Works matching AU Cordes, Matthew

Results: 33

Structural features and the persistence of acquired proteins.

Published in:

Proteomics, 2008, v. 8, n. 22, p. 4772, doi. 10.1002/pmic.200800061

By:

Narra, Hema Prasad;
Cordes, Matthew H. J.;
Ochman, Howard

Publication type:

Article

Measuring 1HN temperature coefficients in invisible protein states by relaxation dispersion NMR spectroscopy.

Published in:

Journal of Biomolecular NMR, 2011, v. 50, n. 1, p. 13, doi. 10.1007/s10858-011-9498-0

By:

Bouvignies, Guillaume;
Vallurupalli, Pramodh;
Cordes, Matthew H. J.;
Hansen, D. Flemming;
Kay, Lewis E.

Publication type:

Article

A simple method for measuring signs of 1HN chemical shift differences between ground and excited protein states.

Published in:

Journal of Biomolecular NMR, 2010, v. 47, n. 2, p. 135, doi. 10.1007/s10858-010-9418-8

By:

Bouvignies, Guillaume;
Korzhnev, Dmitry;
Neudecker, Philipp;
Hansen, D.;
Cordes, Matthew;
Kay, Lewis

Publication type:

Article

Cannon–Thurston maps for CAT(0) groups with isolated flats.

Published in:

Mathematische Annalen, 2022, v. 384, n. 1/2, p. 1, doi. 10.1007/s00208-021-02245-z

By:

Benjamin, Beeker;
Cordes, Matthew;
Gardam, Giles;
Gupta, Radhika;
Stark, Emily

Publication type:

Article

Conservation and diversity in the immunity regions of wild phages with the immunity specificity of phage λ.

Published in:

Molecular Microbiology, 2007, v. 64, n. 1, p. 232, doi. 10.1111/j.1365-2958.2007.05650.x

By:

Degnan, Patrick H.;
Michalowski, Christine B.;
Babić, Andrea C.;
Cordes, Matthew H. J.;
Little, John W.

Publication type:

Article

Regularity of Morse geodesics and growth of stable subgroups.

Published in:

Journal of Topology, 2022, v. 15, n. 3, p. 1217, doi. 10.1112/topo.12245

By:

Cordes, Matthew;
Russell, Jacob;
Spriano, Davide;
Zalloum, Abdul

Publication type:

Article

Evolutionary dynamics of origin and loss in the deep history of phospholipase D toxin genes.

Published in:

BMC Evolutionary Biology, 2018, v. 18, n. 1, p. 1, doi. 10.1186/s12862-018-1302-2

By:

Cordes, Matthew H. J.;
Binford, Greta J.

Publication type:

Article

Lateral gene transfer of a dermonecrotic toxin between spiders and bacteria.

Published in:

Bioinformatics, 2006, v. 22, n. 3, p. 264, doi. 10.1093/bioinformatics/bti811

By:

Matthew H. J. Cordes;
Greta J. Binford

Publication type:

Article

The Recent De Novo Origin of Protein C-Termini.

Published in:

Genome Biology & Evolution, 2015, v. 7, n. 6, p. 1686, doi. 10.1093/gbe/evv098

By:

Andreatta, Matthew E.;
Levine, Joshua A.;
Foy, Scott G.;
Guzman, Lynette D.;
Kosinski, Luke J.;
Cordes, Matthew H. J.;
Masel, Joanna

Publication type:

Article

Specificity of Loxosceles α clade phospholipase D enzymes for choline-containing lipids: Role of a conserved aromatic cage.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 2, p. 1, doi. 10.1371/journal.pcbi.1009871

By:

Moutoussamy, Emmanuel E.;
Waheed, Qaiser;
Binford, Greta J.;
Khan, Hanif M.;
Moran, Shane M.;
Eitel, Anna R.;
Cordes, Matthew H. J.;
Reuter, Nathalie

Publication type:

Article

Protein salvage and repurposing in evolution: Phospholipase D toxins are stabilized by a remodeled scrap of a membrane association domain.

Published in:

Protein Science: A Publication of the Protein Society, 2023, v. 32, n. 7, p. 1, doi. 10.1002/pro.4701

By:

Cordes, Matthew H. J.;
Sundman, Alexandra K.;
Fox, Holden C.;
Binford, Greta J.

Publication type:

Article

Multistep mutational transformation of a protein fold through structural intermediates.

Published in:

Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 10, p. 1767, doi. 10.1002/pro.3488

By:

Kumirov, Vlad K.;
Dykstra, Emily M.;
Hall, Branwen M.;
Anderson, William J.;
Szyszka, Taylor N.;
Cordes, Matthew H. J.

Publication type:

Article

A polymetamorphic protein.

Published in:

Protein Science: A Publication of the Protein Society, 2013, v. 22, n. 5, p. 641, doi. 10.1002/pro.2248

By:

Stewart, Katie L.;
Dodds, Eric D.;
Wysocki, Vicki H.;
Cordes, Matthew H. J.

