Works by Cokol, Murat

Results: 22

Synergistic activity of vorinostat combined with gefitinib but not with sorafenib in mutant KRAS human non-small cell lung cancers and hepatocarcinoma.

Published in:

OncoTargets & Therapy, 2016, v. 9, p. 6843, doi. 10.2147/OTT.S117743

By:

Jeannot, Victor;
Busser, Benoit;
Vanwonterghem, Laetitia;
Michallet, Sophie;
Ferroudj, Sana;
Cokol, Murat;
Coll, Jean-Luc;
Ozturk, Mehmet;
Hurbin, Amandine

Publication type:

Article

Novel anti-HER2 monoclonal antibodies: synergy and antagonism with tumor necrosis factor-α.

Published in:

2012

By:

Ceran, Ceyhan;
Cokol, Murat;
Cingoz, Sultan;
Tasan, Ipek;
Ozturk, Mehmet;
Yagci, Tamer

Publication type:

journal article

Novel anti-HER2 monoclonal antibodies: synergy and antagonism with tumor necrosis factor-α.

Published in:

BMC Cancer, 2012, v. 12, n. 1, p. 450, doi. 10.1186/1471-2407-12-450

By:

Ceran, Ceyhan;
Cokol, Murat;
Cingoz, Sultan;
Tasan, Ipek;
Ozturk, Mehmet;
Yagci, Tamer

Publication type:

Article

A novel, multitargeted endogenous metabolic modulator composition impacts metabolism, inflammation, and fibrosis in nonalcoholic steatohepatitis-relevant primary human cell models.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-88913-1

By:

Daou, Nadine;
Viader, Andreu;
Cokol, Murat;
Nitzel, Arianna;
Chakravarthy, Manu V.;
Afeyan, Raffi;
Tramontin, Tony;
Marukian, Svetlana;
Hamill, Michael J.

Publication type:

Article

Oxidative Stress Is a Mediator for Increased Lipid Accumulation in a Newly Isolated <i>Dunaliella salina</i> Strain.

Published in:

PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0091957

By:

Yilancioglu, Kaan;
Cokol, Murat;
Pastirmaci, Inanc;
Erman, Batu;
Cetiner, Selim

Publication type:

Article

Chemogenomics and orthology-based design of antibiotic combination therapies.

Published in:

Molecular Systems Biology, 2016, v. 12, n. 5, p. n/a, doi. 10.15252/msb.20156777

By:

Chandrasekaran, Sriram;
Cokol‐Cakmak, Melike;
Sahin, Nil;
Yilancioglu, Kaan;
Kazan, Hilal;
Collins, James J;
Cokol, Murat

Publication type:

Article

Systematic exploration of synergistic drug pairs.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.71

By:

Cokol, Murat;
Chua, Hon Nian;
Tasan, Murat;
Mutlu, Beste;
Weinstein, Zohar B;
Suzuki, Yo;
Nergiz, Mehmet E;
Costanzo, Michael;
Baryshnikova, Anastasia;
Giaever, Guri;
Nislow, Corey;
Myers, Chad L;
Andrews, Brenda J;
Boone, Charles;
Roth, Frederick P

Publication type:

Article

Prediction of ultra-high-order antibiotic combinations based on pairwise interactions.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 01, p. 1, doi. 10.1371/journal.pcbi.1006774

By:

Katzir, Itay;
Cokol, Murat;
Aldridge, Bree B.;
Alon, Uri

Publication type:

Article

Chemogenomic model identifies synergistic drug combinations robust to the pathogen microenvironment.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006677

By:

Cokol, Murat;
Li, Chen;
Chandrasekaran, Sriram

Publication type:

Article

Modeling the impact of drug interactions on therapeutic selectivity.

Published in:

Nature Communications, 2018, v. 9, p. 1, doi. 10.1038/s41467-018-05954-3

By:

Weinstein, Zohar B.;
Kuru, Nurdan;
Kiriakov, Szilvia;
Palmer, Adam C.;
Khalil, Ahmad S.;
Clemons, Paul A.;
Zaman, Muhammad H.;
Roth, Frederick P.;
Cokol, Murat

Publication type:

Article

Emergent behavior of growing knowledge about molecular interactions.

