan A.;
Ovenden, Ben;
Sung, Yi‐Chang;
Hill, Erin H.;
Croll, Daniel;
Williams, Simon J.;
Zhang, Xuechen;
Milgate, Andrew;
Solomon, Peter S.;
McDonald, Megan C.

Publication type:

Article

An independant haplotype responsible for white berry phenotype in Vitis vinifera arose from a large deletion at the berry color locus.

Published in:

Julius-Kühn-Archiv, 2022, n. 470, p. 75

By:

Reynard, Jean-Sébastien;
Brodard, Justine;
Roquis, David;
Schumpp, Olivier;
Marchal, Cécile;
Croll, Daniel;
Lacombe, Thierry;
Spring, Jean-Laurent

Publication type:

Article

Chromosome-level genome assembly for the Aldabra giant tortoise enables insights into the genetic health of a threatened population.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac090

By:

Çilingir, F Gözde;
A'Bear, Luke;
Hansen, Dennis;
Davis, Leyla R;
Bunbury, Nancy;
Ozgul, Arpat;
Croll, Daniel;
Grossen, Christine

Publication type:

Article

Copy number variation introduced by a massive mobile element facilitates global thermal adaptation in a fungal wheat pathogen.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49913-7

By:

Tralamazza, Sabina Moser;
Gluck-Thaler, Emile;
Feurtey, Alice;
Croll, Daniel

Publication type:

Article

A highly multiplexed assay to monitor pathogenicity, fungicide resistance and gene flow in the fungal wheat pathogen Zymoseptoria tritici.

Published in:

PLoS ONE, 2023, v. 18, n. 2, p. 1, doi. 10.1371/journal.pone.0281181

By:

Bellah, Hadjer;
Gazeau, Gwilherm;
Gélisse, Sandrine;
Amezrou, Reda;
Marcel, Thierry C.;
Croll, Daniel

Publication type:

Article

Screening of grapevine red blotch virus in two European ampelographic collections.

Published in:

Journal of Plant Pathology, 2022, v. 104, n. 1, p. 9, doi. 10.1007/s42161-021-00952-9

By:

Reynard, Jean-Sébastien;
Brodard, Justine;
Dubuis, Nathalie;
Kellenberger, Isabelle;
Spilmont, Anne-Sophie;
Roquis, David;
Maliogka, Varvara;
Marchal, Cécile;
Dedet, Sandrine;
Gning, Ophélie;
Croll, Daniel;
Gindro, Katia;
Schumpp, Olivier;
Spring, Jean-Laurent;
Lacombe, Thierry

Publication type:

Article

Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat.

Published in:

BMC Biology, 2018, v. 16, n. 1, p. 1, doi. 10.1186/s12915-018-0543-2

By:

Krishnan, Parvathy;
Meile, Lukas;
Plissonneau, Clémence;
Ma, Xin;
Hartmann, Fanny E.;
Croll, Daniel;
McDonald, Bruce A.;
Sánchez-Vallet, Andrea

Publication type:

Article

Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome.

Published in:

BMC Biology, 2018, v. 16, p. 1, doi. 10.1186/s12915-017-0457-4

By:

Plissonneau, Clémence;
Hartmann, Fanny E.;
Croll, Daniel

Publication type:

Article

Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae.

Published in:

BMC Biology, 2016, v. 14, p. 1, doi. 10.1186/s12915-016-0309-7

By:

Tofazzal Islam, M.;
Croll, Daniel;
Gladieux, Pierre;
Soanes, Darren M.;
Persoons, Antoine;
Bhattacharjee, Pallab;
Shaid Hossain, Md.;
Rani Gupta, Dipali;
Mahbubur Rahman, Md.;
Golam Mahboob, M.;
Cook, Nicola;
Salam, Moin U.;
Zahan Surovy, Musrat;
Bueno Sancho, Vanessa;
Leodato Nunes Maciel, João;
NhaniJúnior, Antonio;
Castroagudín, Vanina Lilián;
de Assis Reges, Juliana T.;
Ceresini, Paulo Cezar;
Ravel, Sebastien

Publication type:

Article

Variability in an effector gene promoter of a necrotrophic fungal pathogen dictates epistasis and effector-triggered susceptibility in wheat.

