Works by Cox, Michael M.

Results: 78

Correction: Preserving Genome Integrity: The DdrA Protein of Deinococcus radiodurans R1.

Published in:

2006

By:

Harris, Dennis R.;
Tanaka, Masashi;
Saveliev, Sergei V.;
Jolivet, Edmond;
Earl, Ashlee M.;
Cox, Michael M.;
Battista, John R.

Publication type:

Correction Notice

Organized Unidirectional Waves of ATP Hydrolysis within a RecA Filament.

Published in:

PLoS Biology, 2005, v. 3, n. 2, p. 1, doi. 10.1371/journal.pbio.0030052

By:

Cox, Julia M;
Tsodikov, Oleg V;
Cox, Michael M

Publication type:

Article

Organized Unidirectional Waves of ATP Hydrolysis within a RecA Filament.

Published in:

PLoS Biology, 2005, v. 3, n. 2, p. 1, doi. 10.1371/journal.pbio.0030052

By:

Cox, Julia M.;
Tsodikov, Oleg V.;
Cox, Michael M.

Publication type:

Article

Preserving Genome Integrity: The DdrA Protein of Deinococcus radiodurans R1.

Published in:

PLoS Biology, 2004, v. 2, n. 10, p. 1629, doi. 10.1371/journal.pbio.0020304

By:

Harris, Dennis R.;
Tanaka, Masashi;
Saveliev, Sergei V.;
Jolivet, Edmond;
Earl, Ashlee M.;
Cox, Michael M.;
Battista, John R.

Publication type:

Article

Preserving Genome Integrity: The DdrA Protein of Deinococcus radiodurans R1.

Published in:

PLoS Biology, 2004, v. 2, n. 9, p. 1, doi. 10.1371/journal.pbio.0020304

By:

Harris, Dennis R;
Tanaka, Masashi;
Saveliev, Sergei V;
Jolivet, Edmond;
Earl, Ashlee M;
Cox, Michael M;
Battista, John R

Publication type:

Article

Problems and Paradigms: Relating biochemistry to biology: How the recombinational repair function of RecA protein is manifested in its molecular properties.

Published in:

BioEssays, 1993, v. 15, n. 9, p. 617, doi. 10.1002/bies.950150908

By:

Cox, Michael M.

Publication type:

Article

X-ray crystal structure of the Escherichia coli RadD DNA repair protein bound to ADP reveals a novel zinc ribbon domain.

Published in:

PLoS ONE, 2022, v. 17, n. 4, p. 1, doi. 10.1371/journal.pone.0266031

By:

Osorio Garcia, Miguel A.;
Satyshur, Kenneth A.;
Cox, Michael M.;
Keck, James L.

Publication type:

Article

The Escherichia coli serS gene promoter region overlaps with the rarA gene.

Published in:

PLoS ONE, 2022, v. 17, n. 4, p. 1, doi. 10.1371/journal.pone.0260282

By:

Jain, Kanika;
Stanage, Tyler H.;
Wood, Elizabeth A.;
Cox, Michael M.

Publication type:

Article

Conformational regulation of Escherichia coli DNA polymerase V by RecA and ATP.

Published in:

PLoS Genetics, 2019, v. 15, n. 2, p. 1, doi. 10.1371/journal.pgen.1007956

By:

Jaszczur, Malgorzata M.;
Vo, Dan D.;
Stanciauskas, Ramunas;
Bertram, Jeffrey G.;
Sikand, Adhirath;
Cox, Michael M.;
Woodgate, Roger;
Mak, Chi H.;
Pinaud, Fabien;
Goodman, Myron F.

Publication type:

Article

Deinococcus radiodurans — the consummate survivor.

Published in:

Nature Reviews Microbiology, 2005, v. 3, n. 11, p. 882, doi. 10.1038/nrmicro1264

By:

Cox, Michael M.;
Battista, John R.

Publication type:

Article

RecA acts in trans to allow replication of damaged DNA by DNA polymerase V.

Published in:

Nature, 2006, v. 442, n. 7105, p. 883, doi. 10.1038/nature05042

By:

Schlacher, Katharina;
Cox, Michael M.;
Woodgate, Roger;
Goodman, Myron F.

