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Host Genetic Analysis Should Be Mandatory for Proper Classification of COVID-19 Reinfections.
- Published in:
- Open Forum Infectious Diseases, 2021, v. 8, n. 9, p. 1, doi. 10.1093/ofid/ofab402
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- Publication type:
- Article
In-Depth Characterization and Functional Analysis of Clonal Variants in a Mycobacterium tuberculosis Strain Prone to Microevolution.
- Published in:
- Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00694
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- Publication type:
- Article
Systematic Genomic and Clinical Analysis of Severe Acute Respiratory Syndrome Coronavirus 2 Reinfections and Recurrences Involving the Same Strain.
- Published in:
- Emerging Infectious Diseases, 2022, v. 28, n. 1, p. 85, doi. 10.3201/eid2801.211952
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- Publication type:
- Article
Simplified Model to Survey Tuberculosis Transmission in Countries Without Systematic Molecular Epidemiology Programs.
- Published in:
- 2019
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- Publication type:
- journal article
Novel Mycobacterium tuberculosis Complex Isolate from a Wild Chimpanzee.
- Published in:
- Emerging Infectious Diseases, 2013, v. 19, n. 6, p. 969, doi. 10.3201/eid1906.121012
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- Publication type:
- Article
Mycobacterial Lineages Causing Pulmonary and Extrapulmonary Tuberculosis, Ethiopia.
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- Emerging Infectious Diseases, 2013, v. 19, n. 3, p. 460, doi. 10.3201/eid1903.120256
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- Publication type:
- Article
Whole genome sequencing-based analysis of tuberculosis (TB) in migrants: rapid tools for cross-border surveillance and to distinguish between recent transmission in the host country and new importations.
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- Eurosurveillance (15607917), 2019, v. 24, n. 4, p. 19, doi. 10.2807/1560-7917.ES.2019.24.4.1800005
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- Publication type:
- Article
Contaminant DNA in bacterial sequencing experiments is a major source of false genetic variability.
- Published in:
- BMC Biology, 2020, v. 18, n. 1, p. 1, doi. 10.1186/s12915-020-0748-z
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- Publication type:
- Article
Cumulative incidence of SARS‐CoV‐2 infection in the general population of the Valencian Community (Spain) after the surge of the Omicron BA.1 variant.
- Published in:
- Journal of Medical Virology, 2023, v. 95, n. 1, p. 1, doi. 10.1002/jmv.28284
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- Publication type:
- Article
An evolutionary functional genomics approach identifies novel candidate regions involved in isoniazid resistance in Mycobacterium tuberculosis.
- Published in:
- Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02846-z
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- Publication type:
- Article
Genomic analyses of Mycobacterium tuberculosis from human lung resections reveal a high frequency of polyclonal infections.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22705-z
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- Publication type:
- Article
Overlapping prison/community tuberculosis outbreaks in Costa Rica revealed by alternative analysis of suboptimal material.
- Published in:
- Transboundary & Emerging Diseases, 2022, v. 69, n. 3, p. 1065, doi. 10.1111/tbed.14063
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- Publication type:
- Article
Recurrences of multidrug‐resistant tuberculosis: Strains involved, within‐host diversity, and fine‐tuned allocation of reinfections.
- Published in:
- Transboundary & Emerging Diseases, 2022, v. 69, n. 2, p. 327, doi. 10.1111/tbed.13982
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- Publication type:
- Article
Recombination drives genome evolution in outbreak-related Legionella pneumophila isolates.
- Published in:
- Nature Genetics, 2014, v. 46, n. 11, p. 1205, doi. 10.1038/ng.3114
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- Publication type:
- Article
Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans.
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- Nature Genetics, 2013, v. 45, n. 10, p. 1176, doi. 10.1038/ng.2744
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- Publication type:
- Article
Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes.
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- Nature Genetics, 2012, v. 44, n. 1, p. 106, doi. 10.1038/ng.1038
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- Publication type:
- Article
Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved.
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- Nature Genetics, 2010, v. 42, n. 6, p. 498, doi. 10.1038/ng.590
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- Publication type:
- Article
The Troika Host--Pathogen--Extrinsic Factors in Tuberculosis: Modulating Inflammation and Clinical Outcomes.