Published in:

PLoS Pathogens, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.ppat.1010149

By:

John, Evan;
Jacques, Silke;
Phan, Huyen T. T.;
Liu, Lifang;
Pereira, Danilo;
Croll, Daniel;
Singh, Karam B.;
Oliver, Richard P.;
Tan, Kar-Chun

Publication type:

Article

A fungal avirulence factor encoded in a highly plastic genomic region triggers partial resistance to septoria tritici blotch.

Published in:

New Phytologist, 2018, v. 219, n. 3, p. 1048, doi. 10.1111/nph.15180

By:

Meile, Lukas;
Croll, Daniel;
Brunner, Patrick C.;
Plissonneau, Clémence;
Hartmann, Fanny E.;
McDonald, Bruce A.;
Sánchez‐Vallet, Andrea

Publication type:

Article

A small secreted protein in Zymoseptoria tritici is responsible for avirulence on wheat cultivars carrying the Stb6 resistance gene.

Published in:

New Phytologist, 2017, v. 214, n. 2, p. 619, doi. 10.1111/nph.14434

By:

Zhong, Ziming;
Marcel, Thierry C.;
Hartmann, Fanny E.;
Ma, Xin;
Plissonneau, Clémence;
Zala, Marcello;
Ducasse, Aurélie;
Confais, Johann;
Compain, Jérôme;
Lapalu, Nicolas;
Amselem, Joëlle;
McDonald, Bruce A.;
Croll, Daniel;
Palma‐Guerrero, Javier

Publication type:

Article

What the population genetic structures of host and pathogen tell us about disease evolution.

Published in:

New Phytologist, 2016, v. 212, n. 3, p. 537, doi. 10.1111/nph.14203

By:

Croll, Daniel;
Laine, Anna‐Liisa

Publication type:

Article

Machine-learning predicts genomic determinants of meiosis-driven structural variation in a eukaryotic pathogen.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23862-x

By:

Badet, Thomas;
Fouché, Simone;
Hartmann, Fanny E.;
Zala, Marcello;
Croll, Daniel

Publication type:

Article

A systematic screen for co-option of transposable elements across the fungal kingdom.

Published in:

Mobile DNA, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s13100-024-00312-1

By:

Oggenfuss, Ursula;
Badet, Thomas;
Croll, Daniel

Publication type:

Article

Secretome profiling of Cryptococcus neoformans reveals regulation of a subset of virulence-associated proteins and potential biomarkers by protein kinase A.

Published in:

BMC Microbiology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12866-015-0532-3

By:

Geddes, Jennifer M. H.;
Croll, Daniel;
Caza, Mélissa;
Stoynov, Nikolay;
Foster, Leonard J.;
Kronstad, James W.

Publication type:

Article

Introgression from Domestic Goat Generated Variation at the Major Histocompatibility Complex of Alpine Ibex.

Published in:

PLoS Genetics, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pgen.1004438

By:

Grossen, Christine;
Keller, Lukas;
Biebach, Iris;
Croll, Daniel

Publication type:

Article

Breakage-fusion-bridge Cycles and Large Insertions Contribute to the Rapid Evolution of Accessory Chromosomes in a Fungal Pathogen.

Published in:

PLoS Genetics, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pgen.1003567

By:

Croll, Daniel;
Zala, Marcello;
McDonald, Bruce A.

Publication type:

Article

Cryptic genetic structure and copy‐number variation in the ubiquitous forest symbiotic fungus Cenococcum geophilum.

Published in:

Environmental Microbiology, 2021, v. 23, n. 11, p. 6536, doi. 10.1111/1462-2920.15752

By:

Dauphin, Benjamin;
de Freitas Pereira, Maíra;
Kohler, Annegret;
Grigoriev, Igor V.;
Barry, Kerrie;
Na, Hyunsoo;
Amirebrahimi, Mojgan;
Lipzen, Anna;
Martin, Francis;
Peter, Martina;
Croll, Daniel

Publication type:

Article

The emergence of the multi‐species NIP1 effector in Rhynchosporium was accompanied by high rates of gene duplications and losses.

