Works matching AU Cowell, Lindsay G.

Results: 38

A Functional Analysis of the Spacer of V(D)J Recombination Signal Sequences.

Published in:

PLoS Biology, 2003, v. 1, n. 10, p. 1, doi. 10.1371/journal.pbio.0000001

By:

Lee, Alfred Ian;
Fugmann, Sebastian D;
Cowell, Lindsay G;
Ptaszek, Leon M;
Kelsoe, Garnett;
Schatz, David G

Publication type:

Article

A Functional Analysis of the Spacer of V(D)J Recombination Signal Sequences.

Published in:

PLoS Biology, 2003, v. 1, n. 1, p. 56, doi. 10.1371/journal.pbio.0000001

By:

Lee, Alfred Ian;
Fugmann, Sebastian D.;
Cowell, Lindsay G.;
Ptaszek, Leon M.;
Kelsoe, Garnett;
Schatz, David G.

Publication type:

Article

Data Availability of Open T-Cell Receptor Repertoire Data, a Systematic Assessment.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.918792

By:

Yu-Ning Huang;
Patel, Naresh Amrat;
Mehta, Jay Himanshu;
Ginjala, Srishti;
Brodin, Petter;
Gray, Clive M.;
Patel, Yesha M.;
Cowell, Lindsay G.;
Burkhardt, Amanda M.;
Mangul, Serghei

Publication type:

Article

Prevalence of Select New Symptoms and Conditions Among Persons Aged Younger Than 20 Years and 20 Years or Older at 31 to 150 Days After Testing Positive or Negative for SARS-CoV-2.

Published in:

JAMA Network Open, 2022, v. 5, n. 2, p. e2147053, doi. 10.1001/jamanetworkopen.2021.47053

By:

Hernandez-Romieu, Alfonso C.;
Carton, Thomas W.;
Saydah, Sharon;
Azziz-Baumgartner, Eduardo;
Boehmer, Tegan K.;
Garret, Nedra Y.;
Bailey, L. Charles;
Cowell, Lindsay G.;
Draper, Christine;
Mayer, Kenneth H.;
Nagavedu, Kshema;
Puro, Jon E.;
Rasmussen, Sonja A.;
Trick, William E.;
Wanga, Valentine;
Chevinsky, Jennifer R.;
Jackson, Brendan R.;
Goodman, Alyson B.;
Cope, Jennifer R.;
Gundlapalli, Adi V.

Publication type:

Article

Biophysicochemical motifs in T cell receptor sequences as a potential biomarker for high-grade serous ovarian carcinoma.

Published in:

PLoS ONE, 2020, v. 14, n. 3, p. 1, doi. 10.1371/journal.pone.0229569

By:

Ostmeyer, Jared;
Lucas, Elena;
Christley, Scott;
Lea, Jayanthi;
Monson, Nancy;
Tiro, Jasmin;
Cowell, Lindsay G.

Publication type:

Article

Catch and Bycatch: The Qualitative Effects of Fisheries on Population Vital Rates of Atlantic Croaker.

Published in:

Transactions of the American Fisheries Society, 1999, v. 128, n. 6, p. 1085, doi. 10.1577/1548-8659(1999)128<1085:CABTQE>2.0.CO;2

By:

Diamond, Sandra L.;
Crowder, Larry B.;
Cowell, Lindsay G.

Publication type:

Article

Astrocytic stress response is induced by exposure to astrocyte-binding antibodies expressed by plasmablasts from pediatric patients with acute transverse myelitis.

Published in:

Journal of Neuroinflammation, 2024, v. 21, n. 1, p. 1, doi. 10.1186/s12974-024-03127-2

By:

Smith, Chad;
Telesford, Kiel M.;
Piccirillo, Sara G. M.;
Licon-Munoz, Yamhilette;
Zhang, Wei;
Tse, Key M.;
Rivas, Jacqueline R.;
Joshi, Chaitanya;
Shah, Dilan S.;
Wu, Angela X.;
Trivedi, Ritu;
Christley, Scott;
Qian, Yu;
Cowell, Lindsay G.;
Scheuermann, Richard H.;
Stowe, Ann M.;
Nguyen, Linda;
Greenberg, Benjamin M.;
Monson, Nancy L.

Publication type:

Article

Association between SARS-CoV-2 infection and select symptoms and conditions 31 to 150 days after testing among children and adults.

