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Sex affects transcriptional associations with schizophrenia across the dorsolateral prefrontal cortex, hippocampus, and caudate nucleus.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-48048-z
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- Article
The gene expression landscape of the human locus coeruleus revealed by single-nucleus and spatially-resolved transcriptomics.
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- eLife, 2024, p. 1, doi. 10.7554/eLife.84628
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- Article
TrkB-dependent regulation of molecular signaling across septal cell types.
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- Translational Psychiatry, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41398-024-02758-6
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- Article
Challenges and opportunities to computationally deconvolve heterogeneous tissue with varying cell sizes using single-cell RNA-sequencing datasets.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-03123-4
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- Article
Data-driven identification of total RNA expression genes for estimation of RNA abundance in heterogeneous cell types highlighted in brain tissue.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-03066-w
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- Article
Influence of Alzheimer's Disease Related Neuropathology on Local Microenvironment Gene Expression in the Human Inferior Temporal Cortex.
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- GEN Biotechnology, 2023, v. 2, n. 5, p. 399, doi. 10.1089/genbio.2023.0019
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- Article
BiocMAP: a Bioconductor-friendly, GPU-accelerated pipeline for bisulfite-sequencing data.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05461-3
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- Article
Activity‐regulated gene expression across cell types of the mouse hippocampus.
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- Hippocampus, 2023, v. 33, n. 9, p. 1009, doi. 10.1002/hipo.23548
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- Article
escheR: unified multi-dimensional visualizations with Gestalt principles.
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- Bioinformatics Advances, 2023, v. 3, n. 1, p. 1, doi. 10.1093/bioadv/vbad179
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- Article
IntroVerse: a comprehensive database of introns across human tissues.
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- Nucleic Acids Research, 2023, v. 51, n. D1, p. D167, doi. 10.1093/nar/gkac1056
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- Article
Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments.
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- Biological Imaging, 2023, v. 3, p. 1, doi. 10.1017/S2633903X2300017X
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- Article
VistoSeg: Processing utilities for high-resolution images for spatially resolved transcriptomics data.
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- Biological Imaging, 2023, v. 3, p. 1, doi. 10.1017/S2633903X23000235
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- Publication type:
- Article
spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data.
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- BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08601-w
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- Article
SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3128, doi. 10.1093/bioinformatics/btac299
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- Article
recount3: summaries and queries for large-scale RNA-seq expression and splicing.
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- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02533-6
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- Article
Megadepth: efficient coverage quantification for BigWigs and BAMs.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3014, doi. 10.1093/bioinformatics/btab152
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- Article
Genome-wide sequencing-based identification of methylation quantitative trait loci and their role in schizophrenia risk.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25517-3
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- Article
Correction to: SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor‑powered RNA‑seq analyses.
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- 2021
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- Correction Notice
SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor‑powered RNA‑seq analyses.
- Published in:
- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04283-5
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- Article
Programmatic access to bacterial regulatory networks with regutools.
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- Bioinformatics, 2020, v. 36, n. 16, p. 4532, doi. 10.1093/bioinformatics/btaa575
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- Article
Regulatory sites for splicing in human basal ganglia are enriched for disease-relevant information.
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- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-14483-x
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- Article
Dissecting transcriptomic signatures of neuronal differentiation and maturation using iPSCs.
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- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-019-14266-z
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- Article
Divergent neuronal DNA methylation patterns across human cortical development reveal critical periods and a unique role of CpH methylation.
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- Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1805-1
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- Article
Integrated Transcriptomic and Proteomic Analysis of Primary Human Umbilical Vein Endothelial Cells.
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- Proteomics, 2019, v. 19, n. 15, p. N.PAG, doi. 10.1002/pmic.201800315
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- Article
Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods.
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- BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-5870-3
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- Article
Integrated DNA methylation and gene expression profiling across multiple brain regions implicate novel genes in Alzheimer's disease.
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- Acta Neuropathologica, 2019, v. 137, n. 4, p. 557, doi. 10.1007/s00401-019-01966-5
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- Article
Non-coding Class Switch Recombination-Related Transcription in Human Normal and Pathological Immune Responses.
- Published in:
- Frontiers in Immunology, 2018, p. N.PAG, doi. 10.3389/fimmu.2018.02679
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- Article
Improving the value of public RNA-seq expression data by phenotype prediction.
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- Nucleic Acids Research, 2018, v. 46, n. 9, p. 1, doi. 10.1093/nar/gky102
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- Article
Rail-RNA: scalable analysis of RNA-seq splicing and coverage.
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- Bioinformatics, 2017, v. 33, n. 24, p. 4033, doi. 10.1093/bioinformatics/btw575
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- Article
Reproducible RNA-seq analysis using recount2.
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- Nature Biotechnology, 2017, v. 35, n. 4, p. 319, doi. 10.1038/nbt.3838
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- Article
Flexible expressed region analysis for RNA-seq with derfinder.
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- Nucleic Acids Research, 2017, v. 45, n. 2, p. 1, doi. 10.1093/nar/gkw852
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- Article
Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive.
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- Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-1118-6
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- Article
Developmental regulation of human cortex transcription and its clinical relevance at single base resolution.
- Published in:
- Nature Neuroscience, 2015, v. 18, n. 1, p. 154, doi. 10.1038/nn.3898
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- Article