Publication type:

Article

Foundational concepts and underlying theories for majors in 'biochemistry and molecular biology'.

Published in:

Biochemistry & Molecular Biology Education, 2013, v. 41, n. 5, p. 289, doi. 10.1002/bmb.20727

By:

Tansey, John T.;
Baird, Teaster;
Cox, Michael M.;
Fox, Kristin M.;
Knight, Jennifer;
Sears, Duane;
Bell, Ellis

Publication type:

Article

The SOS Error-Prone DNA Polymerase V Mutasome and β-Sliding Clamp Acting in Concert on Undamaged DNA and during Translesion Synthesis.

Published in:

Cells (2073-4409), 2021, v. 10, n. 5, p. 1083, doi. 10.3390/cells10051083

By:

Sikand, Adhirath;
Jaszczur, Malgorzata;
Bloom, Linda B.;
Woodgate, Roger;
Cox, Michael M.;
Goodman, Myron F.;
Lopez, Bernard S.

Publication type:

Article

Proteome Damage Inflicted by Ionizing Radiation: Advancing a Theme in the Research of Miroslav Radman.

Published in:

Cells (2073-4409), 2021, v. 10, n. 4, p. 954, doi. 10.3390/cells10040954

By:

Bruckbauer, Steven T.;
Minkoff, Benjamin B.;
Sussman, Michael R.;
Cox, Michael M.;
Lopez, Bernard S.;
Matic, Ivan

Publication type:

Article

Physiology of Highly Radioresistant Escherichia coli After Experimental Evolution for 100 Cycles of Selection.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.617806

By:

Bruckbauer, Steven T.;
Martin, Joel;
Minkoff, Benjamin B.;
Veling, Mike T.;
Lancaster, Illissa;
Liu, Jessica;
Trimarco, Joseph D.;
Bushnell, Brian;
Lipzen, Anna;
Wood, Elizabeth A.;
Sussman, Michael R.;
Pennacchio, Christa;
Cox, Michael M.

Publication type:

Article

Directed Evolution of RecA Variants with Enhanced Capacity for Conjugational Recombination.

Published in:

PLoS Genetics, 2015, v. 11, n. 6, p. 1, doi. 10.1371/journal.pgen.1005278

By:

Kim, Taejin;
Chitteni-Pattu, Sindhu;
Cox, Benjamin L.;
Wood, Elizabeth A.;
Sandler, Steven J.;
Cox, Michael M.

Publication type:

Article

A RecA Protein Surface Required for Activation of DNA Polymerase V.

Published in:

PLoS Genetics, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pgen.1005066

By:

Gruber, Angela J.;
Erdem, Aysen L.;
Sabat, Grzegorz;
Karata, Kiyonobu;
Jaszczur, Malgorzata M.;
Vo, Dan D.;
Olsen, Tayla M.;
Woodgate, Roger;
Goodman, Myron F.;
Cox, Michael M.

Publication type:

Article

Rising from the Ashes: DNA Repair in Deinococcus radiodurans.

Published in:

PLoS Genetics, 2010, v. 6, n. 1, p. 1, doi. 10.1371/journal.pgen.1000815

By:

Cox, Michael M.;
Keck, James L.;
Battista, John R.

Publication type:

Article

Defending science education against intelligent design: a call to action.

Published in:

2006

By:

Attie, Alan D.;
Sober, Elliot;
Numbers, Ronald L.;
Amasino, Richard M.;
Cox, Beth;
Berceau, Terese;
Powell, Thomas;
Cox, Michael M.

Publication type:

journal article

Motoring along with the bacterial RecA protein.

Published in:

Nature Reviews Molecular Cell Biology, 2007, v. 8, n. 2, p. 127, doi. 10.1038/nrm2099

By:

Cox, Michael M.

Publication type:

Article

Corrigendum: Physiology of Highly Radioresistant Escherichia coli After Experimental Evolution for 100 Cycles of Selection.