Published in:

BMC Infectious Diseases, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12879-024-09076-8

By:

Zhang, Yongkang;
Romieu-Hernandez, Alfonso;
Boehmer, Tegan K.;
Azziz-Baumgartner, Eduardo;
Carton, Thomas W.;
Gundlapalli, Adi V.;
Fearrington, Julia;
Nagavedu, Kshema;
Dea, Katherine;
Moyneur, Erick;
Cowell, Lindsay G.;
Kaushal, Rainu;
Mayer, Kenneth H.;
Puro, Jon;
Rasmussen, Sonja A.;
Thacker, Deepika;
Weiner, Mark G.;
Saydah, Sharon;
Block, Jason P.;
PCORnet Network Partners

Publication type:

Article

SoDA: implementation of a 3D alignment algorithm for inference of antigen receptor recombinations.

Published in:

Bioinformatics, 2006, v. 22, n. 4, p. 438, doi. 10.1093/bioinformatics/btk004

By:

Joseph M. Volpe;
Lindsay G. Cowell;
Thomas B. Kepler

Publication type:

Article

Iterative refinement and goal articulation to optimize large language models for clinical information extraction.

Published in:

NPJ Digital Medicine, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s41746-025-01686-z

By:

Hein, David;
Christie, Alana;
Holcomb, Michael;
Xie, Bingqing;
Jain, AJ;
Vento, Joseph;
Rakheja, Neil;
Shakur, Ameer Hamza;
Christley, Scott;
Cowell, Lindsay G.;
Brugarolas, James;
Jamieson, Andrew R.;
Kapur, Payal

Publication type:

Article

VDJServer: A Cloud-Based Analysis Portal and Data Commons for Immune Repertoire Sequences and Rearrangements.

Published in:

Frontiers in Immunology, 2018, p. 1, doi. 10.3389/fimmu.2018.00976

By:

Christley, Scott;
Scarborough, Walter;
Salinas, Eddie;
Rounds, William H.;
Toby, Inimary T.;
Fonner, John M.;
Levin, Mikhail K.;
Kim, Min;
Mock, Stephen A.;
Jordan, Christopher;
Ostmeyer, Jared;
Buntzman, Adam;
Rubelt, Florian;
Davila, Marco L.;
Monson, Nancy L.;
Scheuermann, Richard H.;
Cowell, Lindsay G.

Publication type:

Article

Making progress against rare cancers: A case study on neuroendocrine tumors.

Published in:

Cancer (0008543X), 2024, v. 130, n. 9, p. 1568, doi. 10.1002/cncr.35184

By:

O'Rorke, Michael;
Chrischilles, Elizabeth;
Chamberlain, Alanna M.;
Chrischilles, Elizabeth A.;
Cowell, Lindsay G.;
Dillon, Joseph S.;
Early, Carol;
Else, Tobias;
Gamblin, T. Clark;
Geller, David;
Gellerman, Elyse;
Gryzlak, Brian;
Halfdanarson, Thorvardur R.;
Hamilton, Harley C.;
He, Fiona C.;
Hourcade, Juan Pablo;
Indrees, Kamran;
Kazmi, Syed M.;
Lancaster, William;
Lewis‐Hughes, Amoni

Publication type:

Article

Burden of Renal Cysts Imaging: A Survey of Patients among the Greater Plains Collaborative.

Published in:

Urologia Internationalis, 2022, v. 106, n. 7, p. 693, doi. 10.1159/000517791

By:

Kalot, Mohamad A.;
Dahm, Philipp;
Cowell, Lindsay G.;
Noureddine, Lama;
Mustafa, Reem A.

Publication type:

Article

CD19-Targeted T Cells Rapidly Induce Molecular Remissions in Adults with Chemotherapy-Refractory Acute Lymphoblastic Leukemia.

Published in:

Science Translational Medicine, 2013, v. 5, n. 177, p. 1, doi. 10.1126/scitranslmed.3005930

By:

Brentjens, Renier J.;
Davila, Marco L.;
Riviere, Isabelle;
Park, Jae;
Xiuyan Wang;
Cowell, Lindsay G.;
Bartido, Shirley;
Stefanski, Jolanta;
Taylor, Clare;
Olszewska, Malgorzata;
Borquez-Ojeda, Oriana;
Jinrong Qu;
Wasielewska, Teresa;
Qing He;
Bernal, Yvette;
Rijo, Ivelise V.;
Hedvat, Cyrus;
Kobos, Rachel;
Curran, Kevin;
Steinherz, Peter

Publication type:

Article

VDJPipe: a pipelined tool for pre-processing immune repertoire sequencing data.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1853-z

By:

Christley, Scott;
Levin, Mikhail K.;
Toby, Inimary T.;
Fonner, John M.;
Monson, Nancy L.;
Rounds, William H.;
Rubelt, Florian;
Scarborough, Walter;
Scheuermann, Richard H.;
Cowell, Lindsay G.