Publication type:

Article

N15 Cro and λ Cro: Orthologous DNA-binding domains with completely different but equally effective homodimer interfaces.

Published in:

Protein Science: A Publication of the Protein Society, 2008, v. 17, n. 5, p. 803, doi. 10.1110/ps.073330808

By:

Dubrava, Matthew S.;
Ingram, Wendy M.;
Roberts, Sue A.;
Weichsel, Andrzej;
Montfort, William R.;
Cordes, Matthew H.J.

Publication type:

Article

Molecular Evolution, Functional Variation, and Proposed Nomenclature of the Gene Family That Includes Sphingomyelinase D in Sicariid Spider Venoms.

Published in:

Molecular Biology & Evolution, 2009, v. 26, n. 3, p. 547

By:

Binford, Greta J.;
Bodner, Melissa R.;
Cordes, Matthew H. J.;
Baldwin, Katherine L.;
Rynerson, Melody R.;
Burns, Scott N.;
Zobel-Thropp, Pamela A.

Publication type:

Article

Boundary Convex Cocompactness and Stability of Subgroups of Finitely Generated Groups.

Published in:

IMRN: International Mathematics Research Notices, 2019, v. 2019, n. 6, p. 1699, doi. 10.1093/imrn/rnx166

By:

Cordes, Matthew;
Durham, Matthew Gentry

Publication type:

Article

Random Nilpotent Groups I.

Published in:

IMRN: International Mathematics Research Notices, 2018, v. 2018, n. 7, p. 1921, doi. 10.1093/imrn/rnv370

By:

Cordes, Matthew;
Moon Duchin;
Yen Duong;
Meng-Che Ho;
Sánchez, Andrew P.

Publication type:

Article

Tolerance of a protein to multiple polar-to-hydrophobic surface substitutions.

Published in:

Protein Science: A Publication of the Protein Society, 1999, v. 8, n. 2, p. 318

By:

CORDES, MATTHEW H.J.;
SAUER, ROBERT T.

Publication type:

Article

Increased sequence hydrophobicity reduces conformational specificity: A mutational case study of the Arc repressor protein.

Published in:

Proteins, 2019, v. 87, n. 1, p. 23, doi. 10.1002/prot.25613

By:

Stewart, Katie L.;
Rathore, Deepali;
Dodds, Eric D.;
Cordes, Matthew H. J.

Publication type:

Article

A role for indels in the evolution of Cro protein folds.

Published in:

Proteins, 2013, v. 81, n. 11, p. 1988, doi. 10.1002/prot.24358

By:

Stewart, Katie L.;
Nelson, Michael R.;
Eaton, Karen V.;
Anderson, William J.;
Cordes, Matthew H. J.

Publication type:

Article

An evolutionary bridge to a new protein fold.

Published in:

Nature Structural Biology, 2000, v. 7, n. 12, p. 1129

By:

Cordes, Matthew H.J.;
Burton, Randall E.;
Walsh, Nathan P.;
McKnight, C. James;
Sauer, Robert T.

Publication type:

Article

Sexually dimorphic venom proteins in long-jawed orb-weaving spiders (Tetragnatha) comprise novel gene families.

Published in:

PeerJ, 2018, p. 1, doi. 10.7717/peerj.4691

By:

Zobel-Thropp, Pamela A.;
Bulger, Emily A.;
Cordes, Matthew H. J.;
Binford, Greta J.;
Gillespie, Rosemary G.;
Brewer, Michael S.

Publication type:

Article

Extreme divergence between one-to-one orthologs: the structure of N15 Cro bound to operator DNA and its relationship to the λ Cro complex.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 13, p. 7118, doi. 10.1093/nar/gkz507

By:

Hall, Branwen M.;
Roberts, Sue A.;
Cordes, Matthew H.J.

Publication type:

Article

Analysis of the Yeast De Novo Protein YNR034W‐A.

Published in:

FASEB Journal, 2013, v. 27, p. 996.15, doi. 10.1096/fasebj.27.1_supplement.996.15

By:

Shi, Aishan;
Cordes, Matthew

Publication type:

Article

Corrigendum to “Morse boundaries of proper geodesic metric spaces”.

Published in:

2024

By:

Cordes, Matthew;
Sisto, Alessandro;
Zbinden, Stefanie

Publication type:

Correction Notice

Complete topological descriptions of certain Morse boundaries.

Published in:

Groups, Geometry & Dynamics, 2023, v. 17, n. 1, p. 157, doi. 10.4171/GGD/669

By:

Charney, Ruth;
Cordes, Matthew;
Sisto, Alessandro

Publication type:

Article

Phospholipase D Toxins of Brown Spider Venom Convert Lysophosphatidylcholine and Sphingomyelin to Cyclic Phosphates.

Published in:

PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0072372

By:

Lajoie, Daniel M.;
Zobel-Thropp, Pamela A.;
Kumirov, Vlad K.;
Bandarian, Vahe;
Binford, Greta J.;
Cordes, Matthew H. J.

