Works matching AU Colquhoun, Rachel

Results: 9

SCORPIO: a utility for defining and classifying mutation constellations of virus genomes.

Published in:

Bioinformatics, 2023, v. 39, n. 10, p. 1, doi. 10.1093/bioinformatics/btad575

By:

Colquhoun, Rachel;
Jackson, Ben;
O'Toole, Áine;
Rambaut, Andrew

Publication type:

Article

Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes.

Published in:

Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02714-x

By:

Hunt, Martin;
Letcher, Brice;
Malone, Kerri M.;
Nguyen, Giang;
Hall, Michael B.;
Colquhoun, Rachel M.;
Lima, Leandro;
Schatz, Michael C.;
Ramakrishnan, Srividya;
Iqbal, Zamin

Publication type:

Article

Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs.

Published in:

Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02473-1

By:

Colquhoun, Rachel M.;
Hall, Michael B.;
Lima, Leandro;
Roberts, Leah W.;
Malone, Kerri M.;
Hunt, Martin;
Letcher, Brice;
Hawkey, Jane;
George, Sophie;
Pankhurst, Louise;
Iqbal, Zamin

Publication type:

Article

CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance.

Published in:

2021

By:

Nicholls, Samuel M.;
Poplawski, Radoslaw;
Bull, Matthew J.;
Underwood, Anthony;
Chapman, Michael;
Abu-Dahab, Khalil;
Taylor, Ben;
Colquhoun, Rachel M.;
Rowe, Will P. M.;
Jackson, Ben;
Hill, Verity;
O'Toole, Áine;
Rey, Sara;
Southgate, Joel;
Amato, Roberto;
Livett, Rich;
Gonçalves, Sónia;
Harrison, Ewan M.;
Peacock, Sharon J.;
Aanensen, David M.

Publication type:

Editorial

A phylogenetics and variant calling pipeline to support SARS-CoV-2 genomic epidemiology in the UK.

Published in:

Virus Evolution, 2024, v. 10, n. 1, p. 1, doi. 10.1093/ve/veae083

By:

Colquhoun, Rachel;
O'Toole, Áine;
Hill, Verity;
McCrone, J T;
Yu, Xiaoyu;
Nicholls, Samuel M;
Poplawski, Radoslaw;
Whalley, Thomas;
Groves, Natalie;
Ellaby, Nicholas;
Loman, Nick;
Connor, Tom;
Rambaut, Andrew

Publication type:

Article

Automated detection and classification of polioviruses from nanopore sequencing reads using piranha.

Published in:

Virus Evolution, 2024, v. 10, n. 1, p. 1, doi. 10.1093/ve/veae023

By:

O'Toole, Áine;
Colquhoun, Rachel;
Ansley, Corey;
Troman, Catherine;
Maloney, Daniel;
Vance, Zoe;
Akello, Joyce;
Bujaki, Erika;
Majumdar, Manasi;
Khurshid, Adnan;
Arshad, Yasir;
Alam, Muhammad Masroor;
Martin, Javier;
Shaw, Alexander G;
Grassly, Nicholas C;
Rambaut, Andrew

Publication type:

Article

The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac080

By:

Hill, Verity;
Plessis, Louis Du;
Peacock, Thomas P;
Aggarwal, Dinesh;
Colquhoun, Rachel;
Carabelli, Alesandro M;
Ellaby, Nicholas;
Gallagher, Eileen;
Groves, Natalie;
Jackson, Ben;
McCrone, J T;
O'Toole, Áine;
Price, Anna;
Sanderson, Theo;
Scher, Emily;
Southgate, Joel;
Volz, Erik;
Barclay, Wendy S;
Barrett, Jeffrey C;
Chand, Meera

Publication type:

Article

Tracking SARS-CoV-2 mutations and variants through the COG-UK-Mutation Explorer.

Published in:

Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac023

By:

Wright, Derek W;
Harvey, William T;
Hughes, Joseph;
Cox, MacGregor;
Peacock, Thomas P;
Colquhoun, Rachel;
Jackson, Ben;
Orton, Richard;
Nielsen, Morten;
Hsu, Nienyun Sharon;
consortium, The COVID-19 Genomics UK (COG-UK);
Harrison, Ewan M;
Silva, Thushan I de;
Rambaut, Andrew;
Peacock, Sharon J;
Robertson, David L;
Carabelli, Alessandro M

Publication type:

Article

Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool.

Published in:

Virus Evolution, 2021, v. 7, n. 2, p. 1, doi. 10.1093/ve/veab064

By:

O'Toole, Áine;
Scher, Emily;
Underwood, Anthony;
Jackson, Ben;
Hill, Verity;
McCrone, John T;
Colquhoun, Rachel;
Ruis, Chris;
Abu-Dahab, Khalil;
Taylor, Ben;
Yeats, Corin;
Plessis, Louis du;
Maloney, Daniel;
Medd, Nathan;
Attwood, Stephen W;
Aanensen, David M;
Holmes, Edward C;
Pybus, Oliver G;
Rambaut, Andrew

Publication type:

Article