Published in:

2020

By:

Bruckbauer, Steven T.;
Martin, Joel;
Minkoff, Benjamin B.;
Veling, Mike T.;
Lancaster, Illissa;
Liu, Jessica;
Trimarco, Joseph D.;
Bushnell, Brian;
Lipzen, Anna;
Wood, Elizabeth A.;
Sussman, Michael R.;
Pennacchio, Christa;
Cox, Michael M.

Publication type:

Correction Notice

Structural and Functional Studies of H. seropedicae RecA Protein – Insights into the Polymerization of RecA Protein as Nucleoprotein Filament.

Published in:

PLoS ONE, 2016, v. 11, n. 7, p. 1, doi. 10.1371/journal.pone.0159871

By:

Leite, Wellington C.;
Galvão, Carolina W.;
Saab, Sérgio C.;
Iulek, Jorge;
Etto, Rafael M.;
Steffens, Maria B. R.;
Chitteni-Pattu, Sindhu;
Stanage, Tyler;
Keck, James L.;
Cox, Michael M.

Publication type:

Article

DNA Metabolism in Balance: Rapid Loss of a RecA-Based Hyperrec Phenotype.

Published in:

PLoS ONE, 2016, v. 11, n. 4, p. 1, doi. 10.1371/journal.pone.0154137

By:

Bakhlanova, Irina V.;
Dudkina, Alexandra V.;
Wood, Elizabeth A.;
Lanzov, Vladislav A.;
Cox, Michael M.;
Baitin, Dmitry M.

Publication type:

Article

Redox controls RecA protein activity via reversible oxidation of its methionine residues.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.63747

By:

Henry, Camille;
Loiseau, Laurent;
Vergnes, Alexandra;
Vertommen, Didier;
Mérida-Floriano, Angela;
Chitteni-Pattu, Sindhu;
Wood, Elizabeth A.;
Casadesús, Josep;
Cox, Michael M.;
Barras, Frédéric;
Ezraty, Benjamin

Publication type:

Article

P1 Ref Endonuclease: A Molecular Mechanism for Phage-Enhanced Antibiotic Lethality.

Published in:

PLoS Genetics, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pgen.1005797

By:

Ronayne, Erin A.;
Wan, Y. C. Serena;
Boudreau, Beth A.;
Landick, Robert;
Cox, Michael M.

Publication type:

Article

Regulation of Mutagenic DNA Polymerase V Activation in Space and Time.

Published in:

PLoS Genetics, 2015, v. 11, n. 8, p. 1, doi. 10.1371/journal.pgen.1005482

By:

Robinson, Andrew;
McDonald, John P.;
Caldas, Victor E. A.;
Patel, Meghna;
Wood, Elizabeth A.;
Punter, Christiaan M.;
Ghodke, Harshad;
Cox, Michael M.;
Woodgate, Roger;
Goodman, Myron F.;
van Oijen, Antoine M.

Publication type:

Article

RecA‐independent recombination: Dependence on the Escherichia coli RarA protein.

Published in:

Molecular Microbiology, 2021, v. 115, n. 6, p. 1122, doi. 10.1111/mmi.14655

By:

Jain, Kanika;
Wood, Elizabeth A.;
Romero, Zachary J.;
Cox, Michael M.

Publication type:

Article

E scherichia coli rad D ( yejH ) gene: a novel function involved in radiation resistance and double-strand break repair.

Published in:

Molecular Microbiology, 2015, v. 95, n. 5, p. 754, doi. 10.1111/mmi.12885

By:

Chen, Stefanie H.;
Byrne, Rose T.;
Wood, Elizabeth A.;
Cox, Michael M.

Publication type:

Article

Modulating cellular recombination potential through alterations in RecA structure and regulation.

Published in:

Molecular Microbiology, 2010, v. 78, n. 6, p. 1523, doi. 10.1111/j.1365-2958.2010.07424.x

By:

Bakhlanova, Irina V.;
Dudkina, Alexandra V.;
Baitin, Dima M.;
Knight, Kendall L.;
Cox, Michael M.;
Lanzov, Vladislav A.

Publication type:

Article

RecA-mediated SOS induction requires an extended filament conformation but no ATP hydrolysis.