Published in:

Nature Biotechnology, 2005, v. 23, n. 10, p. 1243, doi. 10.1038/nbt1005-1243

By:

Cokol, Murat;
Iossifov, Ivan;
Weinreb, Chani;
Rzhetsky, Andrey

Publication type:

Article

Retraction rates are on the rise.

Published in:

EMBO Reports, 2008, v. 9, n. 1, p. 2, doi. 10.1038/sj.embor.7401143

By:

Cokol, Murat;
Ozbay, Fatih;
Rodriguez-Esteban, Raul

Publication type:

Article

Response by Cokol et al.

Published in:

EMBO Reports, 2007, v. 8, n. 9, p. 793, doi. 10.1038/sj.embor.7401054

By:

Cokol, Murat;
Iossifov, Ivan;
Rodriguez-Esteban, Raul;
Rzhetsky, Andrey

Publication type:

Article

How many scientific papers should be retracted?

Published in:

EMBO Reports, 2007, v. 8, n. 5, p. 422, doi. 10.1038/sj.embor.7400970

By:

Cokol, Murat;
Iossifov, Ivan;
Rodriguez-Esteban, Raul;
Rzhetsky, Andrey

Publication type:

Article

Author Correction: Antibiotic susceptibility signatures identify potential antimicrobial targets in the Acinetobacter baumannii cell envelope.

Published in:

2020

By:

Geisinger, Edward;
Mortman, Nadav J.;
Dai, Yunfei;
Cokol, Murat;
Syal, Sapna;
Farinha, Andrew;
Fisher, Delaney G.;
Tang, Amy Y.;
Lazinski, David W.;
Wood, Stephen;
Anthony, Jon;
van Opijnen, Tim;
Isberg, Ralph R.

Publication type:

Correction Notice

Antibiotic susceptibility signatures identify potential antimicrobial targets in the Acinetobacter baumannii cell envelope.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18301-2

By:

Geisinger, Edward;
Mortman, Nadav J.;
Dai, Yunfei;
Cokol, Murat;
Syal, Sapna;
Farinha, Andrew;
Fisher, Delaney G.;
Tang, Amy Y.;
Lazinski, David W.;
Wood, Stephen;
Anthony, Jon;
van Opijnen, Tim;
Isberg, Ralph R.

Publication type:

Article

Characterizing ABC-Transporter Substrate-Likeness Using a Clean-Slate Genetic Background.

Published in:

Frontiers in Pharmacology, 2019, p. N.PAG, doi. 10.3389/fphar.2019.00448

By:

Sokolov, Artem;
Ashenden, Stephanie;
Sahin, Nil;
Lewis, Richard;
Erdem, Nurdan;
Ozaltan, Elif;
Bender, Andreas;
Roth, Frederick P.;
Cokol, Murat

Publication type:

Article

Finding nuclear localization signals.

Published in:

2000

By:

Cokol, Murat;
Nair, Rajesh;
Rost, Burkhard

Publication type:

Report

Design of high-order antibiotic combinations against M. tuberculosis by ranking and exclusion.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-48410-y

By:

Yilancioglu, Kaan;
Cokol, Murat

Publication type:

Article

Strength of Selection Pressure Is an Important Parameter Contributing to the Complexity of Antibiotic Resistance Evolution.

Published in:

Molecular Biology & Evolution, 2014, v. 31, n. 9, p. 2387, doi. 10.1093/molbev/msu191

By:

Oz, Tugce;
Guvenek, Aysegul;
Yildiz, Sadik;
Karaboga, Enes;
Tamer, Yusuf Talha;
Mumcuyan, Nirva;
Ozan, Vedat Burak;
Senturk, Gizem Hazal;
Cokol, Murat;
Yeh, Pamela;
Toprak, Erdal

Publication type:

Article

A drug similarity network for understanding drug mechanism of action.

Published in:

Journal of Bioinformatics & Computational Biology, 2014, v. 12, n. 2, p. -1, doi. 10.1142/S0219720014410078

By:

Karabulut, Nermin Pinar;
Akhmedov, Murodzhon;
Cokol, Murat

Publication type:

Article

Guided screen for synergistic three-drug combinations.

Published in:

PLoS ONE, 2020, v. 15, n. 7, p. 1, doi. 10.1371/journal.pone.0235929

By:

Cokol-Cakmak, Melike;
Cetiner, Selim;
Erdem, Nurdan;
Bakan, Feray;
Cokol, Murat

Publication type:

Article