Found: 14

Select item for more details and to access through your institution.

  • Benchmarking computational variant effect predictors by their ability to infer human traits.

    Published in:
    Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03314-7
    By:
    • Tabet, Daniel R.;
    • Kuang, Da;
    • Lancaster, Megan C.;
    • Li, Roujia;
    • Liu, Karen;
    • Weile, Jochen;
    • Coté, Atina G.;
    • Wu, Yingzhou;
    • Hegele, Robert A.;
    • Roden, Dan M.;
    • Roth, Frederick P.
    Publication type:
    Article

  • Pacybara: accurate long-read sequencing for barcoded mutagenized allelic libraries.

    Published in:
    Bioinformatics, 2024, v. 40, n. 4, p. 1, doi. 10.1093/bioinformatics/btae182
    By:
    • Weile, Jochen;
    • Ferra, Gabrielle;
    • Boyle, Gabriel;
    • Pendyala, Sriram;
    • Amorosi, Clara;
    • Yeh, Chiann-Ling;
    • Cote, Atina G;
    • Kishore, Nishka;
    • Tabet, Daniel;
    • Loggerenberg, Warren van;
    • Rayhan, Ashyad;
    • Fowler, Douglas M;
    • Dunham, Maitreya J;
    • Roth, Frederick P
    Publication type:
    Article

  • A comprehensive map of human glucokinase variant activity.

    Published in:
    Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02935-8
    By:
    • Gersing, Sarah;
    • Cagiada, Matteo;
    • Gebbia, Marinella;
    • Gjesing, Anette P.;
    • Coté, Atina G.;
    • Seesankar, Gireesh;
    • Li, Roujia;
    • Tabet, Daniel;
    • Weile, Jochen;
    • Stein, Amelie;
    • Gloyn, Anna L.;
    • Hansen, Torben;
    • Roth, Frederick P.;
    • Lindorff-Larsen, Kresten;
    • Hartmann-Petersen, Rasmus
    Publication type:
    Article

  • satmut_utils: a simulation and variant calling package for multiplexed assays of variant effect.

    Published in:
    Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02922-z
    By:
    • Hoskins, Ian;
    • Sun, Song;
    • Cote, Atina;
    • Roth, Frederick P.;
    • Cenik, Can
    Publication type:
    Article

  • Next-generation large-scale binary protein interaction network for Drosophila melanogaster.

    Published in:
    Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37876-0
    By:
    • Tang, Hong-Wen;
    • Spirohn, Kerstin;
    • Hu, Yanhui;
    • Hao, Tong;
    • Kovács, István A.;
    • Gao, Yue;
    • Binari, Richard;
    • Yang-Zhou, Donghui;
    • Wan, Kenneth H.;
    • Bader, Joel S.;
    • Balcha, Dawit;
    • Bian, Wenting;
    • Booth, Benjamin W.;
    • Coté, Atina G.;
    • de Rouck, Steffi;
    • Desbuleux, Alice;
    • Goh, Kah Yong;
    • Kim, Dae-Kyum;
    • Knapp, Jennifer J.;
    • Lee, Wen Xing
    Publication type:
    Article

  • A proactive genotype-to-patient-phenotype map for cystathionine beta-synthase.

    Published in:
    Genome Medicine, 2020, v. 12, n. 1, p. 1, doi. 10.1186/s13073-020-0711-1
    By:
    • Sun, Song;
    • Weile, Jochen;
    • Verby, Marta;
    • Wu, Yingzhou;
    • Wang, Yang;
    • Cote, Atina G.;
    • Fotiadou, Iosifina;
    • Kitaygorodsky, Julia;
    • Vidal, Marc;
    • Rine, Jasper;
    • Ješina, Pavel;
    • Kožich, Viktor;
    • Roth, Frederick P.
    Publication type:
    Article

  • A web application and service for imputing and visualizing missense variant effect maps.

    Published in:
    Bioinformatics, 2019, v. 35, n. 17, p. 3191, doi. 10.1093/bioinformatics/btz012
    By:
    • Wu, Yingzhou;
    • Weile, Jochen;
    • Cote, Atina G;
    • Sun, Song;
    • Knapp, Jennifer;
    • Verby, Marta;
    • Roth, Frederick P
    Publication type:
    Article

  • Mapping DNA damage-dependent genetic interactions in yeast via party mating and barcode fusion genetics.

