Works matching AU Cox, Murray P.

Results: 85

Epichloë hybrida , sp. nov., an emerging model system for investigating fungal allopolyploidy.

Published in:

Mycologia, 2017, v. 109, n. 5, p. 715, doi. 10.1080/00275514.2017.1406174

By:

Campbell, Matthew A.;
Tapper, Brian A.;
Simpson, Wayne R.;
Johnson, Richard D.;
Mace, Wade;
Ram, Arvina;
Lukito, Yonathan;
Dupont, Pierre-Yves;
Johnson, Linda J.;
Scott, D. Barry;
Ganley, Austen R. D.;
Cox, Murray P.

Publication type:

Article

Correction to: Human Perceptions of Megafaunal Extinction Events Revealed by Linguistic Analysis of Indigenous Oral Traditions.

Published in:

2018

By:

Wehi, Priscilla M.;
Cox, Murray P.;
Roa, Tom;
Whaanga, Hēmi

Publication type:

Correction Notice

Human Perceptions of Megafaunal Extinction Events Revealed by Linguistic Analysis of Indigenous Oral Traditions.

Published in:

Human Ecology: An Interdisciplinary Journal, 2018, v. 46, n. 4, p. 461, doi. 10.1007/s10745-018-0004-0

By:

Wehi, Priscilla M.;
Cox, Murray P.;
Roa, Tom;
Whaanga, Hēmi

Publication type:

Article

Reduced Virulence of an Introduced Forest Pathogen over 50 Years.

Published in:

Microorganisms, 2019, v. 7, n. 10, p. 420, doi. 10.3390/microorganisms7100420

By:

Bradshaw, Rosie E.;
Ormond, Shannon;
Dupont, Pierre-Yves;
Chettri, Pranav;
Ozturk, I. Kutay;
McDougal, Rebecca L.;
Bulman, Lindsay S.;
Cox, Murray P.

Publication type:

Article

Cross‐kingdom transcriptomic trends in the evolution of hybrid gene expression.

Published in:

Journal of Evolutionary Biology, 2022, v. 35, n. 8, p. 1126, doi. 10.1111/jeb.14059

By:

Behling, Anna H.;
Winter, David J.;
Ganley, Austen R. D.;
Cox, Murray P.

Publication type:

Article

Positive selection in the genomes of two Papua New Guinean populations at distinct altitude levels.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-47735-1

By:

André, Mathilde;
Brucato, Nicolas;
Hudjasov, Georgi;
Pankratov, Vasili;
Yermakovich, Danat;
Montinaro, Francesco;
Kreevan, Rita;
Kariwiga, Jason;
Muke, John;
Boland, Anne;
Deleuze, Jean-François;
Meyer, Vincent;
Evans, Nicholas;
Cox, Murray P.;
Leavesley, Matthew;
Dannemann, Michael;
Org, Tõnis;
Metspalu, Mait;
Mondal, Mayukh;
Ricaut, François-Xavier

Publication type:

Article

Evidence of Austronesian Genetic Lineages in East Africa and South Arabia: Complex Dispersal from Madagascar and Southeast Asia.

Published in:

Genome Biology & Evolution, 2019, v. 11, n. 3, p. 748, doi. 10.1093/gbe/evz028

By:

Brucato, Nicolas;
Fernandes, Veronica;
Kusuma, Pradiptajati;
Černý, Viktor;
Mulligan, Connie J;
Soares, Pedro;
Rito, Teresa;
Besse, Céline;
Boland, Anne;
Deleuze, Jean-Francois;
Cox, Murray P;
Sudoyo, Herawati;
Stoneking, Mark;
Pereira, Luisa;
Ricaut, François-Xavier

Publication type:

Article

The importance and prevalence of allopolyploidy in Aotearoa New Zealand.

Published in:

2020

By:

Behling, Anna H.;
Shepherd, Lara D.;
Cox, Murray P.

Publication type:

Literature Review

Denisovan introgression has shaped the immune system of present-day Papuans.

Published in:

PLoS Genetics, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pgen.1010470

By:

Vespasiani, Davide M.;
Jacobs, Guy S.;
Cook, Laura E.;
Brucato, Nicolas;
Leavesley, Matthew;
Kinipi, Christopher;
Ricaut, François-Xavier;
Cox, Murray P.;
Gallego Romero, Irene

Publication type:

Article

Contrasting Linguistic and Genetic Origins of the Asian Source Populations of Malagasy.

