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Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.
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- Bioinformatics, 2005, v. 21, n. 18, p. 3674, doi. 10.1093/bioinformatics/bti610
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- Article
Palmitate impairs circadian transcriptomics in muscle cells through histone modification of enhancers.
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- Life Science Alliance, 2023, v. 6, n. 1, p. 1, doi. 10.26508/lsa.202201598
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- Article
Association Between Sex Hormone Levels and Clinical Outcomes in Patients With COVID-19 Admitted to Hospital: An Observational, Retrospective, Cohort Study.
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- Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.834851
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- Article
Lycopene overproduction and in situ extraction in organic-aqueous culture systems using a metabolically engineered Escherichia coli.
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- AMB Express, 2015, v. 5, n. 1, p. 1, doi. 10.1186/s13568-015-0150-3
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Characterization of CobB kinetics and inhibition by nicotinamide.
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- PLoS ONE, 2017, v. 12, n. 12, p. 1, doi. 10.1371/journal.pone.0189689
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Understanding disease mechanisms with models of signaling pathway activities.
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- BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0121-3
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- Article
STATegra EMS: an Experiment Management System for complex next-generation omics experiments.
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- BMC Systems Biology, 2014, v. 8, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-8-S2-S9
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- Article
Pathway network inference from gene expression data.
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- BMC Systems Biology, 2014, v. 8, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-8-S2-S7
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The common ground of genomics and systems biology.
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- BMC Systems Biology, 2014, v. 8, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-8-S2-S1
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- Article
Data integration in the era of omics: current and future challenges.
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- BMC Systems Biology, 2014, v. 8, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-8-S2-I1
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- Article
RNAseq analysis of Aspergillus fumigatus in blood reveals a just wait and see resting stage behavior.
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- BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1853-1
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Comparative transcriptomics reveals striking similarities between the bovine and feline isolates of Tritrichomonas foetus: consequences for in silico drug-target identification.
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- BMC Genomics, 2014, v. 15, n. 1, p. 955, doi. 10.1186/1471-2164-15-955
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- Article
Relationship between genome and epigenome - challenges and requirements for future research.
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- BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-487
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- Article
Identification of yeast genes that confer resistance to chitosan oligosaccharide (COS) using chemogenomics.
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- BMC Genomics, 2012, v. 13, n. 1, p. 267, doi. 10.1186/1471-2164-13-267
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- Article
Profiling the venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing.
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- BMC Genomics, 2011, v. 12, n. 1, p. 259, doi. 10.1186/1471-2164-12-259
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- Article
A multi-omic study for uncovering molecular mechanisms associated with hyperammonemia-induced cerebellar function impairment in rats.
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- Cell Biology & Toxicology, 2021, v. 37, n. 1, p. 129, doi. 10.1007/s10565-020-09572-y
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- Article
Histone modifications and expression of DAM6 gene in peach are modulated during bud dormancy release in a cultivar-dependent manner.
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- New Phytologist, 2012, v. 193, n. 1, p. 67, doi. 10.1111/j.1469-8137.2011.03863.x
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- Article
Large-scale transcriptional profiling and functional assays reveal important roles for Rho-GTPase signalling and SCL during haematopoietic differentiation of human embryonic stem cells.
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- Human Molecular Genetics, 2011, v. 20, n. 24, p. 4932, doi. 10.1093/hmg/ddr431
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- Article
Nucleotide-level distance metrics to quantify alternative splicing implemented in TranD.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. e28, doi. 10.1093/nar/gkae056
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- Article
Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures.
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- Nature Communications, 2014, v. 5, n. 9, p. 5125, doi. 10.1038/ncomms6125
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- Article
Methylome profiling reveals functions and genes which are differentially methylated in serrated compared to conventional colorectal carcinoma.
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- Clinical Epigenetics, 2015, v. 7, n. 1, p. 1, doi. 10.1186/s13148-015-0128-7
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- Article
Integrative analyses of TEDDY Omics data reveal lipid metabolism abnormalities, increased intracellular ROS and heightened inflammation prior to autoimmunity for type 1 diabetes.
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- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02262-w
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tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing.
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- Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02028-w
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Evidence of the Red-Queen Hypothesis from Accelerated Rates of Evolution of Genes Involved in Biotic Interactions in Pneumocystis.
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- Genome Biology & Evolution, 2018, v. 10, n. 6, p. 1596, doi. 10.1093/gbe/evy116
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- Article
Sequencing and analysis of gerbera daisy leaf transcriptomes reveal disease resistance and susceptibility genes differentially expressed and associated with powdery mildew resistance.