Publication type:

Article

Statistical classifiers for diagnosing disease from immune repertoires: a case study using multiple sclerosis.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1814-6

By:

Ostmeyer, Jared;
Christley, Scott;
Rounds, William H.;
Toby, Inimary;
Greenberg, Benjamin M.;
Monson, Nancy L.;
Cowell, Lindsay G.

Publication type:

Article

Computational tools for understanding sequence variability in recombination signals.

Published in:

Immunological Reviews, 2004, v. 200, n. 1, p. 57, doi. 10.1111/j.0105-2896.2004.00171.x

By:

Cowell, Lindsay G.;
Davila, Marco;
Ramsden, Dale;
Kelsoe, Garnett

Publication type:

Article

Severity of acute SARS-CoV-2 infection and risk of new-onset autoimmune disease: A RECOVER initiative study in nationwide U.S. cohorts.

Published in:

PLoS ONE, 2025, v. 20, n. 6, p. 1, doi. 10.1371/journal.pone.0324513

By:

Wuller, Shannon;
Singer, Nora G.;
Lewis, Colby;
Karlson, Elizabeth W.;
Schulert, Grant S.;
Goldman, Jason D.;
Hadlock, Jennifer;
Arnold, Jonathan;
Hirabayashi, Kathryn;
Stiles, Lauren E.;
Kleinman, Lawrence C.;
Cowell, Lindsay G.;
Hornig, Mady;
Hall, Margaret A.;
Weiner, Mark G.;
Koropsak, Michael;
Lamendola-Essel, Michelle F.;
Kenney, Rachel;
Moffitt, Richard A.;
Abedian, Sajjad

Publication type:

Article

Factors Associated With Receipt of Molecular Testing and its Impact on Time to Initial Systemic Therapy in Metastatic Non-Small Cell Lung Cancer.

Published in:

Clinical Lung Cancer, 2023, v. 24, n. 4, p. 305, doi. 10.1016/j.cllc.2023.03.001

By:

Osazuwa-Peters, Oyomoare L.;
Wilson, Lauren E.;
Check, Devon K.;
Roberts, Megan C.;
Srinivasan, Swetha;
Clark, Amy G.;
Crawford, Jeffrey;
Chrischilles, Elizabeth;
Carnahan, Ryan M.;
Campbell, W. Scott;
Cowell, Lindsay G.;
Greenlee, Robert;
Abbott, Andrea M.;
Mosa, Abu S. M.;
Mandhadi, Vasanthi;
Stoddard, Alexander;
Dinan, Michaela A.

Publication type:

Article

Neonate-primed CD8+ memory cells rival adult-primed memory cells in antigen-driven expansion and anti-viral protection.

Published in:

International Immunology, 2006, v. 18, n. 2, p. 249, doi. 10.1093/intimm/dxh360

By:

Shaza A. Fadel;
Lindsay G. Cowell;
Shui Cao;
Daniel A. Ozaki;
Thomas B. Kepler;
Douglas A. Steeber;
Marcella Sarzotti

Publication type:

Article

Individual heritable differences result in unique cell lymphocyte receptor repertoires of naïve and antigen-experienced cells.

Published in:

Nature Communications, 2016, v. 7, n. 3, p. 11112, doi. 10.1038/ncomms11112

By:

Rubelt, Florian;
Bolen, Christopher R.;
McGuire, Helen M.;
Heiden, Jason A. Vander;
Gadala-Maria, Daniel;
Levin, Mikhail;
M. Euskirchen, Ghia;
Mamedov, Murad R.;
Swan, Gary E.;
Dekker, Cornelia L.;
Cowell, Lindsay G.;
Kleinstein, Steven H.;
Davis, Mark M.

Publication type:

Article

The Infectious Disease Ontology in the age of COVID-19.

Published in:

Journal of Biomedical Semantics, 2021, v. 12, n. 1, p. 1, doi. 10.1186/s13326-021-00245-1

By:

Babcock, Shane;
Beverley, John;
Cowell, Lindsay G.;
Smith, Barry

Publication type:

Article

owlcpp: a C++ library for working with OWL ontologies.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0035-z

By:

Levin, Mikhail K.;
Cowell, Lindsay G.

Publication type:

Article

Blood‐based biomarkers of human papillomavirus–associated cancers: A systematic review and meta‐analysis.

