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The impact of health inequity on spatial variation of COVID-19 transmission in England.
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- PLoS Computational Biology, 2024, v. 20, n. 5, p. 1, doi. 10.1371/journal.pcbi.1012141
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- Article
Aetiology of vaginal discharge, urethral discharge, and genital ulcer in sub-Saharan Africa: A systematic review and meta-regression.
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- PLoS Medicine, 2024, v. 21, n. 5, p. 1, doi. 10.1371/journal.pmed.1004385
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- Article
Author Correction: Epidemiological drivers of transmissibility and severity of SARS-CoV-2 in England.
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- 2023
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- Correction Notice
Retrospective evaluation of real-time estimates of global COVID-19 transmission trends and mortality forecasts.
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- PLoS ONE, 2023, v. 18, n. 10, p. 1, doi. 10.1371/journal.pone.0286199
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- Article
Scoring epidemiological forecasts on transformed scales.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011393
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- Article
Estimating the epidemic reproduction number from temporally aggregated incidence data: A statistical modelling approach and software tool.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011439
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- Article
Epidemiological drivers of transmissibility and severity of SARS-CoV-2 in England.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-39661-5
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- Article
Comparing human and model-based forecasts of COVID-19 in Germany and Poland.
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- PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010405
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- Article
Reconstruction of transmission chains of SARS-CoV-2 amidst multiple outbreaks in a geriatric acute-care hospital: a combined retrospective epidemiological and genomic study.
- Published in:
- eLife, 2022, p. 1, doi. 10.7554/eLife.76854
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- Article
Reconstruction of transmission chains of SARS-CoV-2 amidst multiple outbreaks in a geriatric acute-care hospital: a combined retrospective epidemiological and genomic study.
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- eLife, 2022, p. 1, doi. 10.7554/eLife.76854
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- Article
Real-time estimation of the epidemic reproduction number: Scoping review of the applications and challenges.
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- PLoS Digital Health, 2022, v. 1, n. 6, p. 1, doi. 10.1371/journal.pdig.0000052
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- Article
Occupational and community risk of SARS-CoV-2 infection among employees of a long-term care facility: an observational study.
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- Antimicrobial Resistance & Infection Control, 2022, v. 11, n. 1, p. 1, doi. 10.1186/s13756-022-01092-0
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- Article
Publisher Correction: Characterising within-hospital SARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves.
- Published in:
- 2022
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- Correction Notice
Characterising within-hospitalSARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28681-2
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- Article
PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial.
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- PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009301
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- Article
Comparing the responses of the UK, Sweden and Denmark to COVID-19 using counterfactual modelling.
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- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-95699-9
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- Article
A Comparative Analysis of Statistical Methods to Estimate the Reproduction Number in Emerging Epidemics, With Implications for the Current Coronavirus Disease 2019 (COVID-19) Pandemic.
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- Clinical Infectious Diseases, 2021, v. 73, n. 1, p. e215, doi. 10.1093/cid/ciaa1599
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- Article
Using digital surveillance tools for near real-time mapping of the risk of infectious disease spread.
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- NPJ Digital Medicine, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s41746-021-00442-3
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- Article
Genetic evidence for the association between COVID-19 epidemic severity and timing of non-pharmaceutical interventions.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22366-y
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- Article
A Quantitative Framework for Defining the End of an Infectious Disease Outbreak: Application to Ebola Virus Disease.
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- American Journal of Epidemiology, 2021, v. 190, n. 4, p. 642, doi. 10.1093/aje/kwaa212
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- Article
Reduction in mobility and COVID-19 transmission.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21358-2
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- Article
Bayesian inference of transmission chains using timing of symptoms, pathogen genomes and contact data.
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- PLoS Computational Biology, 2019, v. 15, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006930
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- Article
A graph-based evidence synthesis approach to detecting outbreak clusters: An application to dog rabies.
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- PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006554
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- Article
outbreaker2: a modular platform for outbreak reconstruction
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2330-z
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- Article
When are pathogen genome sequences informative of transmission events?
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- PLoS Pathogens, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.ppat.1006885
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- Article
Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.
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- Molecular Biology & Evolution, 2017, v. 34, n. 1, p. 185, doi. 10.1093/molbev/msw217
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- Article
Exposure Patterns Driving Ebola Transmission in West Africa: A Retrospective Observational Study.
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- 2016
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- journal article
The Incidence Patterns Model to Estimate the Distribution of New HIV Infections in Sub-Saharan Africa: Development and Validation of a Mathematical Model.
- Published in:
- 2016
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- Publication type:
- journal article
Impact and Cost-Effectiveness of Point-Of-Care CD4 Testing on the HIV Epidemic in South Africa.
- Published in:
- PLoS ONE, 2016, v. 11, n. 7, p. 1, doi. 10.1371/journal.pone.0158303
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- Article
How Can Viral Dynamics Models Inform Endpoint Measures in Clinical Trials of Therapies for Acute Viral Infections?
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- PLoS ONE, 2016, v. 11, n. 7, p. 1, doi. 10.1371/journal.pone.0158237
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- Article
Dispersion of the HIV-1 Epidemic in Men Who Have Sex with Men in the Netherlands: A Combined Mathematical Model and Phylogenetic Analysis.
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- 2015
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- journal article
Potential Biases in Estimating Absolute and Relative Case-Fatality Risks during Outbreaks.
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- PLoS Neglected Tropical Diseases, 2015, v. 9, n. 7, p. 1, doi. 10.1371/journal.pntd.0003846
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- Article
HIV Treatment-As-Prevention Research: Taking the Right Road at the Crossroads.
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- PLoS Medicine, 2015, v. 12, n. 3, p. 1, doi. 10.1371/journal.pmed.1001800
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- Article
Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data.
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- PLoS Computational Biology, 2014, v. 10, n. 1, p. 1, doi. 10.1371/journal.pcbi.1003457
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- Article
HPTN 071 (PopART): A Cluster-Randomized Trial of the Population Impact of an HIV Combination Prevention Intervention Including Universal Testing and Treatment: Mathematical Model.
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- PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0084511
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- Publication type:
- Article
A New Framework and Software to Estimate Time-Varying Reproduction Numbers During Epidemics.
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- American Journal of Epidemiology, 2013, v. 178, n. 9, p. 1505, doi. 10.1093/aje/kwt133
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- Article
Transmission parameters of the A/H1N1 (2009) influenza virus pandemic: a review.
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- Influenza & Other Respiratory Viruses, 2011, v. 5, n. 5, p. 306, doi. 10.1111/j.1750-2659.2011.00234.x
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- Article
Temporal Variability and Social Heterogeneity in Disease Transmission: The Case of SARS in Hong Kong.
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- PLoS Computational Biology, 2009, v. 5, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000471
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- Article