Publication type:

Article

Stability and the Morse boundary.

Published in:

Journal of the London Mathematical Society, 2017, v. 95, n. 3, p. 963, doi. 10.1112/jlms.12042

By:

Cordes, Matthew;
Hume, David

Publication type:

Article

(Non‐)existence of Cannon–Thurston maps for Morse boundaries.

Published in:

Bulletin of the London Mathematical Society, 2025, v. 57, n. 2, p. 463, doi. 10.1112/blms.13207

By:

Charney, Ruth;
Cordes, Matthew;
Goldsborough, Antoine;
Sisto, Alessandro;
Zbinden, Stefanie

Publication type:

Article

Quasi‐Mobius Homeomorphisms of Morse boundaries.

Published in:

Bulletin of the London Mathematical Society, 2019, v. 51, n. 3, p. 501, doi. 10.1112/blms.12246

By:

Charney, Ruth;
Cordes, Matthew;
Murray, Devin

Publication type:

Article

Studying protein fold evolution with hybrids of differently folded homologs.

Published in:

PEDS: Protein Engineering, Design & Selection, 2015, v. 28, n. 8, p. 241, doi. 10.1093/protein/gzv027

By:

Eaton, Karen V.;
Anderson, William J.;
Dubrava, Matthew S.;
Kumirov, Vlad K.;
Dykstra, Emily M.;
Cordes, Matthew H. J.

Publication type:

Article

Evolutionary bridges to new protein folds: design of C-terminal Cro protein chameleon sequences.

Published in:

PEDS: Protein Engineering, Design & Selection, 2011, v. 24, n. 9, p. 765, doi. 10.1093/protein/gzr027

By:

Anderson, William J.;
Van Dorn, Laura O.;
Ingram, Wendy M.;
Cordes, Matthew H. J.

Publication type:

Article

Networking at the Protein Society Symposium.

Published in:

Nature Chemical Biology, 2005, v. 1, n. 5, p. 239, doi. 10.1038/nchembio1005-239

By:

McKnight, C. James;
Cordes, Matthew H. J.

Publication type:

Article

Works matching AU Cordes, Matthew

Structural features and the persistence of acquired proteins.

Measuring <sup>1</sup>H<sup>N</sup> temperature coefficients in invisible protein states by relaxation dispersion NMR spectroscopy.

A simple method for measuring signs of <sup>1</sup>H<sup>N</sup> chemical shift differences between ground and excited protein states.

Cannon–Thurston maps for CAT(0) groups with isolated flats.

Conservation and diversity in the immunity regions of wild phages with the immunity specificity of phage λ.

Regularity of Morse geodesics and growth of stable subgroups.

Evolutionary dynamics of origin and loss in the deep history of phospholipase D toxin genes.

Lateral gene transfer of a dermonecrotic toxin between spiders and bacteria.

The Recent De Novo Origin of Protein C-Termini.

Specificity of Loxosceles α clade phospholipase D enzymes for choline-containing lipids: Role of a conserved aromatic cage.

Protein salvage and repurposing in evolution: Phospholipase D toxins are stabilized by a remodeled scrap of a membrane association domain.

Multistep mutational transformation of a protein fold through structural intermediates.

A polymetamorphic protein.

N15 Cro and λ Cro: Orthologous DNA-binding domains with completely different but equally effective homodimer interfaces.

Molecular Evolution, Functional Variation, and Proposed Nomenclature of the Gene Family That Includes Sphingomyelinase D in Sicariid Spider Venoms.

Boundary Convex Cocompactness and Stability of Subgroups of Finitely Generated Groups.

Random Nilpotent Groups I.

Tolerance of a protein to multiple polar-to-hydrophobic surface substitutions.

Increased sequence hydrophobicity reduces conformational specificity: A mutational case study of the Arc repressor protein.

A role for indels in the evolution of Cro protein folds.

An evolutionary bridge to a new protein fold.

Sexually dimorphic venom proteins in long-jawed orb-weaving spiders (Tetragnatha) comprise novel gene families.

Extreme divergence between one-to-one orthologs: the structure of N15 Cro bound to operator DNA and its relationship to the λ Cro complex.

Analysis of the Yeast De Novo Protein YNR034W‐A.

Corrigendum to “Morse boundaries of proper geodesic metric spaces”.

Complete topological descriptions of certain Morse boundaries.

Phospholipase D Toxins of Brown Spider Venom Convert Lysophosphatidylcholine and Sphingomyelin to Cyclic Phosphates.

Stability and the Morse boundary.

(Non‐)existence of Cannon–Thurston maps for Morse boundaries.

Quasi‐Mobius Homeomorphisms of Morse boundaries.

Studying protein fold evolution with hybrids of differently folded homologs.

Evolutionary bridges to new protein folds: design of C-terminal Cro protein chameleon sequences.

Networking at the Protein Society Symposium.