Works by Cordero, Otto X.

Results: 23

Turnover in Life-Strategies Recapitulates Marine Microbial Succession Colonizing Model Particles.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.812116

By:

Pascual-García, Alberto;
Schwartzman, Julia;
Enke, Tim N.;
Iffland-Stettner, Arion;
Cordero, Otto X.;
Bonhoeffer, Sebastian

Publication type:

Article

Polysaccharide-Bacteria Interactions From the Lens of Evolutionary Ecology.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.705082

By:

Sichert, Andreas;
Cordero, Otto X.

Publication type:

Article

Stress-induced metabolic exchanges between complementary bacterial types underly a dynamic mechanism of inter-species stress resistance.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38913-8

By:

Amarnath, Kapil;
Narla, Avaneesh V.;
Pontrelli, Sammy;
Dong, Jiajia;
Reddan, Jack;
Taylor, Brian R.;
Caglar, Tolga;
Schwartzman, Julia;
Sauer, Uwe;
Cordero, Otto X.;
Hwa, Terence

Publication type:

Article

Explaining microbial genomic diversity in light of evolutionary ecology.

Published in:

Nature Reviews Microbiology, 2014, v. 12, n. 4, p. 263, doi. 10.1038/nrmicro3218

By:

Cordero, Otto X.;
Polz, Martin F.

Publication type:

Article

Microscale ecology regulates particulate organic matter turnover in model marine microbial communities.

Published in:

Nature Communications, 2018, v. 9, p. 1, doi. 10.1038/s41467-018-05159-8

By:

Enke, Tim N.;
Leventhal, Gabriel E.;
Metzger, Matthew;
Saavedra, José T.;
Cordero, Otto X.

Publication type:

Article

Gene-specific selective sweeps in bacteria and archaea caused by negative frequency-dependent selection.

Published in:

BMC Biology, 2015, v. 13, n. 1, p. 1, doi. 10.1186/s12915-015-0131-7

By:

Nobuto Takeuchi;
Cordero, Otto X.;
Koonin, Eugene V.;
Kunihiko Kaneko

Publication type:

Article

Ecology drives a global network of gene exchange connecting the human microbiome.

Published in:

Nature, 2011, v. 480, n. 7376, p. 241, doi. 10.1038/nature10571

By:

Smillie, Chris S.;
Smith, Mark B.;
Friedman, Jonathan;
Cordero, Otto X.;
David, Lawrence A.;
Alm, Eric J.

Publication type:

Article

A particularly useful system to study the ecology of microbes.

Published in:

Environmental Microbiology Reports, 2017, v. 9, n. 1, p. 16, doi. 10.1111/1758-2229.12490

By:

Cordero, Otto X.;
Stocker, Roman

Publication type:

Article

Climate change and Vibrio vulnificus dynamics: A blueprint for infectious diseases.

Published in:

PLoS Pathogens, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.ppat.1012767

By:

Jayakumar, Jane M.;
Martinez-Urtaza, Jaime;
Brumfield, Kyle D.;
Jutla, Antarpreet S.;
Colwell, Rita R.;
Cordero, Otto X.;
Almagro-Moreno, Salvador

Publication type:

Article

Illuminating microbial species‐specific effects on organic matter remineralization in marine sediments.

Published in:

Environmental Microbiology, 2020, v. 22, n. 5, p. 1734, doi. 10.1111/1462-2920.14871

By:

Mahmoudi, Nagissa;
Enke, Tim N.;
Beaupré, Steven R.;
Teske, Andreas P.;
Cordero, Otto X.;
Pearson, Ann

Publication type:

Article

Endemic cyanophages and the puzzle of phage-bacteria coevolution.

Published in:

Environmental Microbiology, 2017, v. 19, n. 2, p. 420, doi. 10.1111/1462-2920.13674

By:

Cordero, Otto X.

Publication type:

Article

Distinct dissolved organic matter sources induce rapid transcriptional responses in coexisting populations of Prochlorococcus, Pelagibacter and the OM60 clade.

Published in:

Environmental Microbiology, 2014, v. 16, n. 9, p. 2815, doi. 10.1111/1462-2920.12254

By:

Sharma, Adrian K.;
Becker, Jamie W.;
Ottesen, Elizabeth A.;
Bryant, Jessica A.;
Duhamel, Solange;
Karl, David M.;
Cordero, Otto X.;
Repeta, Daniel J.;
DeLong, Edward F.