Published in:

Environmental Microbiology, 2019, v. 21, n. 8, p. 2677, doi. 10.1111/1462-2920.14583

By:

Mohd‐Assaad, Norfarhan;
McDonald, Bruce A.;
Croll, Daniel

Publication type:

Article

Analysis of the nasal vestibule mycobiome in patients with allergic rhinitis.

Published in:

Mycoses, 2015, v. 58, n. 3, p. 167, doi. 10.1111/myc.12296

By:

Jung, Won Hee;
Croll, Daniel;
Cho, Jae Hoon;
Kim, Yu Ri;
Lee, Yang Won

Publication type:

Article

Two‐speed genomes of Epichloe fungal pathogens show contrasting signatures of selection between species and across populations.

Published in:

Molecular Ecology, 2024, v. 33, n. 4, p. 1, doi. 10.1111/mec.17242

By:

Treindl, Artemis D.;
Stapley, Jessica;
Croll, Daniel;
Leuchtmann, Adrian

Publication type:

Article

The population genetics of adaptation through copy number variation in a fungal plant pathogen.

Published in:

Molecular Ecology, 2023, v. 32, n. 10, p. 2443, doi. 10.1111/mec.16435

By:

Stalder, Luzia;
Oggenfuss, Ursula;
Mohd‐Assaad, Norfarhan;
Croll, Daniel

Publication type:

Article

Temporal changes in pathogen diversity in a perennial plant–pathogen–hyperparasite system.

Published in:

Molecular Ecology, 2022, v. 31, n. 7, p. 2073, doi. 10.1111/mec.16386

By:

Stauber, Lea;
Croll, Daniel;
Prospero, Simone

Publication type:

Article

The complex genomic basis of rapid convergent adaptation to pesticides across continents in a fungal plant pathogen.

Published in:

Molecular Ecology, 2021, v. 30, n. 21, p. 5390, doi. 10.1111/mec.15737

By:

Hartmann, Fanny E.;
Vonlanthen, Tiziana;
Singh, Nikhil Kumar;
McDonald, Megan C.;
Milgate, Andrew;
Croll, Daniel

Publication type:

Article

A Chromosome-Scale Genome Assembly for the Fusarium oxysporum Strain Fo5176 To Establish a Model Arabidopsis-Fungal Pathosystem.

Published in:

G3: Genes | Genomes | Genetics, 2020, v. 10, n. 10, p. 3549, doi. 10.1534/g3.120.401375

By:

Fokkens, Like;
Li Guo;
Dora, Susanne;
Bo Wang;
Kai Ye;
Sánchez-Rodríguez, Clara;
Croll, Daniel

Publication type:

Article

The Genetic Architecture of Emerging Fungicide Resistance in Populations of a Global Wheat Pathogen.

Published in:

Genome Biology & Evolution, 2020, v. 12, n. 12, p. 2231, doi. 10.1093/gbe/evaa203

By:

Pereira, Danilo;
McDonald, Bruce A;
Croll, Daniel

Publication type:

Article

Complex Evolutionary Origins of Specialized Metabolite Gene Cluster Diversity among the Plant Pathogenic Fungi of the Fusarium graminearum Species Complex.

Published in:

Genome Biology & Evolution, 2019, v. 11, n. 11, p. 3106, doi. 10.1093/gbe/evz225

By:

Tralamazza, Sabina Moser;
Rocha, Liliana Oliveira;
Oggenfuss, Ursula;
Corrêa, Benedito;
Croll, Daniel

Publication type:

Article

Meiosis Leads to Pervasive Copy-Number Variation and Distorted Inheritance of Accessory Chromosomes of the Wheat Pathogen Zymoseptoria tritici.

Published in:

Genome Biology & Evolution, 2018, v. 10, n. 6, p. 1416, doi. 10.1093/gbe/evy100

By:

Fouché, Simone;
Plissonneau, Clémence;
McDonald, Bruce A.;
Croll, Daniel

Publication type:

Article

Genome-Wide Detection of Genes Under Positive Selection in Worldwide Populations of the Barley Scald Pathogen.