Published in:

Cancer (0008543X), 2021, v. 127, n. 6, p. 850, doi. 10.1002/cncr.33221

By:

Balachandra, Sanjana;
Kusin, Samuel B.;
Lee, Rebecca;
Blackwell, James‐Michael;
Tiro, Jasmin A.;
Cowell, Lindsay G.;
Chiang, Cheng‐Ming;
Wu, Shwu‐Yuan;
Varma, Sanskriti;
Rivera, Erika L.;
Mayo, Helen G.;
Ding, Lianghao;
Sumer, Baran D.;
Lea, Jayanthi S.;
Bagrodia, Aditya;
Farkas, Linda M.;
Wang, Richard;
Fakhry, Carole;
Dahlstrom, Kristina R.;
Sturgis, Erich M.

Publication type:

Article

Logical Development of the Cell Ontology.

Published in:

BMC Bioinformatics, 2011, v. 12, n. 1, p. 1, doi. 10.1186/1471-2105-12-6

By:

Meehan, Terrence F.;
Masci, Anna Maria;
Abdulla, Amina;
Cowell, Lindsay G.;
Blake, Judith A.;
Mungall, Christopher J.;
Diehl, Alexander D.

Publication type:

Article

An improved ontological representation of dendritic cells as a paradigm for all cell types.

Published in:

BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-70

By:

Masci, Anna Maria;
Arighi, Cecilia N.;
Diehl, Alexander D.;
Lieberman, Anne E.;
Mungall, Chris;
Scheuermann, Richard H.;
Smith, Barry;
Cowell, Lindsay G.

Publication type:

Article

iReceptor: A platform for querying and analyzing antibody/B‐cell and T‐cell receptor repertoire data across federated repositories.

Published in:

Immunological Reviews, 2018, v. 284, n. 1, p. 24, doi. 10.1111/imr.12666

By:

Corrie, Brian D.;
Marthandan, Nishanth;
Zimonja, Bojan;
Jaglale, Jerome;
Zhou, Yang;
Barr, Emily;
Knoetze, Nicole;
Breden, Frances M. W.;
Christley, Scott;
Scott, Jamie K.;
Cowell, Lindsay G.;
Breden, Felix

Publication type:

Article

T Cell Receptor Repertoires Acquired via Routine Pap Testing May Help Refine Cervical Cancer and Precancer Risk Estimates.

Published in:

Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2021.624230

By:

Christley, Scott;
Ostmeyer, Jared;
Quirk, Lisa;
Zhang, Wei;
Sirak, Bradley;
Giuliano, Anna R.;
Zhang, Song;
Monson, Nancy;
Tiro, Jasmin;
Lucas, Elena;
Cowell, Lindsay G.

Publication type:

Article

The Future of Blood Testing Is the Immunome.

Published in:

Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2021.626793

By:

Arnaout, Ramy A.;
Prak, Eline T. Luning;
Schwab, Nicholas;
Rubelt, Florian;
Arora, Rohit;
Bashford-Rogers, Rachael;
Breden, Felix;
Bukhari, Syed Ahmad Chan;
Corrie, Brian;
Cowell, Lindsay G.;
Efroni, Sol;
Gooley, Christopher;
Greiff, Victor;
Heiden, Jason Vander;
Koguchi, Yoshinobu;
Langerak, Ton;
Lim, Theam Soon;
Prak, Eline Luning;
Mariotti-Ferrandiz, Encarnita;
Marquez, Susanna

Publication type:

Article

TCRMatch: Predicting T-Cell Receptor Specificity Based on Sequence Similarity to Previously Characterized Receptors.

Published in:

Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2021.640725

By:

Chronister, William D.;
Crinklaw, Austin;
Mahajan, Swapnil;
Vita, Randi;
Koşaloğlu-Yalçın, Zeynep;
Yan, Zhen;
Greenbaum, Jason A.;
Jessen, Leon E.;
Nielsen, Morten;
Christley, Scott;
Cowell, Lindsay G.;
Sette, Alessandro;
Peters, Bjoern

Publication type:

Article

Anti-Obesity Medications and the Risk of Obesity-Related Cancers in Older Women: A Propensity Score Matching Analysis of 2007–2015 SEER-Medicare Data.

Published in:

Cancers, 2025, v. 17, n. 10, p. 1624, doi. 10.3390/cancers17101624

By:

Abdelgadir, Omer;
Hussain, Maryam R.;
Hollis-Hansen, Kelseanna;
Barcenas, Carlos H.;
Kuo, Yong-Fang;
Skinner, Celette S.;
Cowell, Lindsay G.;
Messiah, Sarah E.;
Lopez, David S.

Publication type:

Article

Coordinating virus research: The Virus Infectious Disease Ontology.