- Published in:
- Frontiers in Immunology, 2018, p. 1, doi. 10.3389/fimmu.2017.01948
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- Publication type:
- Article
Evaluation of Customised Lineage-Specific Sets of MIRU-VNTR Loci for Genotyping <i>Mycobacterium tuberculosis</i> Complex Isolates in Ghana.
- Published in:
- PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0092675
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- Publication type:
- Article
Two New Rapid SNP-Typing Methods for Classifying Mycobacterium tuberculosis Complex into the Main Phylogenetic Lineages.
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- PLoS ONE, 2012, v. 7, n. 7, p. 1, doi. 10.1371/journal.pone.0041253
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- Publication type:
- Article
Whole Genome Sequencing Analysis of Intrapatient Microevolution in Mycobacterium tuberculosis: Potential Impact on the Inference of Tuberculosis Transmission.
- Published in:
- 2014
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- Publication type:
- Journal Article
Whole Genome Sequencing Analysis of Intrapatient Microevolution in Mycobacterium tuberculosis: Potential Impact on the Inference of Tuberculosis Transmission.
- Published in:
- Journal of Infectious Diseases, 2014, v. 209, n. 1, p. 98, doi. 10.1093/infdis/jit439
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- Publication type:
- Article
Genomic analysis of Mycobacterium brumae sustains its nonpathogenic and immunogenic phenotype.
- Published in:
- Frontiers in Microbiology, 2023, v. 13, p. 1, doi. 10.3389/fmicb.2022.982679
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- Publication type:
- Article
Influence of Gut Microbiota on Progression to Tuberculosis Generated by High Fat Diet-Induced Obesity in C3HeB/FeJ Mice.
- Published in:
- Frontiers in Immunology, 2019, p. 1, doi. 10.3389/fimmu.2019.02464
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- Publication type:
- Article
Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complex.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11948-6
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- Publication type:
- Article
Evidence for Diversifying Selection in a Set of Mycobacterium tuberculosis Genes in Response to Antibiotic- and Nonantibiotic-Related Pressure.
- Published in:
- Molecular Biology & Evolution, 2013, v. 30, n. 6, p. 1326, doi. 10.1093/molbev/mst038
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- Publication type:
- Article
Author Correction: Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase.
- Published in:
- 2020
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- Publication type:
- Correction Notice
Screening of inmates transferred to Spain reveals a Peruvian prison as a reservoir of persistent Mycobacterium tuberculosis MDR strains and mixed infections.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-59373-w
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- Publication type:
- Article
Development and application of affordable SNP typing approaches to genotype Mycobacterium tuberculosis complex strains in low and high burden countries.
- Published in:
- Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-51326-2
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- Publication type:
- Article
The mineralocorticoid receptor modulates timing and location of genomic binding by glucocorticoid receptor in response to synthetic glucocorticoids in keratinocytes.
- Published in:
- FASEB Journal, 2023, v. 37, n. 1, p. 1, doi. 10.1096/fj.202201199RR
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- Publication type:
- Article
Evolutionary Dissection of the Dot/Icm System Based on Comparative Genomics of 58 Legionella Species.
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- Genome Biology & Evolution, 2019, v. 11, n. 9, p. 2619, doi. 10.1093/gbe/evz186
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- Publication type:
- Article
Mapping of Genotype–Phenotype Diversity among Clinical Isolates of Mycobacterium tuberculosis by Sequence-Based Transcriptional Profiling.
- Published in:
- Genome Biology & Evolution, 2013, v. 5, n. 10, p. 1849, doi. 10.1093/gbe/evt138
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- Publication type:
- Article
Severe Acute Respiratory Syndrome Coronavirus 2 Adaptive Immunity in Nursing Home Residents Following a Third Dose of the Comirnaty Coronavirus Disease 2019 Vaccine.
- Published in:
- Clinical Infectious Diseases, 2022, v. 75, n. 1, p. e865, doi. 10.1093/cid/ciac223
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- Publication type:
- Article
Sequence-Based Analysis Uncovers an Abundance of Non-Coding RNA in the Total Transcriptome of Mycobacterium tuberculosis.
- Published in:
- PLoS Pathogens, 2011, v. 7, n. 11, p. 1, doi. 10.1371/journal.ppat.1002342
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- Publication type:
- Article
Human Macrophage Responses to Clinical Isolates from the Mycobacterium tuberculosis Complex Discriminate between Ancient and Modern Lineages.