Published in:

Genome Biology & Evolution, 2018, v. 10, n. 5, p. 1315, doi. 10.1093/gbe/evy087

By:

Mohd-Assaad, Norfarhan;
McDonald, Bruce A;
Croll, Daniel

Publication type:

Article

Intron Gains and Losses in the Evolution of Fusarium and Cryptococcus Fungi.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 11, p. 1148, doi. 10.1093/gbe/evs091

By:

Croll, Daniel;
McDonald, Bruce A.

Publication type:

Article

Intron Gains and Losses in the Evolution of Fusarium and Cryptococcus Fungi.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 9, p. 1148, doi. 10.1093/gbe/evs091

By:

Croll, Daniel;
McDonald, Bruce A.

Publication type:

Article

Emergence and diversification of a highly invasive chestnut pathogen lineage across southeastern Europe.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.56279

By:

Stauber, Lea;
Badet, Thomas;
Feurtey, Alice;
Prospero, Simone;
Croll, Daniel

Publication type:

Article

Genome-wide association mapping reveals genes underlying population-level metabolome diversity in a fungal crop pathogen.

Published in:

BMC Biology, 2022, v. 20, n. 1, p. 1, doi. 10.1186/s12915-022-01422-z

By:

Singh, Nikhil Kumar;
Tralamazza, Sabina Moser;
Abraham, Leen Nanchira;
Glauser, Gaétan;
Croll, Daniel

Publication type:

Article

An Inversion Polymorphism Under Balancing Selection, Involving Giant Mobile Elements, in an Invasive Fungal Pathogen.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 2, p. 1, doi. 10.1093/molbev/msaf026

By:

Hartmann, Fanny E;
Vega, Ricardo C Rodríguez de la;
Demené, Arthur;
Badet, Thomas;
Vernadet, Jean-Philippe;
Rougemont, Quentin;
Labat, Amandine;
Snirc, Alodie;
Stauber, Lea;
Croll, Daniel;
Prospero, Simone;
Dutech, Cyril;
Giraud, Tatiana

Publication type:

Article

Genomic Signatures of Domestication in a Fungus Obligately Farmed by Leafcutter Ants.

Published in:

Molecular Biology & Evolution, 2024, v. 41, n. 10, p. 1, doi. 10.1093/molbev/msae197

By:

Leal-Dutra, Caio A;
Vizueta, Joel;
Baril, Tobias;
Kooij, Pepijn W;
Rødsgaard-Jørgensen, Asta;
Conlon, Benjamin H;
Croll, Daniel;
Shik, Jonathan Z

Publication type:

Article

Histone H3K27 Methylation Perturbs Transcriptional Robustness and Underpins Dispensability of Highly Conserved Genes in Fungi.

Published in:

Molecular Biology & Evolution, 2022, v. 39, n. 1, p. 1, doi. 10.1093/molbev/msab323

By:

Tralamazza, Sabina Moser;
Abraham, Leen Nanchira;
Reyes-Avila, Claudia Sarai;
Corrêa, Benedito;
Croll, Daniel

Publication type:

Article

Stress-Driven Transposable Element De-repression Dynamics and Virulence Evolution in a Fungal Pathogen.

Published in:

Molecular Biology & Evolution, 2020, v. 37, n. 1, p. 221, doi. 10.1093/molbev/msz216

By:

Fouché, Simone;
Badet, Thomas;
Oggenfuss, Ursula;
Plissonneau, Clémence;
Francisco, Carolina Sardinha;
Croll, Daniel

Publication type:

Article

Distinct Trajectories of Massive Recent Gene Gains and Losses in Populations of a Microbial Eukaryotic Pathogen.

Published in:

Molecular Biology & Evolution, 2017, v. 34, n. 11, p. 2808, doi. 10.1093/molbev/msx208

By:

Hartmann, Fanny E.;
Croll, Daniel

Publication type:

Article

Hitchhiking Selection Is Driving Intron Gain in a Pathogenic Fungus.