    Published in:
    Molecular Systems Biology, 2018, v. 14, n. 5, p. 1, doi. 10.15252/msb.20177985
    By:
    • Díaz‐Mejía, J Javier;
    • Celaj, Albi;
    • Mellor, Joseph C;
    • Coté, Atina;
    • Balint, Attila;
    • Ho, Brandon;
    • Bansal, Pritpal;
    • Shaeri, Fatemeh;
    • Gebbia, Marinella;
    • Weile, Jochen;
    • Verby, Marta;
    • Karkhanina, Anna;
    • Zhang, YiFan;
    • Wong, Cassandra;
    • Rich, Justin;
    • Prendergast, D'Arcy;
    • Gupta, Gaurav;
    • Öztürk, Sedide;
    • Durocher, Daniel;
    • Brown, Grant W
    Publication type:
    Article

  • A framework for exhaustively mapping functional missense variants.

    Published in:
    Molecular Systems Biology, 2017, v. 13, n. 12, p. 1, doi. 10.15252/msb.20177908
    By:
    • Weile, Jochen;
    • Sun, Song;
    • Cote, Atina G;
    • Knapp, Jennifer;
    • Verby, Marta;
    • Mellor, Joseph C;
    • Wu, Yingzhou;
    • Pons, Carles;
    • Wong, Cassandra;
    • Lieshout, Natascha;
    • Yang, Fan;
    • Tasan, Murat;
    • Tan, Guihong;
    • Yang, Shan;
    • Fowler, Douglas M;
    • Nussbaum, Robert;
    • Bloom, Jesse D;
    • Vidal, Marc;
    • Hill, David E;
    • Aloy, Patrick
    Publication type:
    Article

  • Assessing predictions of fitness effects of missense mutations in SUMO-conjugating enzyme UBE2I.

    Published in:
    Human Mutation, 2017, v. 38, n. 9, p. 1051, doi. 10.1002/humu.23293
    By:
    • Zhang, Jing;
    • Kinch, Lisa N.;
    • Cong, Qian;
    • Weile, Jochen;
    • Sun, Song;
    • Cote, Atina G.;
    • Roth, Frederick P.;
    • Grishin, Nick V.
    Publication type:
    Article

  • Pooled-matrix protein interaction screens using Barcode Fusion Genetics.

    Published in:
    Molecular Systems Biology, 2016, v. 12, n. 4, p. n/a, doi. 10.15252/msb.20156660
    By:
    • Yachie, Nozomu;
    • Petsalaki, Evangelia;
    • Mellor, Joseph C;
    • Weile, Jochen;
    • Jacob, Yves;
    • Verby, Marta;
    • Ozturk, Sedide B;
    • Li, Siyang;
    • Cote, Atina G;
    • Mosca, Roberto;
    • Knapp, Jennifer J;
    • Ko, Minjeong;
    • Yu, Analyn;
    • Gebbia, Marinella;
    • Sahni, Nidhi;
    • Yi, Song;
    • Tyagi, Tanya;
    • Sheykhkarimli, Dayag;
    • Roth, Jonathan F;
    • Wong, Cassandra
    Publication type:
    Article

  • Evaluation of methods for modeling transcription factor sequence specificity.

    Published in:
    Nature Biotechnology, 2013, v. 31, n. 2, p. 126, doi. 10.1038/nbt.2486
    By:
    • Weirauch, Matthew T;
    • Cote, Atina;
    • Norel, Raquel;
    • Annala, Matti;
    • Zhao, Yue;
    • Riley, Todd R;
    • Saez-Rodriguez, Julio;
    • Cokelaer, Thomas;
    • Vedenko, Anastasia;
    • Talukder, Shaheynoor;
    • Agius, Phaedra;
    • Arvey, Aaron;
    • Bucher, Philipp;
    • Callan, Curtis G;
    • Chang, Cheng Wei;
    • Chen, Chien-Yu;
    • Chen, Yong-Syuan;
    • Chu, Yu-Wei;
    • Grau, Jan;
    • Grosse, Ivo
    Publication type:
    Article

  • The draft genome and transcriptome of Cannabis sativa.

    Published in:
    Genome Biology, 2011, v. 12, n. 10, p. 1, doi. 10.1186/gb-2011-12-10-r102
    By:
    • Bakel, Harm van;
    • Stout, Jake M.;
    • Cote, Atina G.;
    • Tallon, Carling M.;
    • Sharpe, Andrew G.;
    • Hughes, Timothy R.;
    • Page, Jonathan E.
    Publication type:
    Article

  • Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arrays.

    Published in:
    Nucleic Acids Research, 2011, v. 39, n. 11, p. 4680, doi. 10.1093/nar/gkq1303
    By:
    • Lam, Kathy N.;
    • van Bakel, Harm;
    • Cote, Atina G.;
    • van der Ven, Anton;
    • Hughes, Timothy R.
    Publication type:
    Article