- Published in:
- PLoS Pathogens, 2011, v. 7, n. 3, p. 1, doi. 10.1371/journal.ppat.1001307
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- Publication type:
- Article
Evolutionary Trajectories of Beta-Lactamase CTX-M-1 Cluster Enzymes: Predicting Antibiotic Resistance.
- Published in:
- PLoS Pathogens, 2010, v. 6, n. 1, p. 1, doi. 10.1371/journal.ppat.1000735
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- Publication type:
- Article
The Past and Future of Tuberculosis Research.
- Published in:
- PLoS Pathogens, 2009, v. 5, n. 10, p. 1, doi. 10.1371/journal.ppat.1000600
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- Publication type:
- Article
Quantifying Nonvertical Inheritance in the Evolution of Legionella pneumophila.
- Published in:
- Molecular Biology & Evolution, 2011, v. 28, n. 2, p. 985, doi. 10.1093/molbev/msq278
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- Publication type:
- Article
Evolution of Snake Venom Disintegrins by Positive Darwinian Selection.
- Published in:
- Molecular Biology & Evolution, 2008, v. 25, n. 11, p. 2391, doi. 10.1093/molbev/msn179
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- Publication type:
- Article
The Evolutionary Origin of Xanthomonadales Genomes and the Nature of the Horizontal Gene Transfer Process.
- Published in:
- Molecular Biology & Evolution, 2006, v. 23, n. 11, p. 2049, doi. 10.1093/molbev/msl075
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- Publication type:
- Article
Horizontal Gene Transfer in the Molecular Evolution of Mannose PTS Transporters.
- Published in:
- Molecular Biology & Evolution, 2005, v. 22, n. 8, p. 1673, doi. 10.1093/molbev/msi163
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- Publication type:
- Article
Whole genomic sequencing based genotyping reveals a specific X3 sublineage restricted to Mexico and related with multidrug resistance.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-020-80919-5
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- Publication type:
- Article
Glucocorticoid-dependent transcription in skin requires epidermal expression of the glucocorticoid receptor and is modulated by the mineralocorticoid receptor.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-75853-5
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- Publication type:
- Article
Mycobacterium tuberculosis Acquires Limited Genetic Diversity in Prolonged Infections, Reactivations and Transmissions Involving Multiple Hosts.
- Published in:
- Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2017.02661
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- Publication type:
- Article
Monitoring of First-line Drug Resistance Mutations Outside the Scope of Xpert MTB/RIF Ultra is Needed for Successful Control of DR-TB in Southern Mozambique.
- Published in:
- Clinical Infectious Diseases, 2024, v. 78, n. 4, p. 842, doi. 10.1093/cid/ciad684
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- Publication type:
- Article
From Phylogenetics to Phylogenomics: The Evolutionary Relationships of Insect Endosymbiotic γ-Proteobacteria as a Test Case.
- Published in:
- Systematic Biology, 2007, v. 56, n. 1, p. 1, doi. 10.1080/10635150601109759
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- Publication type:
- Article
Different Within-Host Viral Evolution Dynamics in Severely Immunosuppressed Cases with Persistent SARS-CoV-2.
- Published in:
- Biomedicines, 2021, v. 9, n. 7, p. 808, doi. 10.3390/biomedicines9070808
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- Publication type:
- Article
Heterogeneous Streptomycin Resistance Level Among Mycobacterium tuberculosis Strains From the Same Transmission Cluster.
- Published in:
- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.659545
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- Publication type:
- Article
The Genome of Mycobacterium Africanum West African 2 Reveals a Lineage-Specific Locus and Genome Erosion Common to the M. tuberculosis Complex.
- Published in:
- PLoS Neglected Tropical Diseases, 2012, v. 6, n. 2, p. 1, doi. 10.1371/journal.pntd.0001552
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- Publication type:
- Article
The Genome of Mycobacterium Africanum West African 2 Reveals a Lineage-Specific Locus and Genome Erosion Common to the M. tuberculosis Complex.
- Published in:
- PLoS Neglected Tropical Diseases, 2012, v. 6, n. 2, p. 1, doi. 10.1371/journal.pntd.0001552
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- Publication type:
- Article