Published in:

PLoS ONE, 2024, v. 19, n. 1, p. 1, doi. 10.1371/journal.pone.0285093

By:

Beverley, John;
Babcock, Shane;
Carvalho, Gustavo;
Cowell, Lindsay G.;
Duesing, Sebastian;
He, Yongqun;
Hurley, Regina;
Merrell, Eric;
Scheuermann, Richard H.;
Smith, Barry

Publication type:

Article

A genome-wide association study of variants associated with acquisition of Staphylococcus aureus bacteremia in a healthcare setting.

Published in:

BMC Infectious Diseases, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2334-14-83

By:

Nelson, Charlotte L.;
Pelak, Kimberly;
Podgoreanu, Mihai V.;
Sun Hee Ahn;
Scott, William K.;
Allen, Andrew S.;
Cowell, Lindsay G.;
Rude, Thomas H.;
Yurong Zhang;
Tong, Amy;
Ruffin, Felicia;
Sharma-Kuinkel, Batu K.;
Fowler Jr., Vance G.

Publication type:

Article

A genome-wide association study of variants associated with acquisition of Staphylococcus aureus bacteremia in a healthcare setting.

Published in:

2014

By:

Nelson, Charlotte L;
Pelak, Kimberly;
Podgoreanu, Mihai V;
Ahn, Sun Hee;
Scott, William K;
Allen, Andrew S;
Cowell, Lindsay G;
Rude, Thomas H;
Zhang, Yurong;
Tong, Amy;
Ruffin, Felicia;
Sharma-Kuinkel, Batu K;
Fowler Jr, Vance G;
Fowler, Vance G Jr

Publication type:

journal article

Differences in COVID-19 Outpatient Antiviral Treatment Among Adults Aged ≥65 Years by Age Group — National Patient-Centered Clinical Research Network, United States, April 2022–September 2023.

Published in:

MMWR: Morbidity & Mortality Weekly Report, 2024, v. 73, n. 39, p. 876, doi. 10.15585/mmwr.mm7339a3

By:

Quinlan, Claire M.;
Shah, Melisa M.;
DeSantis, Carol E.;
Bertumen, J. Bradford;
Draper, Christine;
Ahmad, Faraz S.;
Arnold, Jonathan;
Mayer, Kenneth H.;
Carton, Thomas W.;
Cowell, Lindsay G.;
Smith, Samantha;
Saydah, Sharon;
Jones, Jefferson M.;
Patel, Pragna;
Hagen, Melissa Briggs;
Block, Jason;
Koumans, Emily H.

Publication type:

Article

Cardiac Complications After SARS-CoV-2 Infection and mRNA COVID-19 Vaccination — PCORnet, United States, January 2021–January 2022.

Published in:

MMWR: Morbidity & Mortality Weekly Report, 2022, v. 71, n. 14, p. 517, doi. 10.15585/mmwr.mm7114e1

By:

Block, Jason P.;
Boehmer, Tegan K.;
Forrest, Christopher B.;
Carton, Thomas W.;
Lee, Grace M.;
Ajani, Umed A.;
Christakis, Dimitri A.;
Cowell, Lindsay G.;
Draper, Christine;
Ghildayal, Nidhi;
Harris, Aaron M.;
Kappelman, Michael D.;
Ko, Jean Y.;
Mayer, Kenneth H.;
Nagavedu, Kshema;
Oster, Matthew E.;
Paranjape, Anuradha;
Puro, Jon;
Ritchey, Matthew D.;
Shay, David K.

Publication type:

Article

Memory B cells from a subset of treatment-naïve relapsing-remitting multiple sclerosis patients elicit CD4.

Published in:

European Journal of Immunology, 2010, v. 40, n. 10, p. 2942, doi. 10.1002/eji.201040516

By:

Harp, Christopher T.;
Ireland, Sara;
Davis, Laurie S.;
Remington, Gina;
Cassidy, Bonnie;
Cravens, Petra D.;
Stuve, Olaf;
Lovett-Racke, Amy E.;
Eagar, Todd N.;
Greenberg, Benjamin M.;
Racke, Michael K.;
Cowell, Lindsay G.;
Karandikar, Nitin J.;
Frohman, Elliot M.;
Monson, Nancy L.

Publication type:

Article

The antibody genetics of multiple sclerosis: comparing next-generation sequencing to Sanger sequencing.

Published in:

Frontiers in Neurology, 2014, v. 5, p. 1, doi. 10.3389/fneur.2014.00166

By:

Rounds, William H.;
Ligocki, Ann J.;
Levin, Mikhail K.;
Greenberg, Benjamin M.;
Bigwood, Douglas W.;
Eastman, Eric M.;
Cowell, Lindsay G.;
Monson, Nancy L.

Publication type:

Article