Published in:

Scientific Reports, 2016, p. 26066, doi. 10.1038/srep26066

By:

Kusuma, Pradiptajati;
Brucato, Nicolas;
Cox, Murray P.;
Pierron, Denis;
Razafindrazaka, Harilanto;
Adelaar, Alexander;
Sudoyo, Herawati;
Letellier, Thierry;
Ricaut, François-Xavier

Publication type:

Article

Coalescent analyses support multiple mainland-to-island dispersals in the evolution of Malagasy Triaenops bats (Chiroptera: Hipposideridae).

Published in:

Journal of Biogeography, 2008, v. 35, n. 6, p. 995, doi. 10.1111/j.1365-2699.2008.01891.x

By:

Russell, Amy L.;
Goodman, Steven M.;
Cox, Murray P.

Publication type:

Article

Evolution of virulence in a novel family of transmissible mega‐plasmids.

Published in:

Environmental Microbiology, 2021, v. 23, n. 9, p. 5289, doi. 10.1111/1462-2920.15595

By:

Sitter, Thomas L.;
Vaughan, Amy L.;
Schoof, Marion;
Jackson, Simon A.;
Glare, Travis R.;
Cox, Murray P.;
Fineran, Peter C.;
Gardner, Paul P.;
Hurst, Mark R. H.

Publication type:

Article

Comparative genomics reveals a core gene toolbox for lifestyle transitions in Hypocreales fungi.

Published in:

Environmental Microbiology, 2021, v. 23, n. 6, p. 3251, doi. 10.1111/1462-2920.15554

By:

Wu, Baojun;
Cox, Murray P.

Publication type:

Article

Regulation of host‐infection ability in the grass‐symbiotic fungus Epichloë festucae by histone H3K9 and H3K36 methyltransferases.

Published in:

Environmental Microbiology, 2021, v. 23, n. 4, p. 2116, doi. 10.1111/1462-2920.15370

By:

Lukito, Yonathan;
Lee, Kate;
Noorifar, Nazanin;
Green, Kimberly A.;
Winter, David J.;
Ram, Arvina;
Hale, Tracy K.;
Chujo, Tetsuya;
Cox, Murray P.;
Johnson, Linda J.;
Scott, Barry

Publication type:

Article

Exploring molecular signaling in plant-fungal symbioses using high throughput RNA sequencing.

Published in:

Plant Signaling & Behavior, 2010, v. 5, n. 11, p. 1353, doi. 10.4161/psb.5.11.12950

By:

Cox, Murray P.;
Eaton, Carla J.;
Scott, D. Barry

Publication type:

Article

HyLiTE: accurate and flexible analysis of gene expression in hybrid and allopolyploid species.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-014-0433-8

By:

Duchemin, Wandrille;
Dupont, Pierre-Yves;
Campbell, Matthew A.;
Ganley, Austen R. D.;
Cox, Murray P.

Publication type:

Article

HyLiTE: accurate and flexible analysis of gene expression in hybrid and allopolyploid species.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 216, doi. 10.1186/s12859-014-0433-8

By:

Duchemin, Wandrille;
Dupont, Pierre-Yves;
Campbell, Matthew A.;
Ganley, Austen R. D.;
Cox, Murray P.

Publication type:

Article

SMARTPOP: inferring the impact of social dynamics on genetic diversity through high speed simulations.

Published in:

BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-175

By:

Guillot, Elsa G.;
Cox, Murray P.

Publication type:

Article

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 485, doi. 10.1186/1471-2105-11-485

By:

Cox, Murray P.;
Peterson, Daniel A.;
Biggs, Patrick J.

Publication type:

Article

Correction: The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry.

Published in:

2015

By:

de Wit, Pierre J. G. M.;
van der Burgt, Ate;
Ökmen, Bilal;
Stergiopoulos, Ioannis;
Abd-Elsalam, Kamel A.;
Aerts, Andrea L.;
Bahkali, Ali H.;
Beenen, Henriek G.;
Chettri, Pranav;
Cox, Murray P.;
Datema, Erwin;
de Vries, Ronald P.;
Dhillon, Braham;
Ganley, Austen R.;
Griffiths, Scott A.;
Guo, Yanan;
Hamelin, Richard C.;
Henrissat, Bernard;
Kabir, M. Shahjahan;
Jashni, Mansoor Karimi

Publication type:

Correction Notice

Contrasting Signatures of Population Growth for Mitochondrial DNA and Y Chromosomes among Human Populations in Africa.

Published in:

Molecular Biology & Evolution, 2008, v. 25, n. 3, p. 517, doi. 10.1093/molbev/msm279

By:

Pilkington, Maya Metni;
Wilder, Jason A.;
Mendez, Fernando L.;
Cox, Murray P.;
Woerner, August;
Angui, Thiep;
Kingan, Sarah;
Mobasher, Zahra;
Batini, Chiara;
Destro-Bisol, Giovanni;
Soodyall, Himla;
Strassmann, Beverly I.;
Hammer, Michael F.