Publication type:

Article

The Consequences of Base Pair Composition Biases for Regulatory Network Organization in Prokaryotes.

Published in:

Molecular Biology & Evolution, 2009, v. 26, n. 10, p. 2171, doi. 10.1093/molbev/msp132

By:

Cordero, Otto X.;
Hogeweg, Paulien

Publication type:

Article

Feed-Forward Loop Circuits as a Side Effect of Genome Evolution.

Published in:

Molecular Biology & Evolution, 2006, v. 23, n. 10, p. 1931, doi. 10.1093/molbev/msl060

By:

Cordero, Otto X.;
Hogeweg, Paulien

Publication type:

Article

Microbial interactions lead to rapid micro-scale successions on model marine particles.

Published in:

Nature Communications, 2016, v. 7, n. 6, p. 11965, doi. 10.1038/ncomms11965

By:

Datta, Manoshi S.;
Sliwerska, Elzbieta;
Gore, Jeff;
Polz, Martin F.;
Cordero, Otto X.

Publication type:

Article

Stochasticity constrained by deterministic effects of diet and age drive rumen microbiome assembly dynamics.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-15652-8

By:

Furman, Ori;
Shenhav, Liat;
Sasson, Goor;
Kokou, Fotini;
Honig, Hen;
Jacoby, Shamay;
Hertz, Tomer;
Cordero, Otto X.;
Halperin, Eran;
Mizrahi, Itzhak

Publication type:

Article

Context-dependent dynamics lead to the assembly of functionally distinct microbial communities.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-15169-0

By:

Bittleston, Leonora S.;
Gralka, Matti;
Leventhal, Gabriel E.;
Mizrahi, Itzhak;
Cordero, Otto X.

Publication type:

Article

Mutation-induced infections of phage-plasmids.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37512-x

By:

Shan, Xiaoyu;
Szabo, Rachel E.;
Cordero, Otto X.

Publication type:

Article

Microbes contribute to setting the ocean carbon flux by altering the fate of sinking particulates.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29297-2

By:

Nguyen, Trang T. H.;
Zakem, Emily J.;
Ebrahimi, Ali;
Schwartzman, Julia;
Caglar, Tolga;
Amarnath, Kapil;
Alcolombri, Uria;
Peaudecerf, François J.;
Hwa, Terence;
Stocker, Roman;
Cordero, Otto X.;
Levine, Naomi M.

Publication type:

Article

Microbes contribute to setting the ocean carbon flux by altering the fate of sinking particulates.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29297-2

By:

Nguyen, Trang T. H.;
Zakem, Emily J.;
Ebrahimi, Ali;
Schwartzman, Julia;
Caglar, Tolga;
Amarnath, Kapil;
Alcolombri, Uria;
Peaudecerf, François J.;
Hwa, Terence;
Stocker, Roman;
Cordero, Otto X.;
Levine, Naomi M.

Publication type:

Article

A genomic comparison of 13 symbiotic Vibrio fischeri isolates from the perspective of their host source and colonization behavior.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 12, p. 2907, doi. 10.1038/ismej.2016.69

By:

Bongrand, Clotilde;
Koch, Eric J;
Moriano-Gutierrez, Silvia;
Cordero, Otto X;
McFall-Ngai, Margaret;
Polz, Martin F;
Ruby, Edward G

Publication type:

Article

Challenges in microbial ecology: building predictive understanding of community function and dynamics.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 11, p. 2557, doi. 10.1038/ismej.2016.45

By:

Widder, Stefanie;
Allen, Rosalind J;
Pfeiffer, Thomas;
Curtis, Thomas P;
Wiuf, Carsten;
Sloan, William T;
Cordero, Otto X;
Brown, Sam P;
Momeni, Babak;
Shou, Wenying;
Kettle, Helen;
Flint, Harry J;
Haas, Andreas F;
Laroche, Béatrice;
Kreft, Jan-Ulrich;
Rainey, Paul B;
Freilich, Shiri;
Schuster, Stefan;
Milferstedt, Kim;
van der Meer, Jan R

Publication type:

Article

Linear-regression-based algorithms can succeed at identifying microbial functional groups despite the nonlinearity of ecological function.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 11, p. 1, doi. 10.1371/journal.pcbi.1012590

By:

Zhao, Yuanchen;
Cordero, Otto X.;
Tikhonov, Mikhail

Publication type:

Article