Published in:

Molecular Microbiology, 2008, v. 69, n. 5, p. 1165, doi. 10.1111/j.1365-2958.2008.06341.x

By:

Gruenig, Marielle C.;
Renzette, Nicholas;
Long, Edward;
Chitteni-Pattu, Sindhu;
Inman, Ross B.;
Cox, Michael M.;
Sandler, Steven J.

Publication type:

Article

A variant of the Escherichia coli anaerobic transcription factor FNR exhibiting diminished promoter activation function enhances ionizing radiation resistance.

Published in:

PLoS ONE, 2019, v. 14, n. 1, p. 1, doi. 10.1371/journal.pone.0199482

By:

Bruckbauer, Steven T.;
Trimarco, Joseph D.;
Henry, Camille;
Wood, Elizabeth A.;
Battista, John R.;
Cox, Michael M.

Publication type:

Article

The rarA gene as part of an expanded RecFOR recombination pathway: Negative epistasis and synthetic lethality with ruvB, recG, and recQ.

Published in:

PLoS Genetics, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pgen.1009972

By:

Jain, Kanika;
Wood, Elizabeth A.;
Cox, Michael M.

Publication type:

Article

Controlling genome topology with sequences that trigger post-replication gap formation during replisome passage: the E. coli RRS elements.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 11, p. 6392, doi. 10.1093/nar/gkae320

By:

Pham, Phuong;
Wood, Elizabeth A;
Dunbar, Emma L;
Cox, Michael M;
Goodman, Myron F

Publication type:

Article

RecF protein targeting to postreplication (daughter strand) gaps I: DNA binding by RecF and RecFR.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 11, p. 5699, doi. 10.1093/nar/gkad311

By:

Henry, Camille;
Mbele, Neema;
Cox, Michael M

Publication type:

Article

RecF protein targeting to post-replication (daughter strand) gaps II: RecF interaction with replisomes.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 11, p. 5714, doi. 10.1093/nar/gkad310

By:

Henry, Camille;
Kaur, Gurleen;
Cherry, Megan E;
Henrikus, Sarah S;
Bonde, Nina J;
Sharma, Nischal;
Beyer, Hope A;
Wood, Elizabeth A;
Chitteni-Pattu, Sindhu;
van Oijen, Antoine M;
Robinson, Andrew;
Cox, Michael M

Publication type:

Article

RecA and SSB genome-wide distribution in ssDNA gaps and ends in Escherichia coli.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 11, p. 5527, doi. 10.1093/nar/gkad263

By:

Pham, Phuong;
Wood, Elizabeth A;
Cox, Michael M;
Goodman, Myron F

Publication type:

Article

Interaction with the carboxy-terminal tip of SSB is critical for RecG function in E. coli.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 8, p. 3735, doi. 10.1093/nar/gkad162

By:

Bonde, Nina J;
Henry, Camille;
Wood, Elizabeth A;
Cox, Michael M;
Keck, James L

Publication type:

Article

Host cell RecA activates a mobile element-encoded mutagenic DNA polymerase.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 12, p. 6854, doi. 10.1093/nar/gkac515

By:

Ojha, Debika;
Jaszczur, Malgorzata M;
Sikand, Adhirath;
McDonald, John P;
Robinson, Andrew;
van Oijen, Antoine M;
Mak, Chi H;
Pinaud, Fabien;
Cox, Michael M;
Woodgate, Roger;
Goodman, Myron F

Publication type:

Article

RadD is a RecA-dependent accessory protein that accelerates DNA strand exchange.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 4, p. 2201, doi. 10.1093/nar/gkac041

By:

Bonde, Nina J;
Romero, Zachary J;
Chitteni-Pattu, Sindhu;
Cox, Michael M

Publication type:

Article

Genomic landscape of single-stranded DNA gapped intermediates in Escherichia coli.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 2, p. 937, doi. 10.1093/nar/gkab1269

By:

Pham, Phuong;
Shao, Yijun;
Cox, Michael M;
Goodman, Myron F

Publication type:

Article

Single-molecule live-cell imaging reveals RecB-dependent function of DNA polymerase IV in double strand break repair.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8490, doi. 10.1093/nar/gkaa597