Publication type:

Article

Recombination-filtered genomic datasets by information maximization.

Published in:

Bioinformatics, 2007, v. 23, n. 14, p. 1851, doi. 10.1093/bioinformatics/btm253

By:

August E. Woerner;
Murray P. Cox;
Michael F. Hammer

Publication type:

Article

Deep ancestry of collapsing networks of nomadic hunter-gatherers in Borneo.

Published in:

Evolutionary Human Sciences, 2022, v. 4, p. 1, doi. 10.1017/ehs.2022.3

By:

Lansing, J. Stephen;
Jacobs, Guy S.;
Downey, Sean S.;
Norquest, Peter K.;
Cox, Murray P.;
Kuhn, Steven L.;
Miller, John H.;
Malik, Safarina G.;
Sudoyo, Herawati;
Kusuma, Pradiptajati

Publication type:

Article

Climate Change Influenced Female Population Sizes through Time across the Indonesian Archipelago.

Published in:

Human Biology, 2013, v. 85, n. 1-3, p. 135, doi. 10.3378/027.085.0306

By:

GUILLOT, ELSA G.;
TUMONGGOR, MERYANNE K.;
LANSING, J. STEPHEN;
SUDOYO, HERAWATI;
COX, MURRAY P.

Publication type:

Article

Accuracy of Molecular Dating with the Rho Statistic: Deviations from Coalescent Expectations Under a Range of Demographic Models.

Published in:

Human Biology, 2009, v. 81, n. 5/6, p. 911, doi. 10.3378/027.081.0631

By:

COX, MURRAY P.

Publication type:

Article

Accuracy of Molecular Dating with the Rho Statistic: Deviations from Coalescent Expectations Under a Range of Demographic Models.

Published in:

Human Biology, 2008, v. 80, n. 4, p. 335, doi. 10.3378/1534-6617-80.4.335

By:

COX, MURRAY P.

Publication type:

Article

A Polynesian Motif on the Y Chromosome: Population Structure in Remote Oceania.

Published in:

Human Biology, 2007, v. 79, n. 5, p. 525, doi. 10.1353/hub.2008.0004

By:

Cox, Murray P.;
Redd, Alan J.;
Karafet, Tatiana M.;
Ponder, Christine A.;
Lansing, J. Stephen;
Sudoyo, Herawati;
Hammer, Michael F.

Publication type:

Article

Indonesian Mitochondrial DNA and Its Opposition to a Pleistocene Era Origin of Proto-Polynesians in Island Southeast Asia.

Published in:

Human Biology, 2005, v. 77, n. 2, p. 179, doi. 10.1353/hub.2005.0037

By:

Cox, Murray P.

Publication type:

Article

Fungal endophyte infection of ryegrass reprograms host metabolism and alters development.

Published in:

New Phytologist, 2015, v. 208, n. 4, p. 1227, doi. 10.1111/nph.13614

By:

Dupont, Pierre‐Yves;
Eaton, Carla J.;
Wargent, Jason J.;
Fechtner, Susanne;
Solomon, Peter;
Schmid, Jan;
Day, Robert C.;
Scott, Barry;
Cox, Murray P.

Publication type:

Article

Fragmentation of an aflatoxin-like gene cluster in a forest pathogen.

Published in:

New Phytologist, 2013, v. 198, n. 2, p. 525, doi. 10.1111/nph.12161

By:

Bradshaw, Rosie E.;
Slot, Jason C.;
Moore, Geromy G.;
Chettri, Pranav;
Wit, Pierre J. G. M.;
Ehrlich, Kenneth C.;
Ganley, Austen R. D.;
Olson, Malin A.;
Rokas, Antonis;
Carbone, Ignazio;
Cox, Murray P.

Publication type:

Article

The ratio of human X chromosome to autosome diversity is positively correlated with genetic distance from genes.

Published in:

Nature Genetics, 2010, v. 42, n. 10, p. 830, doi. 10.1038/ng.651

By:

Hammer, Michael F.;
Woerner, August E.;
Mendez, Fernando L.;
Watkins, Joseph C.;
Cox, Murray P.;
Wall, Jeffrey D.

Publication type:

Article

Repeat elements organise 3D genome structure and mediate transcription in the filamentous fungus Epichloë festucae.