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- BMC Plant Biology, 2020, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12870-020-02742-4
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- Article
Large-scale Gene Ontology analysis of plant transcriptome-derived sequences retrieved by AFLP technology.
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- BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-347
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- Article
ARSyN: a method for the identification and removal of systematic noise in multifactorial time course microarray experiments.
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- Biostatistics, 2012, v. 13, n. 3, p. 553, doi. 10.1093/biostatistics/kxr042
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- Article
Variation in leaf transcriptome responses to elevated ozone corresponds with physiological sensitivity to ozone across maize inbred lines.
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- Genetics, 2022, v. 221, n. 4, p. 1, doi. 10.1093/genetics/iyac080
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- Article
Microarray analysis of Etrog citron ( Citrus medica L.) reveals changes in chloroplast, cell wall, peroxidase and symporter activities in response to viroid infection.
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- Molecular Plant Pathology, 2012, v. 13, n. 8, p. 852, doi. 10.1111/j.1364-3703.2012.00794.x
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- Article
An acetylatable lysine controls CRP function in E. coli.
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- Molecular Microbiology, 2018, v. 107, n. 1, p. 116, doi. 10.1111/mmi.13874
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- Article
Event Analysis: Using Transcript Events To Improve Estimates of Abundance in RNA-seq Data.
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- G3: Genes | Genomes | Genetics, 2018, v. 8, n. 9, p. 2923, doi. 10.1534/g3.118.200373
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- Article
Transcriptional Differences for COVID-19 Disease Map Genes between Males and Females Indicate a Different Basal Immunophenotype Relevant to the Disease.
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- Genes, 2020, v. 11, n. 12, p. 1447, doi. 10.3390/genes11121447
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roadmap for the functional annotation of protein families: a community perspective.
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- Database: The Journal of Biological Databases & Curation, 2022, v. 2022, p. 1, doi. 10.1093/database/baac062
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- Article
RGmatch: matching genomic regions to proximal genes in omics data integration.
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- BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1293-1
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Separating common from distinctive variation.
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- BMC Bioinformatics, 2016, v. 17, p. 271, doi. 10.1186/s12859-016-1037-2
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Initial Genomics of the Human Nucleolus.
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- PLoS Genetics, 2010, v. 6, n. 3, p. 1, doi. 10.1371/journal.pgen.1000889
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- Article
Changes in the uterine metabolome of the cow during the first 7 days after estrus.
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- Molecular Reproduction & Development, 2019, v. 86, n. 1, p. 75, doi. 10.1002/mrd.23082
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- Article
A multi-omics dataset of heat-shock response in the yeast RNA binding protein Mip6.
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- Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0412-z
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- Article
Making multi-omics data accessible to researchers.
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- Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0258-4
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- Article
A benchmarking of workflows for detecting differential splicing and differential expression at isoform level in human RNA-seq studies.
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- Briefings in Bioinformatics, 2019, v. 20, n. 2, p. 471, doi. 10.1093/bib/bbx122
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- Article
STATegra: Multi-Omics Data Integration – A Conceptual Scheme With a Bioinformatics Pipeline.
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- Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.620453
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- Article
Overexpression of the vascular brassinosteroid receptor BRL3 confers drought resistance without penalizing plant growth.
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- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06861-3
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- Article
Two histologically colorectal carcinomas subsets from the serrated pathway show different methylome signatures and diagnostic biomarkers.
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- Clinical Epigenetics, 2018, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13148-018-0571-3
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- Article
Intervenciones de enfermería psicoeducativas presenciales y online, para el manejo de la ansiedad: revisión integradora de la literatura.
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- Enfermería Global, 2022, v. 21, n. 4, p. 531, doi. 10.6018/eglobal.503401
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- Article
Functional assessment of time course microarray data.
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- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S6-S9
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- Article
scMaSigPro: differential expression analysis along single-cell trajectories.
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- Bioinformatics, 2024, v. 40, n. 7, p. 1, doi. 10.1093/bioinformatics/btae443
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- Article
ECCB2022: the 21st European Conference on Computational Biology.
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- Bioinformatics, 2022, v. 38, p. ii1, doi. 10.1093/bioinformatics/btac560
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- Article
MultiBaC: an R package to remove batch effects in multi-omic experiments.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2657, doi. 10.1093/bioinformatics/btac132
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- Article
MirCure: a tool for quality control, filter and curation of microRNAs of animals and plants.
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- Bioinformatics, 2020, v. 36, p. i618, doi. 10.1093/bioinformatics/btaa889
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Padhoc: a computational pipeline for pathway reconstruction on the fly.
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- Bioinformatics, 2020, v. 36, p. i795, doi. 10.1093/bioinformatics/btaa811
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- Article