By:

Henrikus, Sarah S;
Henry, Camille;
McGrath, Amy E;
Jergic, Slobodan;
McDonald, John P;
Hellmich, Yvonne;
Bruckbauer, Steven T;
Ritger, Matthew L;
Cherry, Megan E;
Wood, Elizabeth A;
Pham, Phuong T;
Goodman, Myron F;
Woodgate, Roger;
Cox, Michael M;
van Oijen, Antoine M;
Ghodke, Harshad;
Robinson, Andrew

Publication type:

Article

Resolving Toxic DNA repair intermediates in every E. coli replication cycle: critical roles for RecG, Uup and RadD.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8445, doi. 10.1093/nar/gkaa579

By:

Romero, Zachary J;
Chen, Stefanie H;
Armstrong, Thomas;
Wood, Elizabeth A;
van Oijen, Antoine;
Robinson, Andrew;
Cox, Michael M

Publication type:

Article

Development of a single-stranded DNA-binding protein fluorescent fusion toolbox.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6053, doi. 10.1093/nar/gkaa320

By:

Dubiel, Katarzyna;
Henry, Camille;
Spenkelink, Lisanne M;
Kozlov, Alexander G;
Wood, Elizabeth A;
Jergic, Slobodan;
Dixon, Nicholas E;
van Oijen, Antoine M;
Cox, Michael M;
Lohman, Timothy M;
Sandler, Steven J;
Keck, James L

Publication type:

Article

Frequent template switching in postreplication gaps: suppression of deleterious consequences by the Escherichia coli Uup and RadD proteins.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 1, p. 212, doi. 10.1093/nar/gkz960

By:

Romero, Zachary J;
Armstrong, Thomas J;
Henrikus, Sarah S;
Chen, Stefanie H;
Glass, David J;
Ferrazzoli, Alexander E;
Wood, Elizabeth A;
Chitteni-Pattu, Sindhu;
van Oijen, Antoine M;
Lovett, Susan T;
Robinson, Andrew;
Cox, Michael M

Publication type:

Article

5′-to-3′ strand exchange polarity is intrinsic to RecA nucleoprotein filaments in the absence of ATP hydrolysis.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5126, doi. 10.1093/nar/gkz189

By:

Lin, Yu-Hsuan;
Chu, Chia-Chieh;
Fan, Hsiu-Fang;
Wang, Pang-Yen;
Cox, Michael M;
Li, Hung-Wen

Publication type:

Article

RecFOR epistasis group: RecF and RecO have distinct localizations and functions in Escherichia coli.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 6, p. 2946, doi. 10.1093/nar/gkz003

By:

Henrikus, Sarah S;
Henry, Camille;
Ghodke, Harshad;
Wood, Elizabeth A;
Mbele, Neema;
Saxena, Roopashi;
Basu, Upasana;
van Oijen, Antoine M;
Cox, Michael M;
Robinson, Andrew

Publication type:

Article

DNA flap creation by the RarA/MgsA protein of Escherichia coli.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2724, doi. 10.1093/nar/gkw1322

By:

Stanage, Tyler H.;
Page, Asher N.;
Cox, Michael M.

Publication type:

Article

Active displacement of RecA filaments by UvrD translocase activity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4133, doi. 10.1093/nar/gkv186

By:

Petrova, Vessela;
Chen, Stefanie H.;
Molzberger, Eileen T.;
Tomko, Eric;
Chitteni-Pattu, Sindhu;
Haifeng Jia;
Ordabayev, Yerdos;
Lohman, Timothy M.;
Cox, Michael M.

Publication type:

Article

Function of the N-terminal segment of the RecA-dependent nuclease Ref.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 3, p. 1795, doi. 10.1093/nar/gku1330

By:

Gruber, Angela J.;
Olsen, Tayla M.;
Dvorak, Rachel H.;
Cox, Michael M.

Publication type:

Article

RecA-dependent programmable endonuclease Ref cleaves DNA in two distinct steps.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3871, doi. 10.1093/nar/gkt1342

By:

Ronayne, Erin A.;
Cox, Michael M.

Publication type:

Article