Published in:

PLoS Genetics, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pgen.1007467

By:

Winter, David J.;
Ganley, Austen R. D.;
Young, Carolyn A.;
Liachko, Ivan;
Schardl, Christopher L.;
Dupont, Pierre-Yves;
Berry, Daniel;
Ram, Arvina;
Scott, Barry;
Cox, Murray P.

Publication type:

Article

Influence of management practice on the microbiota of a critically endangered species: a longitudinal study of kākāpō chick faeces and associated nest litter.

Published in:

Animal Microbiome, 2022, v. 4, n. 1, p. 1, doi. 10.1186/s42523-022-00204-w

By:

West, Annie G.;
Digby, Andrew;
Lear, Gavin;
Kākāpō Aspergillosis Research Consortium;
Armstrong, Doug;
Armstrong-James, Darius;
Bromley, Mike;
Buckley, Elizabeth;
Chatterton, James;
Cox, Murray P.;
Cramer, Robert A.;
Crane, Jodie;
Dearden, Peter K.;
Eason, Daryl;
Fisher, Matthew C.;
Gago, Sara;
Gartrell, Brett;
Gemmell, Neil J.;
Glare, Travis R.;
Guhlin, Joseph

Publication type:

Article

Testing for Archaic Hominin Admixture on the X Chromosome: Model Likelihoods for the Modern Human RRM2P4 Region From Summaries of Genealogical Topology Under the Structured Coalescent.

Published in:

Genetics, 2008, v. 178, n. 1, p. 427, doi. 10.1534/genetics.107.080432

By:

Cox, Murray P.;
Mendez, Fernando L.;
Karafet, Tatiana M.;
Pilkington, Maya Metni;
Kingan, Sarah B.;
Destro-Bisol, Giovanni;
Strassmann, Beverly I.;
Hammer, Michael E.

Publication type:

Article

Inferring Human Population Sizes, Divergence Times and Rates of Gene Flow From Mitochondrial, X and Y Chromosome Resequencing Data.

Published in:

Genetics, 2007, v. 177, n. 4, p. 2195, doi. 10.1534/genetics.107.077495

By:

Garrigan, Daniel;
Kingan, Sarah B.;
Pilkington, Maya M.;
Wilder, Jason A.;
Cox, Murray P.;
Soodyall, Himla;
Strassmann, Beverly;
Destro-Bisol, Giovanni;
de Knijff, Peter;
Novelletto, Andrea;
Friedlaender, Jonathan;
Hammer, Michael F.

Publication type:

Article

Genetics, adaptation to environmental changes and archaic admixture in the pathogenesis of diabetes mellitus in Indigenous Australians.

Published in:

Reviews in Endocrine & Metabolic Disorders, 2019, v. 20, n. 3, p. 321, doi. 10.1007/s11154-019-09505-z

By:

Brzozowska, Malgorzata Monika;
Havula, Essi;
Allen, Richard Benjamin;
Cox, Murray P.

Publication type:

Article

The secreted proteome of necrotrophic Ciborinia camelliae causes nonhost‐specific virulence.

Published in:

Plant Pathology, 2022, v. 71, n. 2, p. 437, doi. 10.1111/ppa.13477

By:

Kondratev, Nikolai;
Middleditch, Martin J.;
Denton‐Giles, Matthew;
Bradshaw, Rosie E.;
Cox, Murray P.;
Dijkwel, Paul P.

Publication type:

Article

An informatics consult approach for generating clinical evidence for treatment decisions.

Published in:

2021

By:

Lai, Alvina G.;
Chang, Wai Hoong;
Parisinos, Constantinos A.;
Katsoulis, Michail;
Blackburn, Ruth M.;
Shah, Anoop D.;
Nguyen, Vincent;
Denaxas, Spiros;
Davey Smith, George;
Gaunt, Tom R.;
Nirantharakumar, Krishnarajah;
Cox, Murray P.;
Forde, Donall;
Asselbergs, Folkert W.;
Harris, Steve;
Richardson, Sylvia;
Sofat, Reecha;
Dobson, Richard J. B.;
Hingorani, Aroon;
Patel, Riyaz

Publication type:

journal article

A new deep branch of eurasian mtDNA macrohaplogroup Mreveals additional complexity regarding the settlement ofMadagascar.

Published in:

BMC Genomics, 2009, v. 10, p. 605, doi. 10.1186/1471-2164-10-605

By:

Ricaut, François-X.;
Razafindrazaka, Harilanto;
Cox, Murray P.;
Dugoujon, Jean-M.;
Guitard, Evelyne;
Sambo, Clement;
Mormina, Maru;
Mirazon-Lahr, Marta;
Ludes, Bertrand;
Crubézy, Eric

Publication type:

Article

A question of scale: Human migrations writ large and small.