Published in:

Molecular Biology & Evolution, 2014, v. 31, n. 7, p. 1741, doi. 10.1093/molbev/msu123

By:

Brunner, Patrick C.;
Torriani, Stefano F.F.;
Croll, Daniel;
Stukenbrock, Eva H.;
McDonald, Bruce A.

Publication type:

Article

Coevolution and Life Cycle Specialization of Plant Cell Wall Degrading Enzymes in a Hemibiotrophic Pathogen.

Published in:

Molecular Biology & Evolution, 2013, v. 30, n. 6, p. 1337, doi. 10.1093/molbev/mst041

By:

Brunner, Patrick C.;
Torriani, Stefano F.F.;
Croll, Daniel;
Stukenbrock, Eva H.;
McDonald, Bruce A.

Publication type:

Article

Population genetic structure of Mycosphaerella graminicola and Quinone Outside Inhibitor (QoI) resistance in the Czech Republic.

Published in:

European Journal of Plant Pathology, 2013, v. 135, n. 1, p. 211, doi. 10.1007/s10658-012-0080-8

By:

Drabešová, Jana;
Ryšánek, Pavel;
Brunner, Patrick;
McDonald, Bruce;
Croll, Daniel

Publication type:

Article

Significant genetic and phenotypic changes arising from clonal growth of a single spore of an arbuscular mycorrhizal fungus over multiple generations.

Published in:

New Phytologist, 2012, v. 196, n. 3, p. 853, doi. 10.1111/j.1469-8137.2012.04278.x

By:

Ehinger, Martine O.;
Croll, Daniel;
Koch, Alexander M.;
Sanders, Ian R.

Publication type:

Article

Nonself vegetative fusion and genetic exchange in the arbuscular mycorrhizal fungus Glomus intraradices.

Published in:

New Phytologist, 2009, v. 181, n. 4, p. 924, doi. 10.1111/j.1469-8137.2008.02726.x

By:

Croll, Daniel;
Giovannetti, Manuela;
Koch, Alexander M.;
Sbrana, Cristiana;
Ehinger, Martine;
Lammers, Peter J.;
Sanders, Ian R.

Publication type:

Article

Multilocus genotyping of arbuscular mycorrhizal fungi and marker suitability for population genetics.

Published in:

2008

By:

Croll, Daniel;
Corradi, Nicolas;
Gamper, Hannes A.;
Sanders, Ian R.

Publication type:

Letter

Unexpected vagaries of microsatellite loci in Glomus intraradices: length polymorphisms are rarely caused by variation in repeat number only.

Published in:

2008

By:

Croll, Daniel;
Corradi, Nicolas;
Gamper, Hannes A.;
Sanders, Ian R.

Publication type:

Letter

Quantitative pathogenicity and host adaptation in a fungal plant pathogen revealed by whole-genome sequencing.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-46191-1

By:

Amezrou, Reda;
Ducasse, Aurélie;
Compain, Jérôme;
Lapalu, Nicolas;
Pitarch, Anais;
Dupont, Laetitia;
Confais, Johann;
Goyeau, Henriette;
Kema, Gert H. J.;
Croll, Daniel;
Amselem, Joëlle;
Sanchez-Vallet, Andrea;
Marcel, Thierry C.

Publication type:

Article

Evolution in the absence of sex: Ideas revisited in the post-genomics age (retrospective on DOI.

Published in:

BioEssays, 2016, v. 38, n. 12, p. 1191, doi. 10.1002/bies.201600195

By:

Croll, Daniel

Publication type:

Article

Learn from the fungi: Adaptive evolution without sex in fungal pathogens (comment on DOI 10.1002/bies.201300155).

Published in:

BioEssays, 2014, v. 36, n. 4, p. 334, doi. 10.1002/bies.201400030

By:

Croll, Daniel

Publication type:

Article

Mapping the adaptive landscape of a major agricultural pathogen reveals evolutionary constraints across heterogeneous environments.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2021, v. 15, n. 5, p. 1402, doi. 10.1038/s41396-020-00859-w

By:

Dutta, Anik;
Hartmann, Fanny E.;
Francisco, Carolina Sardinha;
McDonald, Bruce A.;
Croll, Daniel

Publication type:

Article