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High-quality genome and methylomes illustrate features underlying evolutionary success of oaks.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29584-y
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- Article
Tissue-Specific Transcriptomes Reveal Gene Expression Trajectories in Two Maturing Skin Epithelial Layers in Zebrafish Embryos.
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- G3: Genes | Genomes | Genetics, 2019, v. 9, n. 10, p. 3439, doi. 10.1534/g3.119.400402
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- Article
Genome and methylome of the oleaginous diatom Cyclotella cryptica reveal genetic flexibility toward a high lipid phenotype.
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- Biotechnology for Biofuels, 2016, v. 9, p. 1, doi. 10.1186/s13068-016-0670-3
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- Article
A naïve Bayesian classifier for identifying plant micro RNAs.
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- Plant Journal, 2016, v. 86, n. 6, p. 481, doi. 10.1111/tpj.13180
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- Article
MTHFD1 controls DNA methylation in Arabidopsis.
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- Nature Communications, 2016, v. 7, n. 6, p. 11640, doi. 10.1038/ncomms11640
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- Article
Association of transcriptome-wide sequence variation with climate gradients in valley oak ( Quercus lobata).
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- Tree Genetics & Genomes, 2016, v. 12, n. 2, p. 1, doi. 10.1007/s11295-016-0975-1
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- Article
Evolutionary insights from de novo transcriptome assembly and SNP discovery in California white oaks.
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- BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1761-4
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- Article
Evolutionary insights from de novo transcriptome assembly and SNP discovery in California white oaks.
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- BMC Genomics, 2015, v. 16, n. 1, p. 552, doi. 10.1186/s12864-015-1761-4
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- Article
BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data.
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-774
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- Article
Systems Biology Approach in Chlamydomonas Reveals Connections between Copper Nutrition and Multiple Metabolic Steps.
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- Plant Cell, 2011, v. 23, n. 4, p. 1273, doi. 10.1105/tpc.111.084400
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- Article
Algal Functional Annotation Tool: a web-based analysis suite to functionally interpret large gene lists using integrated annotation and expression data.
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- BMC Bioinformatics, 2011, v. 12, n. 1, p. 282, doi. 10.1186/1471-2105-12-282
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- Article
Relationship between nucleosome positioning and DNA methylation.
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- Nature, 2010, v. 466, n. 7304, p. 388, doi. 10.1038/nature09147
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- Article
RNA-Seq Analysis of Sulfur-Deprived Chlamydomonas Cells Reveals Aspects of Acclimation Critical for Cell Survival.
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- Plant Cell, 2010, v. 22, n. 6, p. 2058, doi. 10.1105/tpc.109.071167
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- Article
Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency.
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- Nature, 2010, v. 463, n. 7284, p. 1101, doi. 10.1038/nature08829
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- Article
BS Seeker: precise mapping for bisulfite sequencing.
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- BMC Bioinformatics, 2010, v. 11, p. 203, doi. 10.1186/1471-2105-11-203
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- Article
Copy number variation influences gene expression and metabolic traits in mice.
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- Human Molecular Genetics, 2009, v. 18, n. 21, p. 4118, doi. 10.1093/hmg/ddp360
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- Article
ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing.
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- Nature Structural & Molecular Biology, 2009, v. 16, n. 7, p. 763, doi. 10.1038/nsmb.1611
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- Article
Genome-Wide Association of Histone H3 Lysine Nine Methylation with CHG DNA Methylation in Arabidopsis thaliana.
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- PLoS ONE, 2008, v. 3, n. 9, p. 1, doi. 10.1371/journal.pone.0003156
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- Article
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning.
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- Nature, 2008, v. 452, n. 7184, p. 215, doi. 10.1038/nature06745
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- Article
Modeling the regulatory network of histone acetylation in Saccharomyces cerevisiae.
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- Molecular Systems Biology, 2007, v. 3, n. 1, p. 1, doi. 10.1038/msb4100194
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Genetics Education.
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- Genetics, 2007, v. 177, n. 2, p. 689
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Whole-Genome Analysis of Histone H3 Lysine 27 Trimethylation in Arabidopsis.
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- PLoS Biology, 2007, v. 5, n. 5, p. e129, doi. 10.1371/journal.pbio.0050129
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- Article
Utilizing logical relationships in genomic data to decipher cellular processes.
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- FEBS Journal, 2005, v. 272, n. 20, p. 5110, doi. 10.1111/j.1742-4658.2005.04946.x
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- Article
Inferring protein interactions from phylogenetic distance matrices.
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- Bioinformatics, 2003, v. 19, n. 16, p. 2039, doi. 10.1093/bioinformatics/btg278
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- Article