Published in:

BMC Biology, 2010, v. 8, p. 98, doi. 10.1186/1741-7007-8-98

By:

Cox, Murray P.;
Hammer, Michael F.

Publication type:

Article

Semi-automatic selection of summary statistics for ABC model choice.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2014, v. 13, n. 1, p. 67, doi. 10.1515/sagmb-2013-0012

By:

Prangle, Dennis;
Fearnhead, Paul;
Cox, Murray P.;
Biggs, Patrick J.;
French, Nigel P.

Publication type:

Article

Comparative genetic diversity of Cryptosporidium species causing human infections.

Published in:

Parasitology, 2020, v. 147, n. 13, p. 1532, doi. 10.1017/S0031182020001493

By:

Garcia-R, Juan C.;
Cox, Murray P.;
Hayman, David T. S.

Publication type:

Article

Isolation, contact and social behavior shaped genetic diversity in West Timor.

Published in:

Journal of Human Genetics, 2014, v. 59, n. 9, p. 494, doi. 10.1038/jhg.2014.62

By:

Tumonggor, Meryanne K;
Karafet, Tatiana M;
Downey, Sean;
Lansing, J Stephen;
Norquest, Peter;
Sudoyo, Herawati;
Hammer, Michael F;
Cox, Murray P

Publication type:

Article

The Indonesian archipelago: an ancient genetic highway linking Asia and the Pacific.

Published in:

Journal of Human Genetics, 2013, v. 58, n. 3, p. 165, doi. 10.1038/jhg.2012.154

By:

Tumonggor, Meryanne K;
Karafet, Tatiana M;
Hallmark, Brian;
Lansing, J Stephen;
Sudoyo, Herawati;
Hammer, Michael F;
Cox, Murray P

Publication type:

Article

Complete mitochondrial DNA sequences provide new insights into the Polynesian motif and the peopling of Madagascar.

Published in:

European Journal of Human Genetics, 2010, v. 18, n. 5, p. 575, doi. 10.1038/ejhg.2009.222

By:

Razafindrazaka, Harilanto;
Ricaut, François-X;
Cox, Murray P.;
Mormina, Maru;
Dugoujon, Jean-Michel;
Randriamarolaza, Louis P.;
Guitard, Evelyne;
Tonasso, Laure;
Ludes, Bertrand;
Crubézy, Eric

Publication type:

Article

Correction to: Archaic mitochondrial DNA inserts in modern day nuclear genomes.

Published in:

2020

By:

Bücking, Robert;
Cox, Murray P.;
Hudjashov, Georgi;
Saag, Lauri;
Sudoyo, Herawati;
Stoneking, Mark

Publication type:

Correction Notice

Archaic mitochondrial DNA inserts in modern day nuclear genomes.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6392-8

By:

Bücking, Robert;
Cox, Murray P;
Hudjashov, Georgi;
Saag, Lauri;
Sudoyo, Herawati;
Stoneking, Mark

Publication type:

Article

Population growth of Mexican free-tailed bats (Tadarida brasiliensis mexicana) predates human agricultural activity.

Published in:

BMC Evolutionary Biology, 2011, v. 11, n. 1, p. 88, doi. 10.1186/1471-2148-11-88

By:

Russell, Amy L.;
Cox, Murray P.;
Brown, Veronica A.;
McCracken, Gary F.

Publication type:

Article

An Alternative Self-Splicing Intron Lifecycle Revealed by Dynamic Intron Turnover in Epichloë Endophyte Mitochondrial Genomes.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 4, p. 1, doi. 10.1093/molbev/msaf076

By:

Chan, Jennie;
Truglio, Mauro;
Schardl, Christopher L;
Cox, Murray P;
Young, Carolyn A;
Ganley, Austen R D

Publication type:

Article

Episodes of Diversification and Isolation in Island Southeast Asian and Near Oceanian Male Lineages.

Published in:

Molecular Biology & Evolution, 2022, v. 39, n. 3, p. 1, doi. 10.1093/molbev/msac045

By:

Karmin, Monika;
Flores, Rodrigo;
Saag, Lauri;
Hudjashov, Georgi;
Brucato, Nicolas;
Crenna-Darusallam, Chelzie;
Larena, Maximilian;
Endicott, Phillip L;
Jakobsson, Mattias;
Lansing, J Stephen;
Sudoyo, Herawati;
Leavesley, Matthew;
Metspalu, Mait;
Ricaut, François-Xavier;
Cox, Murray P

Publication type:

Article